Cp4.1LG08g06580 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionKnotted 1-binding protein
LocationCp4.1LG08 : 126266 .. 128504 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGTATAAAAGGGCTCCATTCTCTCGTATTCTGGCGCGCTAAATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGGTAAGAGTCTATCGAACTCTATTTTTTCCATCTTTAGAATGCTCCATATCATTATTCATTTGATCTTGCTGTTCTTCATTCATTATGCAATTACTTCAAGTTGTCCTAAAATTCGATCATCTCAGTTTAGTAAACTGACGCTTGAATCAACTTCACTGAAAAATATGGCTGATGATGAACAGTTTAGTATCGATTCCTTGTGAAACCTAGAGTTTTAGCCTTCTTTTTTTTCCTTTTCAAATATTGGTATTGGAAATCAGAATGATTCCTTGTTTAACGTGTCGTGGTGTACATTTTTGAAGTTCATTTGAATAGGCAAGACGAAAAAGTCGAATAATCGTATACTTGTGCCAATTTTGTAGTCAACACTTTTTTTTTTTTTTTTTTGGNTCCTAGCTGCTATGCTATCAAGAAGAATTTCAAGGTCTGGATGTGTGTAGCATGACGTTAGGGGACGAACACTGGAACTTTTGTTCTAACTTGAGCCTTTTTGTACATCTATTTCAGAGTGTTAATTATTAGACGCTTGCTACTGCCCGTCCGGGTCCAAAATCTGTTAATCTTATCTCCAAATTCTGTTTACTACGCGTTCAATCTATCTACCTCTTGTCGTATGAGTATCCCTCTCTGTGAAGCACATGGCAACGACAAATCCTTACAACGAAGTTTTTTAGGTTCTTCTCAATATACGAATATTTTTGTATAAATAACTTCTCACCTTGCTACAGTTGATTGATAAACAATTGCATATTTGGAATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTGTATGTTTACTCTTTTTTCTATGTCGTTATTTATCATGCCATTGCCAATGGTAATGAGAAATTACATTTCCTCAGATGGAAGAGCAGGGAAAGGATACAAGCATATCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATTGAAAGCTTCACACAACTGGTAGGTGGTGGCTATGACCAATCCTTTTGAGCTGGAAATATGAGCTCGGTGTTAGGAGTGCGACCAAAATCCCACATTGACTAGATATAAGAAATATCACAAGTATATAAGTGAGAGACATTATCTTTATTGATATGAGATTTTTTTTTTTTGGGTGAAATCAAAAGTAGAGTCACATGGGCTAATGTCCTAAAGTATACAATATTATATGAATATGGAAATATGTGTGGAAATATGTGAAGGGAAGTAGCTAGAACTTGGGTTATATTGCAATAGTATGTATCGTTTTCAAGTTTTTGTTTGGCTGCAAATATTTTCTACTGATCCACATTAAATTTTTCGTAATGAAGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCGTGAGTTGAAACTAGAATATATACCTTCAAACATTTTTGTTGAGAACTACTTTATTAACTTAATTACTGTTCTTTCTTTCACTCTTTCCAGCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTGTTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTCTGAAGGTAATTTCAAACAGGGCTATTTTTTTTTTCCAGCTTTGGAAAATTGATTCGAACCATGATTGAAAAGCTAGGCTAGAAGAGGTGTCTACATCAAGGAAGCAACTTAGTTCCATGAAACCTAGTAGAAAAGTTCTATATTTAGTTTTAACGAATAACCATGCATGCTCATTTTTATCTTTAAACTTCGATCAAAATCATGCATAAATCAAAACTGTGAAACAATTGAGATACTAACTGAGTTGTGTATTTGCTTGGTTTTGTGTTTTAGGCGAAGATGGAAAATCATGTAGTTAAAAATTGTAACCCTGACAAACTGTTCTAAAGAATATTATATCCTTAGTACTGAGGTGGGAGGTGGGGATCCAAATTTAAGATGTCTCTCTTTTTTTTTTTTGGTTGTTGTTAATAGAGAATGTCATGATCCAAGAGTAAGGATAGAGGTTGAATAGAGATTTGAAAATTTAACTTTCGGGATACAT

mRNA sequence

CGAGTATAAAAGGGCTCCATTCTCTCGTATTCTGGCGCGCTAAATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGTTGATTGATAAACAATTGCATATTTGGAATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTGTTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTCTGAAGGCGAAGATGGAAAATCATGTAGTTAAAAATTGTAACCCTGACAAACTGTTCTAAAGAATATTATATCCTTAGTACTGAGGTGGGAGGTGGGGATCCAAATTTAAGATGTCTCTCTTTTTTTTTTTTGGTTGTTGTTAATAGAGAATGTCATGATCCAAGAGTAAGGATAGAGGTTGAATAGAGATTTGAAAATTTAACTTTCGGGATACAT

Coding sequence (CDS)

ATGGAAAGCAATGGTACCGAATTCACTGGCAAACGCATGAAACTAGCTGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTTAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTGTTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTCTGA

Protein sequence

MESNGTEFTGKRMKLAVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARNLLQNGHIQF
Homology
[Close]
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match: A0A0A0LI92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844890 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VSELLESGKTAFKDLSNEFEE+IIAIHK++VE+WQ EIKELRL+DSSNEEAST+LCNARN
Sbjct: 63  VSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNARN 122

Query: 77  LLQNGHIQF 86
           LLQNG IQF
Sbjct: 123 LLQNGQIQF 131

[Close]
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match: B9I988_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10590g PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-18
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VSELLESGK  FK+LSNEFEE++I+IHK  +E+WQ EIKELRLLD+SNEEAS +L NAR 
Sbjct: 62  VSELLESGKAMFKELSNEFEERLISIHKEQMEKWQEEIKELRLLDASNEEASGILHNARY 121

Query: 77  LLQNGHI 84
           +LQN HI
Sbjct: 122 VLQNPHI 128

[Close]
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match: W9QYI2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013903 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-17
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 17 VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
          VSELLESGK  FK+LSNEFEE++I IHK  VE+WQ EIK+LRLLD+SNEEA  +L NAR 
Sbjct: 19 VSELLESGKAIFKELSNEFEERMIMIHKEQVEKWQEEIKQLRLLDASNEEAHALLHNARC 78

Query: 77 LLQNGHI 84
          LLQN HI
Sbjct: 79 LLQNAHI 85

[Close]
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match: A0A067H741_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039993mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           +SELLESGKT FK+LSNEFEE++I IHK  +++WQ EIKELRL D+SNEEAS +L NAR 
Sbjct: 50  ISELLESGKTMFKELSNEFEERLITIHKEQIDKWQEEIKELRLHDASNEEASAILHNARF 109

Query: 77  LLQN 81
           LLQN
Sbjct: 110 LLQN 113

[Close]
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match: V4TWH5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023548mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           +SELLESGKT FK+LSNEFEE++I IHK  +++WQ EIKELRL D+SNEEAS +L NAR 
Sbjct: 50  ISELLESGKTMFKELSNEFEERLITIHKEQIDKWQEEIKELRLHDASNEEASAILHNARF 109

Query: 77  LLQN 81
           LLQN
Sbjct: 110 LLQN 113

[Close]
BLAST of Cp4.1LG08g06580 vs. TAIR10
Match: AT5G03050.1 (AT5G03050.1 unknown protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VS LLE+GKT  K+LSNEFEE++I IHK +VE+WQ EIKELRLLD+SNEE +++L NAR 
Sbjct: 72  VSNLLETGKTMLKELSNEFEERLIMIHKEHVEKWQDEIKELRLLDASNEETTSLLHNARY 131

Query: 77  LLQNGHIQ 85
           L+QN  I+
Sbjct: 132 LIQNPSIE 139

[Close]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match: gi|659130768|ref|XP_008465341.1| (PREDICTED: myosin-15 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VSELLESGKTAFK+L NEFEE+IIAIHK++VE+WQHEIKELRL+DSSNEE ST+LCNARN
Sbjct: 63  VSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNEEVSTILCNARN 122

Query: 77  LLQNGHIQF 86
           LLQNGHIQF
Sbjct: 123 LLQNGHIQF 131

[Close]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match: gi|449446778|ref|XP_004141148.1| (PREDICTED: uncharacterized protein LOC101207413 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.8e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VSELLESGKTAFKDLSNEFEE+IIAIHK++VE+WQ EIKELRL+DSSNEEAST+LCNARN
Sbjct: 63  VSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNARN 122

Query: 77  LLQNGHIQF 86
           LLQNG IQF
Sbjct: 123 LLQNGQIQF 131

[Close]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match: gi|224130774|ref|XP_002320923.1| (hypothetical protein POPTR_0014s10590g [Populus trichocarpa])

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-18
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           VSELLESGK  FK+LSNEFEE++I+IHK  +E+WQ EIKELRLLD+SNEEAS +L NAR 
Sbjct: 62  VSELLESGKAMFKELSNEFEERLISIHKEQMEKWQEEIKELRLLDASNEEASGILHNARY 121

Query: 77  LLQNGHI 84
           +LQN HI
Sbjct: 122 VLQNPHI 128

[Close]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match: gi|985466983|ref|XP_015389679.1| (PREDICTED: uncharacterized protein LOC102616745 isoform X1 [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1 

Query: 17  VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
           +SELLESGKT FK+LSNEFEE++I IHK  +++WQ EIKELRLLD+SNEEAS +L NAR 
Sbjct: 63  ISELLESGKTMFKELSNEFEERLITIHKEQIDKWQEEIKELRLLDASNEEASAILHNARF 122

Query: 77  LLQN 81
           LLQN
Sbjct: 123 LLQN 126

[Close]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match: gi|703080533|ref|XP_010091447.1| (hypothetical protein L484_013903 [Morus notabilis])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 17 VSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTVLCNARN 76
          VSELLESGK  FK+LSNEFEE++I IHK  VE+WQ EIK+LRLLD+SNEEA  +L NAR 
Sbjct: 19 VSELLESGKAIFKELSNEFEERMIMIHKEQVEKWQEEIKQLRLLDASNEEAHALLHNARC 78

Query: 77 LLQNGHI 84
          LLQN HI
Sbjct: 79 LLQNAHI 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g06580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI92_CUCSA1.9e-2588.41Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844890 PE=4 SV=1[more]
B9I988_POPTR6.6e-1873.13Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10590g PE=4 SV=1[more]
W9QYI2_9ROSA1.9e-1773.13Uncharacterized protein OS=Morus notabilis GN=L484_013903 PE=4 SV=1[more]
A0A067H741_CITSI1.3e-1671.88Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039993mg PE=4 SV=1[more]
V4TWH5_9ROSI1.3e-1671.88Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023548mg PE=4 SV=1[more]
BLAST of Cp4.1LG08g06580 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G03050.17.0e-1966.18 unknown protein[more]
BLAST of Cp4.1LG08g06580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130768|ref|XP_008465341.1|1.2e-2586.96PREDICTED: myosin-15 [Cucumis melo][more]
gi|449446778|ref|XP_004141148.1|2.8e-2588.41PREDICTED: uncharacterized protein LOC101207413 [Cucumis sativus][more]
gi|224130774|ref|XP_002320923.1|9.5e-1873.13hypothetical protein POPTR_0014s10590g [Populus trichocarpa][more]
gi|985466983|ref|XP_015389679.1|2.8e-1773.44PREDICTED: uncharacterized protein LOC102616745 isoform X1 [Citrus sinensis][more]
gi|703080533|ref|XP_010091447.1|2.8e-1773.13hypothetical protein L484_013903 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06580.1Cp4.1LG08g06580.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 40..60
scor
NoneNo IPR availablePANTHERPTHR35500FAMILY NOT NAMEDcoord: 17..83
score: 5.3