CmoCh06G017290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Knotted 1-binding protein
Location	Cmo_Chr06 : 11860508 .. 11864444 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGGTAAGAGACTATCGAACTCTATTTTTTCCATCTTTAGAATGCTCCATATCATTATTCATTTGATCTTGCTGTTCTTCATTCATTATGCAATTTCTTCAAGTTGTCCTAAAATTCGATAATCGCAGTTTAGTAAACTGACGCTTGAATCAACTTCACTGAAAAATATGGCTGATGATAAACAGTTTAGTATCGATTCCTTGGGAAACCTAGAGTTTTAGCCTTTTTTTTTTTTTTTCCTTTTCAAATATTGGTATTGGTAGTCAGAATGATTCCTTGTTTAACGTGTCGTGGTGTACATTTTTGAAGTTCATTTGAATAGGCAAGACGAAAAAACCGAATAATCGTATACTTGTGCCAATTTTGTAGTCAACACTGTTTTTTTTTTTAAATTTATTTATTTTTTGCGACTGTTGAATGTCTTGCGCCTCCTAGCTGCTATGCTATCAAGAAGAATTTCAAGGTCTGGATGTGTGCAGCATGACGTTAGGGGACGAACACTGGAACTTTTGTTCTAATTTGAGCCTTTTTGTGCATCTATTTCAGAGTGTTAACTATTAGACGCTTACTACTGCCCGTCCGGGTCCAAAATCTGTTAATCTTATCTCCAAATTCTGTTTGCTACGCGTTCAATCAGTCTACCTCTTGTCGTATGAGTATCCCTCTCTGTGAAGCACATGGCAACGACAAATCCTTACAATGAAGTCTTTTAGGTTCTTCTCATTATACGAATATTTTTGTATAAATAACTTCTCACCTTGCTACAGTTGATTGATAAACAATTGCATACTTGGAATGGAAAGCAATGGTATCGACTTCACTGGCAAACGCATGAAACTAGCTGTATGTTTACTCTTTTTTCTATGTCGTTATTTATCATGCCATTGCCAATGGAAATGAGAAATTACATTTCCTCAGATGGAAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAACTGGTAGGTGGTGGCTATGACCAATCCTATTGAGCTGGAAATATGAGCTCAGTGTTAGGAGTGCGACCAAAATCCCACATTGACTAGATATAAAAAAGATCATGAGTATATAAATGAGAGACATTATATCAGATTTTTTTTTGGGTGAAATCAAAAGTAGAGTCACATGGGCTAATGTCCTAAAGTATAGGATATTATATGAACATGGAAATATGTGAAGGGAAGTAGCTAGAACTTGGGTTATATTGCAATAGTATGTATTGTTTTCAAGTTTTTGTTTGGCTGCAAATATTTTCTACTGATCCACATTAATTTTTTCTTAATGAAGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTCAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCGTGAGTTGAAACTAGAATATATACCTTCAAACATTTTTGTTGAGAACTACTTTATTAACTTAATTACTGTTCTTTCTTTCATTCTTTCCAGCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGGTCACATCCAGTTTTGAAGGTAATTTCAAACAGGGCTATTTTTTTTTTCCAGCTTTGGAAAATTGATTCGAACCATGATTGAAAAGCTAGGCTAGAAGAGGTGTCTACATCAAGGAAGCAACTTAGTTCCATGAAACCTAGTAGAAAAGTTCTATATTTAGTTTTAACGAATAACCAATGCATGCTCATTTTTATCTTTAAACTTCGATCAAAATCATGCATATATCAAAACTGTGAAACAATTGAGATACTGAGTTGTGTATTTGATTGGTTTTGTGTTTTAGGCGAAGATGGAAAATCATGTAGTTAAAAATTGTAACCCTGACAAACTGTTCTAAAGAATATTACATCCTTAGTACTGAGGTGGGAGGTGGGGATCCAAATTTAAGATGTCTCTCTTTTTTTTTTTTTTGGTTGTTGTTAATAGAGAATGTCATGATCCAAGAGTAAGGATAGAGGTTGAATAGAGATTTGAAAATTTAACTTTCGGGATACATGTATAATATAAAATTGACAATCGAAGTGAGTTTGTGATACATAATCTTGATATTTTAACCCTAAATCTAAATACCTTGTATAAGAGATTGTATGCATGGAACATACTTGATATTTACAAATCAAGCAAACAAGAATCCTAATATTTTTATATGTTATTTATAGTATATGTATTTTTTACTCCTAAATAAATTATTATACCTATTATATACCCTAATTGTAGTATATATGCTGTAAAATGTCTGGAGTCAACCTAATATATATAGAACTATTACATATAGTCGGGAGAAAAGTGAGTAGAACTTTATTGATATGTATCATTGACTAAGATATTACAATTATGAATCACCGATTTTCAAATGTTAAAACTAAAAAATATCGATTTTTTTACTACTTTTTATGAATTTTTAAAGATAAAAATAATTAAAATAAAGTTATTTTGATTTTGATTTTATTTGTTAAGCTTAGTACTTGTTGAAAGAGATCAAGTTACCACTTTTGTATGATATTTGATATAAAAGTTATGGAGGTAACATGCAATTAAAATAGTAAAATTGTCAATTTTGAAATTTAATTGATACCACCACCAAAATTCAAGAATATAAAATATGTTAAGAAATGTTAAAAAAAATACATTAAGGTAGTGATTCAACTTTAGTATATAACAATTTGGTAGCATTTTAGTCTATGAAGTGAAAACCTTCCATCATTTCCTTAGTACAATGAAATTACGATCATTGTAGCTCAATTTCACATCCAAATTTGTTGATAAGATGTATATGTAAATTTTTAATTTTATCAAATTACCCTTTAAGCTTGAACAAATGTTTCATTTTTTTTACCTTCGATTTAGTTTTGATTGAAGAATTATTACAAAAAATTCTCGTGTATGGTAAAATCAAATATTAGAGAATAATTTTGGATGTGAAAAATGATTTTGAGCAATCAAAATTACTTTTATACTTTCAAACACAGATTTAATAGTACCTTAATTGTCATCTTGAACTCTAAAAACTAAATCGAAGTAATACGCAAACTTCAAGGAGAAAAAGGTAATTTAGCCCAGCTTTAATAAGCAATTTTAACCCAAAATAATTTTAATAAGGAACAAAAAAAGAAAAAATCACTATTTTCCGTTTCAACAAAAAAGAAAAAAGCAAAAAGAAAATAGAAAAAATGAAGCCTCTTTCGCGGTTGCTGCCCGCCCTCCCCTGAATCCCAAGCAATCTCGCTCACTCTCAGCTCGCTGTACGATTCCCATCGACATCAGTCTCCATCCCTCGTCTCTGAATGCAGAATCGTCACTGGTCGACTCGAGAATCGCTCCTCTCTATTCCGACTTATCGTTCTCCTTCGTCCCTCCCCTGTAAGTCTCTCACTCATTCGGCTGCTTCAAGGTTCGTTTGTGACTATTGCGTATTTTTGTGAAGACTTGGTGTAGTTACGATTGCTGCAATCACGATTGAATGATTGTTTTTTTTTTTTTGTTTTGTTTTTATCACCTCAGATAGCCATTAGCAACAAATATCTACTTTATTCTAGCCCGAGCTACCGTAACTAGGAAGTGAGACAGCAATTTTTTTTGAGTATATGCTTTCAGTGATAGAGATTACATTTTTCTAATTTGGTTTTCTTTTGGTGGCAGGCTGAGGCTTCTTGGTGAACTTTTAGCAGAGGAAAGCGGTGCGACACCATTTTCATATAATAGATTTAAACAGACTGTATCTTTGTAA

mRNA sequence

ATCATTAAACCGACGGAGGTGGAGAAGGCAATCAGCGGAGAAAATTGTTGATTGATAAACAATTGCATACTTGGAATGGAAAGCAATGGTATCGACTTCACTGGCAAACGCATGAAACTAGCTATGGAAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAACTGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTCAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGCTCGCTGTACGATTCCCATCGACATCAGTCTCCATCCCTCGTCTCTGAATGCAGAATCGTCACTGGTCGACTCGAGAATCGCTCCTCTCTATTCCGACTTATCGTTCTCCTTCGTCCCTCCCCTGCTGAGGCTTCTTGGTGAACTTTTAGCAGAGGAAAGCGGTGCGACACCATTTTCATATAATAGATTTAAACAGACTGTATCTTTGTAA

Coding sequence (CDS)

ATGGAAAGCAATGGTATCGACTTCACTGGCAAACGCATGAAACTAGCTATGGAAGAGCAGGGAAAGGATACAAGCATGTCCAACATTTCAGAAAATGAGCAGTGTGAGACGGACATTAGGGGATCCGAGGAGATGGAATCCAATATAGCTCGCCTACTAGAAAAGATCGAAAGCTTCACACAACTGGTGTCTGAACTCCTGGAGTCGGGAAAGACTGCTTTCAAAGATCTTAGTAATGAATTTGAAGAGCAAATCATAGCCATTCACAAGAATAATGTTGAAAGATGGCAACACGAGATCAAAGAGCTGCGGTTGCTTGATTCATCAAATGAGGAAGCCAGTACTATTTTATGCAATGCTCGAAATTTACTTCAGAATGCTCGCTGTACGATTCCCATCGACATCAGTCTCCATCCCTCGTCTCTGAATGCAGAATCGTCACTGGTCGACTCGAGAATCGCTCCTCTCTATTCCGACTTATCGTTCTCCTTCGTCCCTCCCCTGCTGAGGCTTCTTGGTGAACTTTTAGCAGAGGAAAGCGGTGCGACACCATTTTCATATAATAGATTTAAACAGACTGTATCTTTGTAA

Homology

[Close]

BLAST of CmoCh06G017290 vs. TrEMBL
Match: A0A0A0LI92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844890 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.5e-49
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60
           MESNG +F GKR KLA+EEQ  DT MSN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGTEFNGKRPKLAVEEQVSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120
           QLVSELLESGKTAFKDLSNEFEE+IIAIHK++VE+WQ EIKELRL+DSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNA 120

Query: 121 RNLLQNAR 129
           RNLLQN +
Sbjct: 121 RNLLQNGQ 128

[Close]

BLAST of CmoCh06G017290 vs. TrEMBL
Match: A5ATJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040168 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-31
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNIS--ENEQCETDIRGSEEMESNIARLLEKIES 60
           MES G +   KRMK AM+E   +     +   E E+ ET+I GSEEME +I R+LEKIE+
Sbjct: 1   MESQGAEVARKRMKPAMDENEGEVGDGIVDQIEEEETETNIAGSEEMELSINRILEKIEN 60

Query: 61  FTQLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILC 120
           FTQLVSELLESGKT FKDLSNEFEE++I IHK  +E+WQ EI+ELRLLD++NEE + +L 
Sbjct: 61  FTQLVSELLESGKTLFKDLSNEFEERMILIHKEQIEKWQEEIRELRLLDAANEEINAVLH 120

Query: 121 NARNLLQNARCTIP 133
           NAR LLQN    +P
Sbjct: 121 NARCLLQNIEHMLP 134

[Close]

BLAST of CmoCh06G017290 vs. TrEMBL
Match: A0A0D2PU67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G133300 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-29
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKD-----TSMSNISENEQCETDIRGSEEMESNIARLLEK 60
           MES   + + KRMK  + E+ +D     T M  I+E EQ E  I GSEEME NI+ +LEK
Sbjct: 1   MESATNEASRKRMKPDVGEKQEDHISNGTVMEEITEKEQSEAIIVGSEEMELNISHILEK 60

Query: 61  IESFTQLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEAST 120
           IE FTQLVSELLESGK+ FK+LSN+FEE++I IHK  +E+WQ EIKELRL+D+SNEEA+ 
Sbjct: 61  IERFTQLVSELLESGKSMFKELSNDFEERLIMIHKEQMEKWQEEIKELRLIDASNEEATA 120

Query: 121 ILCNARNLLQNA 128
           +L NAR LLQN+
Sbjct: 121 LLSNARFLLQNS 132

[Close]

BLAST of CmoCh06G017290 vs. TrEMBL
Match: B9I988_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10590g PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.1e-29
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1


Query: 11  KRMKLAMEEQGK---DTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSELL 70
           KRMK  ++E G+   D +   I E E+ ET+I GSEEME NIA + EKIE FTQ+VSELL
Sbjct: 7   KRMKHGIDENGQEVIDGAALVIVEKEETETNIVGSEEMELNIAHIFEKIEHFTQMVSELL 66

Query: 71  ESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQN 127
           ESGK  FK+LSNEFEE++I+IHK  +E+WQ EIKELRLLD+SNEEAS IL NAR +LQN
Sbjct: 67  ESGKAMFKELSNEFEERLISIHKEQMEKWQEEIKELRLLDASNEEASGILHNARYVLQN 125

[Close]

BLAST of CmoCh06G017290 vs. TrEMBL
Match: R0FIA1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002221mg PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 73/120 (60.83%), Postives = 95/120 (79.17%), Query Frame = 1


Query: 11  KRMKLAMEEQGKDT----SMSNISENEQCETDIRGSEEMESNIARLLEKIESFTQLVSEL 70
           KRMKL+ EE   D+    S+ N  ENE+ ET +  S+E+E NIA++L+KIESFTQ VS L
Sbjct: 16  KRMKLSDEEGKGDSRDGISLENTVENEEAETKLVASDEIEQNIAQILDKIESFTQTVSNL 75

Query: 71  LESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQN 127
           LE+GKT FK+LSNEFEE++I IH+ +VE+WQ EIKELRLLD+SNEE +++L NAR L+QN
Sbjct: 76  LETGKTMFKELSNEFEERLIMIHREHVEKWQEEIKELRLLDASNEETTSLLHNARYLIQN 135

[Close]

BLAST of CmoCh06G017290 vs. TAIR10
Match: AT5G03050.1 (AT5G03050.1 unknown protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 11  KRMKLAMEEQGKDTSMSNIS-----ENEQCETDIRGSEEMESNIARLLEKIESFTQLVSE 70
           KRM+ A +E+GK  S   IS     ENE+ ET +  S+EME +IA++L+KIESFTQ VS 
Sbjct: 16  KRMR-ASDEEGKGDSRDGISLDHTIENEEAETKLVASDEMELSIAQILDKIESFTQTVSN 75

Query: 71  LLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNARNLLQ 127
           LLE+GKT  K+LSNEFEE++I IHK +VE+WQ EIKELRLLD+SNEE +++L NAR L+Q
Sbjct: 76  LLETGKTMLKELSNEFEERLIMIHKEHVEKWQDEIKELRLLDASNEETTSLLHNARYLIQ 135

[Close]

BLAST of CmoCh06G017290 vs. NCBI nr
Match: gi|659130768|ref|XP_008465341.1| (PREDICTED: myosin-15 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 3.4e-50
Identity = 107/126 (84.92%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60
           MESNG +FTGKR KLA+EEQG+DT MSN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGTEFTGKRQKLAVEEQGRDTDMSNVLENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120
           QLVSELLESGKTAFK+L NEFEE+IIAIHK++VE+WQHEIKELRL+DSSNEE STILCNA
Sbjct: 61  QLVSELLESGKTAFKELINEFEERIIAIHKDHVEKWQHEIKELRLIDSSNEEVSTILCNA 120

Query: 121 RNLLQN 127
           RNLLQN
Sbjct: 121 RNLLQN 126

[Close]

BLAST of CmoCh06G017290 vs. NCBI nr
Match: gi|449446778|ref|XP_004141148.1| (PREDICTED: uncharacterized protein LOC101207413 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60
           MESNG +F GKR KLA+EEQ  DT MSN+ ENEQCET I+GSEEMESNIA LLEKIESFT
Sbjct: 1   MESNGTEFNGKRPKLAVEEQVSDTDMSNLVENEQCETIIKGSEEMESNIACLLEKIESFT 60

Query: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120
           QLVSELLESGKTAFKDLSNEFEE+IIAIHK++VE+WQ EIKELRL+DSSNEEASTILCNA
Sbjct: 61  QLVSELLESGKTAFKDLSNEFEERIIAIHKDHVEKWQDEIKELRLIDSSNEEASTILCNA 120

Query: 121 RNLLQNAR 129
           RNLLQN +
Sbjct: 121 RNLLQNGQ 128

[Close]

BLAST of CmoCh06G017290 vs. NCBI nr
Match: gi|147818955|emb|CAN67127.1| (hypothetical protein VITISV_040168 [Vitis vinifera])

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-31
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNIS--ENEQCETDIRGSEEMESNIARLLEKIES 60
           MES G +   KRMK AM+E   +     +   E E+ ET+I GSEEME +I R+LEKIE+
Sbjct: 1   MESQGAEVARKRMKPAMDENEGEVGDGIVDQIEEEETETNIAGSEEMELSINRILEKIEN 60

Query: 61  FTQLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILC 120
           FTQLVSELLESGKT FKDLSNEFEE++I IHK  +E+WQ EI+ELRLLD++NEE + +L 
Sbjct: 61  FTQLVSELLESGKTLFKDLSNEFEERMILIHKEQIEKWQEEIRELRLLDAANEEINAVLH 120

Query: 121 NARNLLQNARCTIP 133
           NAR LLQN    +P
Sbjct: 121 NARCLLQNIEHMLP 134

[Close]

BLAST of CmoCh06G017290 vs. NCBI nr
Match: gi|731395960|ref|XP_010652343.1| (PREDICTED: uncharacterized protein LOC104879810 [Vitis vinifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNIS--ENEQCETDIRGSEEMESNIARLLEKIES 60
           MES G +   KRMK AM+E   +     +   E E+ ET+I GSEEME +I R+LEKIE+
Sbjct: 1   MESQGAEVARKRMKPAMDENEGEVGDGIVDQIEEEETETNIAGSEEMELSINRILEKIEN 60

Query: 61  FTQLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILC 120
           FTQLVSELLESGKT FKDLSNEFEE++I IHK  +E+WQ EI+ELRLLD++NEE + +L 
Sbjct: 61  FTQLVSELLESGKTLFKDLSNEFEERMILIHKEQIEKWQEEIRELRLLDAANEEINAVLH 120

Query: 121 NARNLLQN 127
           NAR LLQN
Sbjct: 121 NARCLLQN 128

[Close]

BLAST of CmoCh06G017290 vs. NCBI nr
Match: gi|1000974882|ref|XP_002515145.2| (PREDICTED: uncharacterized protein LOC8270817 [Ricinus communis])

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 76/126 (60.32%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 1   MESNGIDFTGKRMKLAMEEQGKDTSMSNISENEQCETDIRGSEEMESNIARLLEKIESFT 60
           MES     + KRMKL  EE   D +   I E E+ ET+  GSEE+E NIA + EKIE FT
Sbjct: 1   MESEADKISRKRMKLGEEEVINDATGLEIVEKEETETNAMGSEEVELNIAHIFEKIERFT 60

Query: 61  QLVSELLESGKTAFKDLSNEFEEQIIAIHKNNVERWQHEIKELRLLDSSNEEASTILCNA 120
           Q+VSELLESGKT FK+LSNEFEE++I +HK  +++WQ EIKELR+LD+SNEEA  IL NA
Sbjct: 61  QMVSELLESGKTMFKELSNEFEERLIMMHKEQMDKWQEEIKELRMLDASNEEAGAILHNA 120

Query: 121 RNLLQN 127
           R +LQN
Sbjct: 121 RYVLQN 126

The following BLAST results are available for this feature:

BLAST of CmoCh06G017290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI92_CUCSA	7.5e-49	83.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G844890 PE=4 SV=1	[more]
A5ATJ5_VITVI	3.2e-31	59.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040168 PE=4 SV=1	[more]
A0A0D2PU67_GOSRA	3.0e-29	59.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G133300 PE=4 SV=1	[more]
B9I988_POPTR	5.1e-29	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10590g PE=4 SV=1	[more]
R0FIA1_9BRAS	1.9e-28	60.83	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002221mg PE=4 SV=1	[more]

BLAST of CmoCh06G017290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03050.1	3.1e-30	60.33	unknown protein	[more]

BLAST of CmoCh06G017290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130768\|ref\|XP_008465341.1\|	3.4e-50	84.92	PREDICTED: myosin-15 [Cucumis melo]	[more]
gi\|449446778\|ref\|XP_004141148.1\|	1.1e-48	83.59	PREDICTED: uncharacterized protein LOC101207413 [Cucumis sativus]	[more]
gi\|147818955\|emb\|CAN67127.1\|	4.6e-31	59.70	hypothetical protein VITISV_040168 [Vitis vinifera]	[more]
gi\|731395960\|ref\|XP_010652343.1\|	1.3e-30	61.72	PREDICTED: uncharacterized protein LOC104879810 [Vitis vinifera]	[more]
gi\|1000974882\|ref\|XP_002515145.2\|	1.5e-29	60.32	PREDICTED: uncharacterized protein LOC8270817 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017290.1	CmoCh06G017290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 42..69 score: -coord: 86..106 scor
None	No IPR available	PANTHER	PTHR35500	FAMILY NOT NAMED	coord: 1..132 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017290	Cucsa.340640	Cucumber (Gy14) v1	cgycmoB0941
CmoCh06G017290	CmaCh06G017410	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017290	Cla017185	Watermelon (97103) v1	cmowmB785
CmoCh06G017290	Csa3G844890	Cucumber (Chinese Long) v2	cmocuB810
CmoCh06G017290	MELO3C026900	Melon (DHL92) v3.5.1	cmomeB748
CmoCh06G017290	ClCG10G013240	Watermelon (Charleston Gray)	cmowcgB732
CmoCh06G017290	CSPI03G40900	Wild cucumber (PI 183967)	cmocpiB818
CmoCh06G017290	Lsi03G012850	Bottle gourd (USVL1VR-Ls)	cmolsiB748
CmoCh06G017290	Cp4.1LG08g06580	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G017290	MELO3C026900.2	Melon (DHL92) v3.6.1	cmomedB850
CmoCh06G017290	CsaV3_3G043390	Cucumber (Chinese Long) v3	cmocucB0956
CmoCh06G017290	Cla97C10G196050	Watermelon (97103) v2	cmowmbB821
CmoCh06G017290	Bhi11G001282	Wax gourd	cmowgoB0989
CmoCh06G017290	CsGy3G038360	Cucumber (Gy14) v2	cgybcmoB404
CmoCh06G017290	Carg23331	Silver-seed gourd	carcmoB0383

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017290	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017290	Cucurbita maxima (Rimu)	cmacmoB270
CmoCh06G017290	Cucurbita maxima (Rimu)	cmacmoB273