Cp4.1LG08g06570 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g06570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cp4.1LG08 : 63345 .. 64191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCCTCCTCTCCACCCCCATTCATCGTCTTCCTCTTACTCAAAAACCTAATCACACATACCATCGCCACCGACTCTTTAATAATCCCCCTCATGTTCGCACCACGACTGCTGAGAAGAATGCTCATTTATGCGTCGCCCACCAACTGTTCGACGATATTCCTATATGGGATACTTTTGCTTGGAACAATCTGATTCAAACCCATCTCACCAGCGGAGATGTGGGGCATGTTATTTCTACTTATCAACAGATGTTGTCTCGAGGGGTTCGCCCCGACAACCACACCCTTCCTCGAGTTATCTGCGCCTCCCGTCACTATGGTGATCTGCAGCTTGGCAAGCAGCTCCATGCTCAAGCCTTCAAACTTGGGCTCTTTTCTAACCTCTATGTATTTACTTCCTTGATTGAGCTGTATGGGATTCTTGACAGTGCTGACACTGCAAGGTGGCTCCATGACAAGTCGGCTTGCAGAAACGCTGTTTCTTGGACCATGTTAGCCAAGCTGTACTTGATGGAAGATAAACCCAGTTTTTCCATAGACTTGTTTTACCAAATGGTGGAGTTGGCGGCTGATATTGATGCAGTGGCATTGGCCACGGCTCTTGGTGCCTGTGGTGCACGTAAACTGCTGCAACACGGAAGAAATATCCACCATGTCGCCAGAATTCATGGCTTGGAATTTGATGTCTTGGTCAGTAATTGCCTGTTGAAAATGTACCTTGACTGTAGCAGTATCAAAGATGCTAGGGGGTTGTTCAATCGAATGCCGTTCAGAGATATCATTTCGTGGACAGACCTCATCCATTTTTATGTTAAGAATGGTGGAATCAATGAGGCCTTAA

mRNA sequence

ATGAATCTCCTCCTCTCCACCCCCATTCATCGTCTTCCTCTTACTCAAAAACCTAATCACACATACCATCGCCACCGACTCTTTAATAATCCCCCTCATGTTCGCACCACGACTGCTGAGAAGAATGCTCATTTATGCGTCGCCCACCAACTGTTCGACGATATTCCTATATGGGATACTTTTGCTTGGAACAATCTGATTCAAACCCATCTCACCAGCGGAGATGTGGGGCATGTTATTTCTACTTATCAACAGATGTTGTCTCGAGGGGTTCGCCCCGACAACCACACCCTTCCTCGAGTTATCTGCGCCTCCCGTCACTATGGTGATCTGCAGCTTGGCAAGCAGCTCCATGCTCAAGCCTTCAAACTTGGGCTCTTTTCTAACCTCTATGTATTTACTTCCTTGATTGAGCTGTATGGGATTCTTGACAGTGCTGACACTGCAAGGTGGCTCCATGACAAGTCGGCTTGCAGAAACGCTGTTTCTTGGACCATGTTAGCCAAGCTGTACTTGATGGAAGATAAACCCAGTTTTTCCATAGACTTGTTTTACCAAATGGTGGAGTTGGCGGCTGATATTGATGCAGTGGCATTGGCCACGGCTCTTGGTGCCTGTGGTGCACGTAAACTGCTGCAACACGGAAGAAATATCCACCATGTCGCCAGAATTCATGGCTTGGAATTTGATGTCTTGACCTCATCCATTTTTATGTTAAGAATGGTGGAATCAATGAGGCCTTAA

Coding sequence (CDS)

ATGAATCTCCTCCTCTCCACCCCCATTCATCGTCTTCCTCTTACTCAAAAACCTAATCACACATACCATCGCCACCGACTCTTTAATAATCCCCCTCATGTTCGCACCACGACTGCTGAGAAGAATGCTCATTTATGCGTCGCCCACCAACTGTTCGACGATATTCCTATATGGGATACTTTTGCTTGGAACAATCTGATTCAAACCCATCTCACCAGCGGAGATGTGGGGCATGTTATTTCTACTTATCAACAGATGTTGTCTCGAGGGGTTCGCCCCGACAACCACACCCTTCCTCGAGTTATCTGCGCCTCCCGTCACTATGGTGATCTGCAGCTTGGCAAGCAGCTCCATGCTCAAGCCTTCAAACTTGGGCTCTTTTCTAACCTCTATGTATTTACTTCCTTGATTGAGCTGTATGGGATTCTTGACAGTGCTGACACTGCAAGGTGGCTCCATGACAAGTCGGCTTGCAGAAACGCTGTTTCTTGGACCATGTTAGCCAAGCTGTACTTGATGGAAGATAAACCCAGTTTTTCCATAGACTTGTTTTACCAAATGGTGGAGTTGGCGGCTGATATTGATGCAGTGGCATTGGCCACGGCTCTTGGTGCCTGTGGTGCACGTAAACTGCTGCAACACGGAAGAAATATCCACCATGTCGCCAGAATTCATGGCTTGGAATTTGATGTCTTGACCTCATCCATTTTTATGTTAAGAATGGTGGAATCAATGAGGCCTTAA

Protein sequence

MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFMLRMVESMRP

Homology

[Close]

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-19
Identity = 58/185 (31.35%), Postives = 92/185 (49.73%), Query Frame = 1


Query: 48  AHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRH 107
           A Q+FDD+P    F WN +I+ +  +      +  Y  M    V PD+ T P ++ A   
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 108 YGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSAC--RNAVSWT 167
              LQ+G+ +HAQ F+LG  ++++V   LI LY       +AR + +      R  VSWT
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191

Query: 168 MLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIH 227
            +   Y    +P  ++++F QM ++    D VAL + L A    + L+ GR+IH      
Sbjct: 192 AIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251

Query: 228 GLEFD 231
           GLE +
Sbjct: 252 GLEIE 256

[Close]

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-19
Identity = 60/196 (30.61%), Postives = 101/196 (51.53%), Query Frame = 1


Query: 47  VAHQLFDDIPIWDT--FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICA 106
           VAH++FD +   D+  FAWN+LI  +   G     ++ Y QM   GV+PD  T PRV+ A
Sbjct: 145 VAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKA 204

Query: 107 SRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSW 166
               G +Q+G+ +H    K G   ++YV  +L+ +Y        AR + D    ++ VSW
Sbjct: 205 CGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSW 264

Query: 167 TMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKL-LQHGRNIHHVAR 226
             +   YL       ++D+F  MV+   + D VA+++ L    AR L  +HGR +H    
Sbjct: 265 NSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL----ARVLSFKHGRQLHGWVI 324

Query: 227 IHGLEFDVLTSSIFML 240
             G+E+++  ++  ++
Sbjct: 325 RRGMEWELSVANALIV 336

[Close]

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 57/202 (28.22%), Postives = 99/202 (49.01%), Query Frame = 1


Query: 25  HRLFNNPPH--VRTTTA-----EKNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVG 84
           H++F+  PH  V + TA         ++  A +LFD+IP+ D  +WN +I  +  +G+  
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 85  HVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLI 144
             +  ++ M+   VRPD  T+  V+ A    G ++LG+Q+H      G  SNL +  +LI
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 145 ELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAV 204
           +LY      +TA  L ++   ++ +SW  L   Y   +    ++ LF +M+      + V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368

Query: 205 ALATALGACGARKLLQHGRNIH 220
            + + L AC     +  GR IH
Sbjct: 369 TMLSILPACAHLGAIDIGRWIH 390

[Close]

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-18
Identity = 61/198 (30.81%), Postives = 95/198 (47.98%), Query Frame = 1


Query: 48  AHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRH 107
           A QLFD++   D F WN +I+   + G     +  Y +M+  GV+ D  T P VI +   
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 108 YGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTML 167
              L+ GK++HA   KLG  S++YV  SLI LY  L  A  A  + ++   R+ VSW  +
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 168 AKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGL 227
              YL       S+ LF +M++     D  +  +ALGAC      + G+ IH     H +
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH----CHAV 262

Query: 228 EFDVLTSSIFMLRMVESM 246
              + T  + ++  +  M
Sbjct: 263 RSRIETGDVMVMTSILDM 276

[Close]

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-17
Identity = 53/191 (27.75%), Postives = 92/191 (48.17%), Query Frame = 1


Query: 41  KNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPR 100
           K A +  A   F +  + +   WN ++  +    D+ +    ++QM    + P+ +T P 
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495

Query: 101 VICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRN 160
           ++      GDL+LG+Q+H+Q  K     N YV + LI++Y  L   DTA  +  + A ++
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKD 555

Query: 161 AVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHH 220
            VSWT +   Y   +    ++  F QM++     D V L  A+ AC   + L+ G+ IH 
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615

Query: 221 VARIHGLEFDV 232
            A + G   D+
Sbjct: 616 QACVSGFSSDL 626

[Close]

BLAST of Cp4.1LG08g06570 vs. TrEMBL
Match: A0A0A0L9N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G722890 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 7.4e-110
Identity = 190/243 (78.19%), Postives = 214/243 (88.07%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           MNLLLST  H LP+TQKPNH YHRH  FNN PHVRT T E  A+LCVAHQ+FDDIPIWDT
Sbjct: 1   MNLLLSTHTHCLPITQKPNHAYHRHPPFNNLPHVRTMTVENYANLCVAHQVFDDIPIWDT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWNNLIQTHLT+GD+GHVISTY+QML RGVRPD HTLPR+ICA+R YGDLQ+GKQLHAQ
Sbjct: 61  FAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGDLQVGKQLHAQ 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           AFKLG  SNLYV TSLIELYGILDSADTA+WLHDKS CRN+VSWT+LAKLYL EDKPS +
Sbjct: 121 AFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKLYLREDKPSLA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFMLR 240
           +DLFYQMVELA DIDAVALATA+GACGA K+L HGRNIHH+AR+HGLEF++L S+  +  
Sbjct: 181 LDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIHHLARVHGLEFNILVSNSLLKM 240

Query: 241 MVE 244
            ++
Sbjct: 241 YID 243

[Close]

BLAST of Cp4.1LG08g06570 vs. TrEMBL
Match: M5XS66_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020455mg PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 7.5e-54
Identity = 118/238 (49.58%), Postives = 153/238 (64.29%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           M +L S  I RL +T+KP  T      + +P + +T+T      + V  +L + +P  DT
Sbjct: 1   MEVLASAQIQRLIVTEKPIDTAQ----YKHPRNSKTST-----RVAVTRKLLEKMPHSDT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWN LIQTH+ +    + +STY QML RGVRPD HTLPR++ ASR   DL LGKQLH  
Sbjct: 61  FAWNKLIQTHIANAHFDNALSTYHQMLLRGVRPDRHTLPRILSASRLSVDLPLGKQLHGH 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           A KLG   + YV  +LIELYG L S D A+ L DKS  +++VSWTMLA+LY+ME KP  +
Sbjct: 121 ALKLGCSDDRYVVAALIELYGRLHSVDAAKGLFDKSPVKDSVSWTMLARLYIMEGKPGMA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFM 239
           + +F  MVE  A ID VALATA GACG  K +  G+ +H VA+  GLEFDVL S+  +
Sbjct: 181 LHVFDGMVESGAQIDPVALATAAGACGMLKSVIDGKKVHRVAKERGLEFDVLVSNTLL 229

[Close]

BLAST of Cp4.1LG08g06570 vs. TrEMBL
Match: A5AJ01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011875 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.8e-54
Identity = 108/217 (49.77%), Postives = 151/217 (69.59%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTT--AEKNAHLCVAHQLFDDIPIW 60
           M++L ST    + + QK  +  H      NP ++R+    ++K+    + HQLFD+IP+ 
Sbjct: 96  MDVLSSTQSQSIFVKQKSTNATH----CKNPSNLRSXVRMSQKSIDFGLTHQLFDEIPVS 155

Query: 61  DTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLH 120
           +TFAWNNLIQTHLT+GD G V+STY+QML RGVRPD HT+PR++ A+RH      GKQ+H
Sbjct: 156 NTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIPRILTAARHTSSFSFGKQVH 215

Query: 121 AQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPS 180
             A KLGL S  YV ++L+E+YG LD A+ A+ +  KSA RN+VSWT++++LY+MEDKP 
Sbjct: 216 GHALKLGLSSESYVISALLEMYGRLDGABAAKLVFCKSARRNSVSWTLISRLYIMEDKPG 275

Query: 181 FSIDLFYQMVELAADIDAVALATALGACGARKLLQHG 216
            ++D+F QMVE  ++ID +AL TA+ ACG  K L  G
Sbjct: 276 LAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLPGG 308

[Close]

BLAST of Cp4.1LG08g06570 vs. TrEMBL
Match: B9GYU2_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15840g PE=4 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 105/187 (56.15%), Postives = 130/187 (69.52%), Query Frame = 1


Query: 60  TFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHA 119
           TFAWNNLI THL++ D G  +S Y  M+ RG  PD  TLPRV+ ASR  GDL LGKQLH 
Sbjct: 34  TFAWNNLIHTHLSNRDPGGALSIYHHMMMRGACPDRRTLPRVLTASRICGDLFLGKQLHG 93

Query: 120 QAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSF 179
           QA KLG F   YV T+LIE+YG LD  +  +WL DKS  RN+V+WTM+ KLYLME+KP  
Sbjct: 94  QAIKLGFFDEHYVITALIEIYGRLDGIEAGKWLFDKSPRRNSVAWTMILKLYLMENKPDL 153

Query: 180 SIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFML 239
           +I++FYQMVEL A ID+V L TA GACG  K ++HGR +H VAR   LE D+L S+  + 
Sbjct: 154 AINVFYQMVELNARIDSVVLITAAGACGLLKSVEHGRRVHDVARKFRLESDILVSNSLLK 213

Query: 240 RMVESMR 247
             ++  R
Sbjct: 214 MQIDCQR 220

[Close]

BLAST of Cp4.1LG08g06570 vs. TrEMBL
Match: A0A067JUQ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23067 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.1e-52
Identity = 108/214 (50.47%), Postives = 141/214 (65.89%), Query Frame = 1


Query: 33  HVRTTTAE---KNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSR 92
           H+RT  A    K+  L  AHQ+ D+IP+ DTFAWNNLI THLT+ D    +S Y  ML R
Sbjct: 30  HLRTLRAPFRVKSGALSFAHQVLDEIPLSDTFAWNNLIHTHLTNRDPAGALSIYLCMLLR 89

Query: 93  GVRPDNHTLPRVICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTA 152
           G R D  T PRV+ ASR   +L LGKQLH Q  KLG  S+ YV T+L+E+YG LD    A
Sbjct: 90  GARLDRRTFPRVLTASRLCSNLCLGKQLHGQVLKLGFSSDHYVTTALMEMYGRLDGTHAA 149

Query: 153 RWLHDKSACRNAVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGAR 212
           +WL DKS  +N++SWTMLAKLYL  ++P  ++ +FYQM++    ID VAL TA+ ACG  
Sbjct: 150 KWLFDKSPAKNSISWTMLAKLYLTHNQPDLALHVFYQMMDSNIQIDPVALMTAICACGML 209

Query: 213 KLLQHGRNIHHVARIHGLEFDVLTSSIFMLRMVE 244
           K LQ G N+H +AR  GLEFD+L ++  +   ++
Sbjct: 210 KSLQQGGNVHEIARKCGLEFDILVANSLLKMYID 243

[Close]

BLAST of Cp4.1LG08g06570 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-20
Identity = 58/185 (31.35%), Postives = 92/185 (49.73%), Query Frame = 1


Query: 48  AHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRH 107
           A Q+FDD+P    F WN +I+ +  +      +  Y  M    V PD+ T P ++ A   
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 108 YGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSAC--RNAVSWT 167
              LQ+G+ +HAQ F+LG  ++++V   LI LY       +AR + +      R  VSWT
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191

Query: 168 MLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIH 227
            +   Y    +P  ++++F QM ++    D VAL + L A    + L+ GR+IH      
Sbjct: 192 AIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251

Query: 228 GLEFD 231
           GLE +
Sbjct: 252 GLEIE 256

[Close]

BLAST of Cp4.1LG08g06570 vs. TAIR10
Match: AT4G25270.1 (AT4G25270.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-20
Identity = 60/196 (30.61%), Postives = 101/196 (51.53%), Query Frame = 1


Query: 47  VAHQLFDDIPIWDT--FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICA 106
           VAH++FD +   D+  FAWN+LI  +   G     ++ Y QM   GV+PD  T PRV+ A
Sbjct: 145 VAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKA 204

Query: 107 SRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSW 166
               G +Q+G+ +H    K G   ++YV  +L+ +Y        AR + D    ++ VSW
Sbjct: 205 CGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSW 264

Query: 167 TMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKL-LQHGRNIHHVAR 226
             +   YL       ++D+F  MV+   + D VA+++ L    AR L  +HGR +H    
Sbjct: 265 NSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL----ARVLSFKHGRQLHGWVI 324

Query: 227 IHGLEFDVLTSSIFML 240
             G+E+++  ++  ++
Sbjct: 325 RRGMEWELSVANALIV 336

[Close]

BLAST of Cp4.1LG08g06570 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-20
Identity = 57/202 (28.22%), Postives = 99/202 (49.01%), Query Frame = 1


Query: 25  HRLFNNPPH--VRTTTA-----EKNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVG 84
           H++F+  PH  V + TA         ++  A +LFD+IP+ D  +WN +I  +  +G+  
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 85  HVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLI 144
             +  ++ M+   VRPD  T+  V+ A    G ++LG+Q+H      G  SNL +  +LI
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 145 ELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAV 204
           +LY      +TA  L ++   ++ +SW  L   Y   +    ++ LF +M+      + V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368

Query: 205 ALATALGACGARKLLQHGRNIH 220
            + + L AC     +  GR IH
Sbjct: 369 TMLSILPACAHLGAIDIGRWIH 390

[Close]

BLAST of Cp4.1LG08g06570 vs. TAIR10
Match: AT4G35130.1 (AT4G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-19
Identity = 61/198 (30.81%), Postives = 95/198 (47.98%), Query Frame = 1


Query: 48  AHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRH 107
           A QLFD++   D F WN +I+   + G     +  Y +M+  GV+ D  T P VI +   
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 108 YGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTML 167
              L+ GK++HA   KLG  S++YV  SLI LY  L  A  A  + ++   R+ VSW  +
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 168 AKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGL 227
              YL       S+ LF +M++     D  +  +ALGAC      + G+ IH     H +
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIH----CHAV 262

Query: 228 EFDVLTSSIFMLRMVESM 246
              + T  + ++  +  M
Sbjct: 263 RSRIETGDVMVMTSILDM 276

[Close]

BLAST of Cp4.1LG08g06570 vs. TAIR10
Match: AT4G13650.1 (AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-19
Identity = 53/191 (27.75%), Postives = 92/191 (48.17%), Query Frame = 1


Query: 41  KNAHLCVAHQLFDDIPIWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPR 100
           K A +  A   F +  + +   WN ++  +    D+ +    ++QM    + P+ +T P 
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495

Query: 101 VICASRHYGDLQLGKQLHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRN 160
           ++      GDL+LG+Q+H+Q  K     N YV + LI++Y  L   DTA  +  + A ++
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKD 555

Query: 161 AVSWTMLAKLYLMEDKPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHH 220
            VSWT +   Y   +    ++  F QM++     D V L  A+ AC   + L+ G+ IH 
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615

Query: 221 VARIHGLEFDV 232
            A + G   D+
Sbjct: 616 QACVSGFSSDL 626

[Close]

BLAST of Cp4.1LG08g06570 vs. NCBI nr
Match: gi|778682994|ref|XP_004137884.2| (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 1.1e-109
Identity = 190/243 (78.19%), Postives = 214/243 (88.07%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           MNLLLST  H LP+TQKPNH YHRH  FNN PHVRT T E  A+LCVAHQ+FDDIPIWDT
Sbjct: 1   MNLLLSTHTHCLPITQKPNHAYHRHPPFNNLPHVRTMTVENYANLCVAHQVFDDIPIWDT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWNNLIQTHLT+GD+GHVISTY+QML RGVRPD HTLPR+ICA+R YGDLQ+GKQLHAQ
Sbjct: 61  FAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGDLQVGKQLHAQ 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           AFKLG  SNLYV TSLIELYGILDSADTA+WLHDKS CRN+VSWT+LAKLYL EDKPS +
Sbjct: 121 AFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKLYLREDKPSLA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFMLR 240
           +DLFYQMVELA DIDAVALATA+GACGA K+L HGRNIHH+AR+HGLEF++L S+  +  
Sbjct: 181 LDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIHHLARVHGLEFNILVSNSLLKM 240

Query: 241 MVE 244
            ++
Sbjct: 241 YID 243

[Close]

BLAST of Cp4.1LG08g06570 vs. NCBI nr
Match: gi|700203537|gb|KGN58670.1| (hypothetical protein Csa_3G722890 [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 1.1e-109
Identity = 190/243 (78.19%), Postives = 214/243 (88.07%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           MNLLLST  H LP+TQKPNH YHRH  FNN PHVRT T E  A+LCVAHQ+FDDIPIWDT
Sbjct: 1   MNLLLSTHTHCLPITQKPNHAYHRHPPFNNLPHVRTMTVENYANLCVAHQVFDDIPIWDT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWNNLIQTHLT+GD+GHVISTY+QML RGVRPD HTLPR+ICA+R YGDLQ+GKQLHAQ
Sbjct: 61  FAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGDLQVGKQLHAQ 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           AFKLG  SNLYV TSLIELYGILDSADTA+WLHDKS CRN+VSWT+LAKLYL EDKPS +
Sbjct: 121 AFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKLYLREDKPSLA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFMLR 240
           +DLFYQMVELA DIDAVALATA+GACGA K+L HGRNIHH+AR+HGLEF++L S+  +  
Sbjct: 181 LDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNIHHLARVHGLEFNILVSNSLLKM 240

Query: 241 MVE 244
            ++
Sbjct: 241 YID 243

[Close]

BLAST of Cp4.1LG08g06570 vs. NCBI nr
Match: gi|659130420|ref|XP_008465161.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.9e-107
Identity = 188/235 (80.00%), Postives = 208/235 (88.51%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           MNLLLST  H LP+TQKP H YHRH  FNN PHVRTTT E  A LCVAHQ+FD+IPIWDT
Sbjct: 1   MNLLLSTHTHCLPITQKPYHAYHRHPPFNNLPHVRTTTVENYADLCVAHQVFDEIPIWDT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWNNLIQTHLT+GD GHVIS Y+QML RGVRPD HTLPR+ICA+R YGDL +GKQLHAQ
Sbjct: 61  FAWNNLIQTHLTNGDWGHVISIYRQMLFRGVRPDKHTLPRIICATRQYGDLPVGKQLHAQ 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           AFKLG  S+LYV TSLIELYGILDSADTA+WLHDKS CRN+VSWT+LAKLYL EDKPSF+
Sbjct: 121 AFKLGFSSDLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTILAKLYLREDKPSFA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSS 236
           IDLFYQMVELA DID+VALATA+GACGA K+L HGRNIHH+ARIHGLEF++L S+
Sbjct: 181 IDLFYQMVELADDIDSVALATAIGACGALKMLHHGRNIHHLARIHGLEFNILVSN 235

[Close]

BLAST of Cp4.1LG08g06570 vs. NCBI nr
Match: gi|1009160317|ref|XP_015898285.1| (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 258.8 bits (660), Expect = 9.4e-66
Identity = 138/248 (55.65%), Postives = 173/248 (69.76%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAE----KNAHLCVAHQLFDDIP 60
           M++L ST IHR   T  P+HT H+    N+ P++   T      K+  L + H  FD+IP
Sbjct: 1   MDVLPSTHIHRFVSTVVPSHTPHQ---LNHSPYLHCNTRVPVKLKSGELLLTHHAFDEIP 60

Query: 61  IWDTFAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQ 120
           + DTFAWNNLIQTHLT GD   V STY QML RGV PD HTLPRV+ ASR  G L LGKQ
Sbjct: 61  VSDTFAWNNLIQTHLTHGDFQLVFSTYHQMLLRGVHPDRHTLPRVLAASRLSGYLFLGKQ 120

Query: 121 LHAQAFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSA-CRNAVSWTMLAKLYLMED 180
           LH QA KLG  S+ YV T+L+E+YG LD+ DTARWL DKS+  RN+VSWT+LAKLY+ E 
Sbjct: 121 LHGQALKLGFSSDQYVVTALLEIYGRLDTVDTARWLLDKSSPSRNSVSWTLLAKLYIEEG 180

Query: 181 KPSFSIDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSS 240
           +PS +I LFYQM++  A+ID+VALATA+ AC + K L+ GR +H VAR  GLEFDVL S+
Sbjct: 181 QPSSAIHLFYQMLDFGAEIDSVALATAIVACASLKSLKQGRKVHQVARNCGLEFDVLVSN 240

Query: 241 IFMLRMVE 244
             +   ++
Sbjct: 241 SLLKMYID 245

[Close]

BLAST of Cp4.1LG08g06570 vs. NCBI nr
Match: gi|225441828|ref|XP_002278166.1| (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-59
Identity = 119/243 (48.97%), Postives = 166/243 (68.31%), Query Frame = 1


Query: 1   MNLLLSTPIHRLPLTQKPNHTYHRHRLFNNPPHVRTTTAEKNAHLCVAHQLFDDIPIWDT 60
           M++L ST    + + QK  +  H     N   HVR +  +K+    + HQLFD+IP+ +T
Sbjct: 1   MDVLSSTQSQSIFVKQKSTNATHCKNPSNLRSHVRMS--QKSIDFGLTHQLFDEIPVSNT 60

Query: 61  FAWNNLIQTHLTSGDVGHVISTYQQMLSRGVRPDNHTLPRVICASRHYGDLQLGKQLHAQ 120
           FAWNNLIQTHLT+GD   V+STY+QML RGVRPD HT+PR++ A+RH      GKQ+H  
Sbjct: 61  FAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTSSFSFGKQVHGH 120

Query: 121 AFKLGLFSNLYVFTSLIELYGILDSADTARWLHDKSACRNAVSWTMLAKLYLMEDKPSFS 180
           A KLGL S  YV ++L+E+YG LD A+ A+ +  KSA RN+VSWT++++LY+MEDKP  +
Sbjct: 121 ALKLGLSSESYVISALLEMYGRLDGANAAKLVFCKSARRNSVSWTLISRLYIMEDKPGLA 180

Query: 181 IDLFYQMVELAADIDAVALATALGACGARKLLQHGRNIHHVARIHGLEFDVLTSSIFMLR 240
           +D+F QMVE  ++ID +AL TA+ ACG  K LQ GR +H +A+  GLE DVL S+  +  
Sbjct: 181 VDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYVHEIAKKCGLEADVLVSNSLLKM 240

Query: 241 MVE 244
            ++
Sbjct: 241 YID 241

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP224_ARATH	2.3e-19	31.35	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN...	[more]
PP337_ARATH	8.6e-19	30.61	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
PPR21_ARATH	1.1e-18	28.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP350_ARATH	7.3e-18	30.81	Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop...	[more]
PP307_ARATH	1.6e-17	27.75	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG08g06570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9N4_CUCSA	7.4e-110	78.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G722890 PE=4 SV=1	[more]
M5XS66_PRUPE	7.5e-54	49.58	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020455mg PE=4 SV=1	[more]
A5AJ01_VITVI	9.8e-54	49.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011875 PE=4 SV=1	[more]
B9GYU2_POPTR	1.8e-52	56.15	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15840g P...	[more]
A0A067JUQ1_JATCU	3.1e-52	50.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23067 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g06570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12770.1	1.3e-20	31.35	mitochondrial editing factor 22	[more]
AT4G25270.1	4.8e-20	30.61	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	6.3e-20	28.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G35130.1	4.1e-19	30.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G13650.1	9.1e-19	27.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG08g06570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682994\|ref\|XP_004137884.2\|	1.1e-109	78.19	PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ...	[more]
gi\|700203537\|gb\|KGN58670.1\|	1.1e-109	78.19	hypothetical protein Csa_3G722890 [Cucumis sativus]	[more]
gi\|659130420\|ref\|XP_008465161.1\|	4.9e-107	80.00	PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-...	[more]
gi\|1009160317\|ref\|XP_015898285.1\|	9.4e-66	55.65	PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ...	[more]
gi\|225441828\|ref\|XP_002278166.1\|	1.3e-59	48.97	PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06570.1	Cp4.1LG08g06570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 162..189 score: 0.83coord: 62..91 score:
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 62..94 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 160..194 score: 6.347coord: 59..93 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 48..238 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g06570	CmaCh06G017540	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g06570	CmoCh06G017390	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g06570	Cla017201	Watermelon (97103) v1	cpewmB831
Cp4.1LG08g06570	ClCG10G013040	Watermelon (Charleston Gray)	cpewcgB769
Cp4.1LG08g06570	Lsi03G012690	Bottle gourd (USVL1VR-Ls)	cpelsiB709
Cp4.1LG08g06570	Bhi11G001266	Wax gourd	cpewgoB1077
Cp4.1LG08g06570	Carg23320	Silver-seed gourd	carcpeB0389

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g06570	Silver-seed gourd	carcpeB1148
Cp4.1LG08g06570	Cucurbita pepo (Zucchini)	cpecpeB490
Cp4.1LG08g06570	Cucurbita maxima (Rimu)	cmacpeB293
Cp4.1LG08g06570	Cucurbita moschata (Rifu)	cmocpeB256
Cp4.1LG08g06570	Melon (DHL92) v3.5.1	cpemeB798
Cp4.1LG08g06570	Melon (DHL92) v3.6.1	cpemedB939