Cp4.1LG08g06510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g06510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding 40
Location	Cp4.1LG08 : 112624 .. 125064 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGCTTCTCCTCCCCTGAATCCCAAGCAATCTCGCTCACTCTCAGCTCGCTGTACGATTCCCATCGACATCAGTCTCCATCCCTCGTCTCTGAATGCAGAATCGTCACTGGTCGACTCGAGAATCGCTCCTCTCTATTCCGACTTATCGTTCTCCTTCGTCCCTCCCCTGTAAGTCTCTCACTCATTCGGCTGCTTCAAGGTTCGTTTGTGACTATTGCGTATTTTTGTGAAGACTTGGTGTGGTTACGATTGAATGATTGTTTCTTTTTTGTTTTGTTTTTATCACCTCAGATAGCCATTAGCAACAAATATCTACTTTATTCTAGCCCGAGCTACCGTAACTAGGAAGTGAGACAACAATTTTTTTGAGTATATGCTTTCAGTGATAGAGATGACATTTTTCTAATTTGGTTTTCTTTTGGTGGCAGGCTGAGGCTTCTTGGTGAACTTTTAGCAGAGGAAAGCGGTGCGACACCATTTTCATATAATAGATTTAAACAGACTGTATCTCTGTAAACGAAGAATTTTGTTGATCCTCATCTTCCAAGATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTACGGTGCTCTTACCACTATTTATTGTTTTCATCTTACATTATAATTTGTAATGTATTGTTATGTATGCTAGGTCTACAAATTCTTTAAGATTGGTAGTTGAAATTGATGATTCTTTAATGTTTCATTTTCTTGAAAACGCAAGTAGTTCTGTAAGTTCTAAACTGTCGAACTTTTGTATTAAAGTTTTGAGCATCTACACAATTAGACATACTCTAGTTTAAACGAGCCTCACAAAAGGTACTGAATCAACATTATAGGAATACTAAATCAACATTTAATGAGAATGACATAAATCAGCTCTGTAAGTCGTAGGTCCAAAAACAGTGATACAGTTCTTCTCTTTAGAGATGTAATTTAGACAATTCTGTGGCACTAGCCTATATGTCTATAAAAGATTTGTCTAAATCAAATGTGGAGAAAATGAAACTCTTTGCGATTATGTGGATGATGTTCTTGAATACTTGCCCACAAAAATAGGTTAATCAGACAATTCCAACAATCCAAGGAGAAAATATATACAATCCTTAAACGGAAAAGGTACGGATATTCTTTGGATACCTTCTGCACTGCATCACCTGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTAGGTTCTTGATTATCCATTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACTAAGTTTCTATGGAGACAATTGTATTTGGTTGTACATTTTTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTTGTTGTTTACAAATAAAATGATAATTTATATGTTTGAAGAGAAATTTAAAACTTATATGCTTAAAGTGAAGTTCAATTTTGAATGTTGCCTCTCGTGACCTCCTGAGGTTTTTTTGGTGACTTTGCTCAGTAGTTGTTGCTAGTGCTCCTTGCTCATGATGGTTGCTGGTCTTCTTTCTAGAAAAATAGAAACAAAACCTTCTCTTGTGGTTTTGGTCCAAGGAAGAAACGTAGACGATGTAGGATTAAGGAATCTCATTTAAAATAAAAGGTTCGAGTTAGTTCTTGAGGAAGTTATGATTGTTTGGCTAACTAACTCCCTTGAGTATCTGCTGCTGCTTGCCCTGCACTCTCCAAAGTTCTATTGAAAGGTTGACTGTTGTGATGGGTTTATTTGGACTCAAAAGATTACAAACAAAAGAGGCTCCTTTCTTGAGATCATCAAGGTTTATAGATTGGGAGGTAAGAGAAATCTTGTTGTTCCTTCTAATAGAGATTAGATGGTTGGAAGTCCTTCCAGGAACTTCTTATAGAGTTTTTGGATGAAACATGAAAACCAAATGAGAAGCCAAAGAAGCTCTAGAATAAAACCCTCATGGAAGGGAAGTGCGAAGGCTCCTCCTTTGAAGAGGTGTTGAAAAATGAACCAATGAATCTTGTTGTTCCTTCTGATAGAGATTAGATTGGTTGGACGTCCTTCAAGGAACTTCTTATAAAGATTTTGAATGAAACATGAAAACCAAATTAGAAGCCAAAGAAGCTCTCAAATAAAACCCTCATGGAAGGGAAGTGCGAAGGCTCCTCCTTTGCAGAGGTGTTGAAAAATAAACCAATAAGGAGAAAAAGATTCCTCAAGTGTGTTAGAGGAGGAGGGTTTTAGTCTTATAGAAGCGGATAAGAAGGAAGTTAGATTTTTTAAATGGGTTAAACCGTTGGTTATTACTAGAAGAGACTTCCACGATGATTGGGCAAAATTTTTGGAAACCCTTGACAAGCAGCCGGAGGAATCTTTCACTGTTAATCTTTTTTTTCCCTGATAAAGCCCTTTTGTTGTGCCCCTTGACAAAGTGTACAAGGCTACTAGCTATGATTGTAAGGGGGTTACATTAGGAGCCTTTACAATGAAGTTAGAAAGACGGGTCCCTCGGAAGCACGAGAGAACTACAAGGGTCCCCTCTTACAGGGGTTGGATAAAATTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTATGGAGCCTAGCCAGGTTCAAGGTGATAATTGATTGCTTTGAGGGGATTTTGTGGACTATGCAAATCAAAGCTCTTCCTCATTGAATGCTTAGAAGTTGCAATTGAAGTGCAAGGAGTTACTGTGGATTCATCCCCCAATGAAAGGAAAATCCTTGATAGAGAACAAGTGTCTTCAGCCCAGATGATTGTGCTCCAAGATGGCTGGTTGTTGGCCTAAAAGAAAGTTGAAGTTCACAGTGGACTTTTGTCCAAGCAGCCACAAGGTTCCATGACAATGACATGAGATCCGGTTCTAATCTGATAAATTTGTGGAGGTTAAGGGACAGTTTTTTTTTTTTTTTTACTCATCAGTAACTAGTTTTTACCCGAATATTCCAATGTTGCAGGGAGAGGTTTCAGTCTTCTACCTAAATTTGAATCGCATGTTCGATAAGATTGACGGTGGACCCCACACGGTTGATCGTAGCCTTCGCTCAAGCTCCACACAAATACAGACTCCCCTGTCAAGTCAAAGTAACAGTGGTCCTTTGCATCAGGGAGTCATTCCAAATTTCCCTCTAATTTCAGGAGGAAAGGGAAATTAGTCAAATTTGTGGAAGATTTAGAGAAGGGTCGTGGAAAAGTCATTTTTTTTACAAAGGGAAAATTTTCTCTACAACCAATACCAAGGCTAAGCTTTGCAATAAAAATTTGATGATGAAAAAGATGTGGTAAAGGAAAACGAAAGAGGGGTAGAGGATTATGTAGAGATCCTTGAGAATTTTCAGCTTTGTTTTCAAGAAAATGAAGGCTTTCCCTTTAGCTTTAGAAGTGGATACAACCTTGGCTATTGAGAAAAAAAAATATGGGATGATGGTACTATAATGAAAGTAGATCACGTAGAGGAAACTCAAGAGGAAAGGAAAAGGAAAAAAGTCAAAAGGGTTGGTGGAGTTATGTTCCTTCACCGTTTAGCAGAAGTCTGGTTAAAGCTTTGAAAAGATGGAAATTGTGTATGTTCCTAGAAGAGGCAATCCAATGGGCAAGAAGAACGTTAGATAGTTGAATGGCATTTTGAGAACTTGGGAGAATGAACCAGAGGAAGTAGATGAAGGGGTTTGTCTCACGAAGACAGTCTTATGGAACGTTAGAGGCCTTGGTGCTCCCTCCAAAAAGTGCTTGTTAAGGAGTTTTTAGTTAAAATTAGTCTGGATGTTGTGGTTCAATTTGGTTGAATGTTCCTTGATGTTTCTTATTAAAAAAAAAAAAAAAAAAAAAACTATATGTTTAACCTATGGAAGCACATTTGAAGTAAATACTCACAACTTCCTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCGGCACCACCGTCATCGCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGATTGATAAATGTAGGTTGCGCATATTTGATTCACTTTAAGTACATAGATGCATTTGTGCACTCATGGTTTGTTGGTGGAATGCGGTTATTTTGAAGATTTTGGAGGATGCTGGGCAGTGTATTTAGATACTTACCTCTTTGTTGCTTCGAATTTTATTTTCCTTGGTACACCACACAATTTACTTTATGAAAAGATTGAATAGAAGGGCATTTTCGTGAAAACTTAAGCAGTGATATAGGAGTAATTTTTTTTTTTTCCCTGATCAAGTATAATCTGCAGAAAACTCTCACCTTGTTGAGCAAGATAATCTAATGTAAGGATAGCATGGTTAAATGAAAGGTTTGGCACCAAACTCTTAGTATGAAGACTAACTACCATCAAAGGTCCAAATTTAGCATCTTCCCTATTCTCTCAAGTGCTAAATTCGTAAGCAGCTTGCTAGGGATGGCCATTCCTCCATAACAGCATCAGAAAAGTTTCTCCCATATTTGTGATTCCATCCTCTCAAAGGATTGGTCCAACATTGACAAATAAGGGAGCCCTTGGTGTTTGCAATGCTAAAGACAGTTGAAAAGGCCAAGTGGGGAGGAGCATTGATAAGCCAGGGATCCTCCCAAAATAGAACTTTGTCTCCATTACCTACAGCCACCTCTTAACACGTATAGGCCAAGTTACAATAAGAAGTAGAGACCTAGGGACTGAAGTTGAATGGACATTTAGAAGAAGGGTTCAATTCTTCAAAAGAGAGTGGTGAGACCGGTATTTTGTAGCAATGATGCATCTCCACAGTGACATTTTGGTCATTCAAAAACGCCATATACACTTAGCATGAAGGGGCAAATCTTAGCTTTTAAATTTTCTGCCCCAACACCTCCTTTTGTAATGTGTGTAGAGAAGTAGCTTCCTGATTAACAAGGTTATGGCCATTTCCACTTCTAGAACTTTTATAGAAGAAACCCCTGGATATCATTTCCAATCTCCTCACCATCATCCCAGGGTGTTTAAAAATGGACTGCGGATAAAGGGGATGCTTGATTGAACTACTTTGACTAAAGAAACTATGCCTCTGGAGCTGGTAAATTCATAGCCATATCTTGGAATAAATGTTTTAGTTTTTATTTATTTTTTACTTTTATAAGAAATCAATTTTTTATTGAACAAATGAAAGAATACAAGGGTATAAAAAAAAACAAGTTTGAAAGAAGCGGGAGTTCAAAACTAACTACAAAAGGGACTCCCATCCAAAAGAACAAACCAGGCCTAGTTACCAACACCCATAATTTTTTTTTTTTTTTAGATAAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATAGGAAGTAAAAATATTAGACAGTTTACACCAAGATATAGCTTGGTAAGCAACATTGTCGAAAAGTTTTGTGTAGGTCTGTGTCATTTCTGCAAATATTCTCTGATTTCTTTCTTTCCACAGATTCTAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGGCTTTTGCGTTCTTGAAAGGGTGGTACGTTAAGGCCATATCCAAAAAATCCTTTACCTCCCTAGGAAATGTGAGATGTCATCCGAATATATTAAGAAGAATCGTTGTCCATAAATTTTGAGTGTATGTGCATTGCATAAACAAGTGACTTTGTGATTCGTTTGCTTTCTTGCATAGTGGACACCAATTTGGAGAGAGAGTGATGTAAGGCATTCGTTTTTGAAGATTTTCACTTGTGCTGATGGCTTTATGCGCTATTTCCCAAAGGAAGAACTTCACCTTTTTAGGTTGATGTTCTTTCCATATTGTCTTTGCTAGCGTGGGATTTATTGCTTCTACTTTTTCCCCCATGTCCATCATCAAGGATTTTGTAGAAAAGACCCCGTCAGCGCTGGGGAGCCAAGTTAGTGAGTCTTCTTTGTTTGACAATACCACAGGGGCAAGGTCAAGGCTTAATTCGGCCCACTCTGTTGCTTCATTATCCTTTAGATTCCTACCCAGCTTCAAGTCCCAAAATTTGTTGACAACATTCCACGTTTCTTTAATCGTGGCTTTTTTGTTGTGAGAAAGCCTGTACAAAAGTGGATACTTCAAAGCTAGCGTGGTGTTTTCAATCCATGGGTTGGTCCAAAATGATGTGCTTCCCCCATTCCCCACCTTATGGCGAGTTCGGTGGGTGATGAGATTTTGATGTTTCTTTATGTAGTTCCAAGGCCCTTTTGTAGAAGATGGAGGGAGGTGATGTTTGTTTGATGTAGGAGTATATTTAGCCTTTATAAGATTTCGCCATAAGGCCTTTTCTTCATGATGATATCTCCATATCCATTTGGCGAGAAGAGCTGTGTTCTTCTTCCTTATCGAGAGAAGACCAAGACCTCCCTTTTCTGTTGGGAGGTTTATAATATTCCAACGAACAAGGTGTGCATTATCTTTCCACAAGTAATTTCTGAAGAGGCATATGTTCGTATCTTTTGATTTCCTGCTCCTACTCTACACTTTTGTCTAATTGGAAAAGTTTATTGTAATTCCATTGGATTAGGACCCTCTCCCATTTTTGTAAATTTCATACAATTTTTTTCTATAAAAAAGTAATTTTCATGAATTTCTGCGATAAATAATTATAATTATTTATCGTAGTTTGAAGTCATACTGAGAGCATGTTAACAAAAATATGTAATCTTTTTTCACTCTTATGGATGATGGTACCAATTTTTTCTTTTGTCAATTTTGTTGAAGTTGTTACCTATAATCTTTAGTTGCATCCCGTTTATTTTTTTTTCTTTTTGGTAAAAATACTTTCCTTTGTCCTTGTCTTCTTAGTTCTTCTGTATTGTTTGATTTTTATTCTATTCATTTTTTTACTACTTTAAGAAGGTATCTTTCCTTATTTTATATGAGGCCTGATATAATAATCTACTCCCTTTTGTCTTGATACTTACTGATTAATTGGATATAAAATGTGCATTAGGATGTGGAGGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGGTTGCTTTTATCATTAGATAGCTAATTGGCATATGCTTTATTTATATGATTCATCAAATTGACTTGTTTAGTTGTTGCAGTTTAAAATTGCCCCTAAGGTGGTTATTGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGGTACTTTACCATGTGATATTTTAATGCTCAAGTATGAAACACTGCATGTTATTCGTACATTCATTTATTTAAGCTCCATTTTTTGTATATGTTTTAACAAATTATTTAGTGAGGGAAAAAAAAAAGTGCTTTGAAGATGGTTAAACATTTTTCTTAAATAAAAATTTACCACATATGCTTATAAAAAAGGCTTACTGCATAAGAAATTTGACCATGATTTGGTTCCTATTGGTTTTAAATTCAGAATTTCGACAAAGGTAGTTCTAAGACGTTTTGCTTTTGTTTTCTTGGACAATCATGGGCATCTTGTTCCTTGGTGTGTGCAACCTTATTTTCTTGTGAAATATTTGGCTGGAGAGAGATAGGAGGATTTTTAGAAGGGTTGTGTGTCAGTAGACTAGAGAGGTATGGTCCACAACTAGATTTAATGACTCTCTTTGGGTGTCAATGACCAAATGGGTTTGGTATTGCTCTTTTGTCTCTTGTTAGCAAAGTTGTGAATTTCTAGATGCAGATATTTTATGTTTCTGCTTTGTTGACAGCATTTTGGATATCGATGTTCCCTCTTTTGTTGATGCTTGTTGGGTTGGCCAGTGGTCAATAAAGGTTTTGAGAATAATTAAGGGTTTAGAGGGGATGAGTTCAATAAATTTTATTTTCTTTGTTTTAATAAGTTTTTCTTTCATTTCCCTGGTTTAGGGTTGGGTATATGTAGCTACCTTTTTATTTTAATTTACCATTTGAGTATGATAAAAAAAATAATGTTGGAAATTTCATGGATATTGCAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGTTAGTTTCTTTGCCCCAATTCAGCCTGTGTGCATATATGGAAATACACGGCACTGTTGATTATTTTTTCACTATTTGTTATTTTTTCATGAACTGGAAGCCTCAGAATTGATATTAATGAATCTTGGGTAGGGGTTCAAATATGAAGGCAAAGTCGTGAGATGGCAAGAGGATTGGGGGAATTTGGGATGTACTCCGTGTGAATAATTTTTGACGTATTTATGGATGAAAACTCCCCCTTTGACCTCTTACTGTGATGCCCCTTGAAACGGGTGATGTATTATGACGATAAAATGCAAACAAGCTGAGGGCTAGGGGTTGAGAATACCCCTGCCCAAAATCCTACAAAAGCAAAGCCTTTCCATTGTTAATAATCACGAGGTTGTGATTACAAAAGTGGTTTGAACAGACCAAGAGATTTTATGCTGCATAGAGTTATAAAAATAATCCACCAGAGTCGATTTGTCTTTGGAAATTCTTTTGTGTCACTCTTTCCAAATAAGTCAAAGGCCTTTTAAGAAGTTATGTTAAAAGTTTTCTACAAGCTAAAAATCGACACAATTAGGGAGACAATATGCCATACCAGATTCATTCAAAATGAAACATCAGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTGTAGCACAAACACTCGACTGTAAGAGGTAAACTTCGGTGTTAAGGCTTTTTGTACACCAAAGTCTGAATAAAAAAATTTAATTTTCTTTGGTATCTTGAACTTTCATATGTAGTGCACCAAAGGAGTTCTTTGGTGAGATGAAGGAAGACGGATTTCACAGAACAAAAGCCATTTGGATCTAACTTCCGCCAGATTCTGTCTTTGGCCCCTAGATTGCTGGACCTCATCTAGTTTTTCCGAGCAATCGTCCCAGCTAGTCACCTCTGTATTGAACATTCGAACAGACACCAAGAGTTTGTGAAAAGAAATTTTCTTATGTTCAATAAAATTATACCTCTGACCTTTTGGTTACATGAATATATCGAGATGTAAATATGAGATTTCATAAATGGGCATCTATACTATTAAGTTAATGCCACCTCATTTGTAATCCTTGGATAGGCCTATATATTTGTCTTTTTTTAAGACGAACAATTGCAATGATCTATCCCGATCACCCTATATATTTGTTTTTTGAATTCATCTTGTCAGTGGGAGGTTTTAAATATGTTGCTTTTAAATTGTATTTTGTAGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACCGTGAAGCTAATGCAGGTTAGGTATTGTTGTCAGATGTGTACGTTTTGATAAGAATTTTTTGGATAAACGAGAACTATAATTTCTTCCCTGGCTACTTGAAGCACATCTGTAAAGTTGTCAGATGTCTACAGTTTGATAAAAAGCAACATCTGCAAAGTTGTCTCATTCTTTGAGTTGGGGAGATAAGAGTATGTATAATGTGCTTTATTGTTAGGCATCGGCTTTTACAAAGATAAATAAGCATAAATAAAGGAAGTCTTAGAAAAAGCATTGTGTTGTAGATGACCTAAAGATGCGGTTCTCAATATTGCAATATTGCATAGTGTTGTCAACTCCTCTCTACCATTTAAATGCGACCCTGGTCACTATTTTTAAAGGGTGAAAGGCCACAGCTTAGCCATTAAAAGTTCACAATATATAGAAAGTAGTAAAACCGTATATTAAAGTTCCAATATTAAGCATGGAACACTAAGAATAAAGGGTTAAGTATTTGGAACTCCTGTTTGTGGGTGTGTTTTTTTGTATACCCTTGTATATTTCTTCATTTTTCTCAGTGAAAGCTCGGTTTCTTATAAAAAAAAAACAATTATATCAGTCTTGCTAACCATGTTGGGAACATTTTGCTTCAAGTTTGATGCTGAGGAAGGTAGAAATCGATAATATGACCTTTTATCAAGTGAATAGAGAAATTGTATCTAAAAAAGTATCTAAATGCTGCAAGCAACAAACCATGGAAAGCTTAGAAAAAAATAATCAAATTAAACTCGGACTAGGATAACAATTGTTCAAAAAAATGCAACCTATATTATCAAATAAGAGCTTACTTACCTCATAATCCAACTGCTTGATGTCTAGCGTGGCTTCAATGTTTTTTCTTATTAAATTTCTTGAAAGAAAAGCAGAAAGTAATTATTGGTCGTCCAAGTGTATTTAATTATGACTTGGGGTTCTGAAGTTTTCTTATTTTGAATTTCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGGTATGTATTTGATTATTTCGATCTATGTAACTTTTTTCTTTTTGAAGGATCACTTGACATATTGGTTATAAATCCTCTTGATTGTCAATCTATGTAATTTTATTTTAGTAGTAAAATTCAGTATTTGGTTTACACCAGAGTTATTTTTGAATTAATAGCAATAAAATAAAAGAAAGCTAGAGGCATGGAGCTAGGGTGTAGAAAATCACTAGTTCACTTGACACCATAAAAGCGACTATATTACAAAGGCTTAATTGTTTGTTCGTTAATATTTTGTGCAACTTAAGTTCTATGCATGCTGGCTCATAGTTGGTACAAAAGCTTACCTTCGCTGTTGATTTATATTTATTCACTAATAAGGGTTAATGGCAGTTGCTCTTGATTTATTTATTATTATTATTTTTTGTAAAATCTCTTTGTTACCTTTGTTTTCTTCTAAATAGATATGATATATGCATCTAGAGTTTATGTATGGGAATGTCTGGGTGAAAAACCACCCGAAAAACTACCCAGCCATTCCAGGGTGCTGGTATCTCTCCCTTATTTTAGAACCTCAGCAAAATGCTAACTTCCCTACTCCTGTACTCATATTACACGCACAAGATAAATAACTGTCAGACTCAACTTTTCCCATATTACCTCTCCTAAGATATGTTTTCACAATTGGTGGCCTTGCAAAATACTGCGAAGACTTCTCTTTTGGATGCCCTTCGGCTTGAAATACTATAGAATTGCTATTTCAAATACCTTAAGGTTGTACTGTTATTTGTGCTTGCCTGTTTGGTTTGTTCTTTTCTTCCGGTAGGAGTAAACTGATTTACATGTCTAAGATGCCACATTTATCGTTTTGACAGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGGAGTTAAAGTCGGCTCCTAGTACCCCCGAAACCCTAAAATATAAGCTTATGCTGGCTCACGGGAAATTTATAGTTACTCCTATTGAGAATTAGGTATTGTATTAAGTGATATTTTTAATTTTTGAAGTAGTATAGATGTGATAAACAATGTAAAGTAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTGTTAATAGCTTGCACTGCTGCTCGTATTTTCTCTCCAAGTATGTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAATGGAGGGAGTTGACGTGGCGTGCGCTAAATGGTCAATTTTATTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGTAGAGATTTGTTATGTTATGTTAAACTTGAGTTGTATGTTCAGTTCTAGGAATATTGGTTAGGTGATTGGACTTGAAAAAAAATTATAATACTTACAACACAAGTGAAAATTTATATTCGTGAA

mRNA sequence

TGAAGCTTCTCCTCCCCTGAATCCCAAGCAATCTCGCTCACTCTCAGCTCGCTGTACGATTCCCATCGACATCAGTCTCCATCCCTCGTCTCTGAATGCAGAATCGTCACTGGTCGACTCGAGAATCGCTCCTCTCTATTCCGACTTATCGTTCTCCTTCGTCCCTCCCCTATAGCCATTAGCAACAAATATCTACTTTATTCTAGCCCGAGCTACCGTAACTAGGAAGCTGAGGCTTCTTGGTGAACTTTTAGCAGAGGAAAGCGGTGCGACACCATTTTCATATAATAGATTTAAACAGACTGTATCTCTGTAAACGAAGAATTTTGTTGATCCTCATCTTCCAAGATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCGGCACCACCGTCATCGCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAGGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTATTGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTGTAGCACAAACACTCGACTGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACCGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGGAGTTAAAGTCGGCTCCTAGTACCCCCGAAACCCTAAAATATAAGCTTATGCTGGCTCACGGGAAATTTATAGTTACTCCTATTGAGAATTAGGTATTGTATTAAGTGATATTTTTAATTTTTGAAGTAGTATAGATGTGATAAACAATGTAAAGTAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTGTTAATAGCTTGCACTGCTGCTCGTATTTTCTCTCCAAGTATGTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAATGGAGGGAGTTGACGTGGCGTGCGCTAAATGGTCAATTTTATTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGTAGAGATTTGTTATGTTATGTTAAACTTGAGTTGTATGTTCAGTTCTAGGAATATTGGTTAGGTGATTGGACTTGAAAAAAAATTATAATACTTACAACACAAGTGAAAATTTATATTCGTGAA

Coding sequence (CDS)

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCGGCACCACCGTCATCGCTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAGGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTATTGACGGAAAGCAGGAAGGAAAGGAGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTGTAGCACAAACACTCGACTGA

Protein sequence

MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGLLSIKALNEDVIEGLIFIVAQTLD

Homology

[Close]

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-72
Identity = 152/264 (57.58%), Postives = 187/264 (70.83%), Query Frame = 1


Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGPQ----------------QTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 373

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFG 295
           P+ VLYIKNLAKDVV DD YYIFG
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFG 373

[Close]

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot
Match: RBM40_MOUSE (RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-15
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF--- 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  --RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNMSSDESEMESSEEDVEGKYN 148
             R P+    +P   P PP+S    P PP   P P +  ++SS ESE ESS+E+   + N
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMN 258

[Close]

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot
Match: RBM40_BOVIN (RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.4e-15
Identity = 62/142 (43.66%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 10  TPKDHRSKDHTEGMRARP----LHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 69
           T K  RS D  E  + +     L     IA   G+ +P    L+Y YPPP   IL NIVN
Sbjct: 115 TEKKKRSDDPVEDDKEKKELDCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVN 174

Query: 70  ALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 129
           AL +VP+FY QVLHLMNKMN+P PF     R P+    +P   P PP+S    P PP   
Sbjct: 175 ALASVPKFYVQVLHLMNKMNLPTPFGPITTRPPMYEDYMPLHAPLPPTS----PQPPEEP 234

Query: 130 PRP-QITNMSSDESEMESSEED 142
           P P +   +SS ESE ESS+++
Sbjct: 235 PLPDEDEELSSKESEYESSDDE 252

[Close]

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot
Match: RBM40_RAT (RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-14
Identity = 57/125 (45.60%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLP 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  LPTP-----------PLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDV 148
              P           PLPP+ P PP     PPLP       +  ++SS ESE ESS+E+ 
Sbjct: 203 TARPPMYEDYVQLHAPLPPTSPQPPEE---PPLP------DEDEDLSSKESEYESSDEED 258

[Close]

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot
Match: RBM40_HUMAN (RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-13
Identity = 97/335 (28.96%), Postives = 150/335 (44.78%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF--- 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  --RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNMSSDESEMESSEEDVEGKYN 153
             R P+    +P   P PP+S    P PP   P P +   +SS+ESE ES++++   + N
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMN 262

Query: 154 SSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV 213
              + + A    KR +      +      KD+ +  +    S+L P  +P  +  +  PV
Sbjct: 263 K--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPV 322

Query: 214 FQFKIAPKVVIDGKQEGKED--------DINNEVEETEKEAADL--------KSYATLED 273
              +I   +  D     K+D        + N+++  TE +A+++         +    E+
Sbjct: 323 GNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEE 382

Query: 274 L--ERGKLPPEEILSLPMFKNYTAGSPTSVLYI---------------KNLAKDVVNDDL 313
           +  +  ++P E I    + K   +      L +               KNLAK V   DL
Sbjct: 383 IKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDL 442

[Close]

BLAST of Cp4.1LG08g06510 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 3.8e-135
Identity = 261/330 (79.09%), Postives = 280/330 (84.85%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

[Close]

BLAST of Cp4.1LG08g06510 vs. TrEMBL
Match: D7SNK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 5.8e-99
Identity = 206/324 (63.58%), Postives = 240/324 (74.07%), Query Frame = 1


Query: 6   IKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 65
           IKD T     ++D  EG+++  L   EPIAARLG+DYPFPPHLEYAYPPPDGNILTNIVN
Sbjct: 119 IKDFT----MARDLDEGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVN 178

Query: 66  ALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQI 125
           ALIAVPRFY QVLHLMNKMNIPAPFR+ LPTPPLPP VPAPP     PP PPP   RP +
Sbjct: 179 ALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPLPPPVPAPP-----PPPPPPEAARPNL 238

Query: 126 TNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKP 185
            ++SS ESEMESS+E+V+G   S+G  +  + G KR + EAIVGPG+DKDVAHE VGVKP
Sbjct: 239 EDLSSGESEMESSDEEVDGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKP 298

Query: 186 STLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLKSYATLE 245
           +TLVPKEIPMIKKKNPV Q KI PKV+ + K E     I  E E++EKE  DLK YATLE
Sbjct: 299 ATLVPKEIPMIKKKNPVLQIKIVPKVITEHKDECS---IMKESEDSEKEDFDLKPYATLE 358

Query: 246 DLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGL---------- 305
           +L+ GKLPPEEILSLPMFKNYTAG+P  VLYIKNLAKDVV DD Y+IFG           
Sbjct: 359 ELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKS 418

Query: 306 -LSIKALNEDVIEGLIFIVAQTLD 319
            LS+K + E  + G  F+   +++
Sbjct: 419 GLSVKLMQEGRMRGQAFVTFPSVE 430

[Close]

BLAST of Cp4.1LG08g06510 vs. TrEMBL
Match: F6HYT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 4.3e-94
Identity = 200/324 (61.73%), Postives = 236/324 (72.84%), Query Frame = 1


Query: 6   IKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 65
           IKD T     ++D  EG+++  L   EPIAARLG+DYPFPPHLEY +P  DGNILTNIVN
Sbjct: 119 IKDFT----MARDLGEGLKSSSLPASEPIAARLGIDYPFPPHLEYVHP--DGNILTNIVN 178

Query: 66  ALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQI 125
           ALIAVPRFY QVLHLMNKMNIPAPFR+ LPTPP+PP VPAPP+     P PPP   RP +
Sbjct: 179 ALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPIPPPVPAPPT-----PPPPPEAARPNL 238

Query: 126 TNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKP 185
            ++SS ESEMESS+E+V+GK  S G  +  + G KR + EAI GPG+DKDVAHE VGVKP
Sbjct: 239 EDLSSGESEMESSDEEVDGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKP 298

Query: 186 STLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLKSYATLE 245
           +TLVPKEIPMIKKKNPV Q KIAPKV+ + K E     I  E E++EKE  DLK YATLE
Sbjct: 299 ATLVPKEIPMIKKKNPVLQIKIAPKVITEHKDECS---IMKESEDSEKEDFDLKHYATLE 358

Query: 246 DLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGL---------- 305
           +L+ GKLPPEEILSLPMFKNY AG+P  VLYIKNLAKDVV DD Y+IFG           
Sbjct: 359 ELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKS 418

Query: 306 -LSIKALNEDVIEGLIFIVAQTLD 319
            LS+K + E  + G  F+   +++
Sbjct: 419 GLSVKLMQEGRMRGQAFVTFPSVE 428

[Close]

BLAST of Cp4.1LG08g06510 vs. TrEMBL
Match: A0A059DGY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 6.8e-92
Identity = 187/298 (62.75%), Postives = 225/298 (75.50%), Query Frame = 1


Query: 32  EPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 91
           EPIA +LGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR
Sbjct: 158 EPIAPKLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 217

Query: 92  LPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGV 151
           + LPTPPLPPS   PP     PP PPP T +P + ++SS+ESE ESSEE+V+ K  S G 
Sbjct: 218 MALPTPPLPPSAAVPPPPP--PPPPPPITAKPLVADLSSEESEFESSEEEVDDKAQSLGF 277

Query: 152 SKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV 211
           S+  +S  KR+R EAIVGP IDKDVAHE+VG+KP+TLVPKEIP+IKKKNPV Q KI PK 
Sbjct: 278 SRV-KSSKKRARREAIVGPAIDKDVAHESVGLKPATLVPKEIPLIKKKNPVLQIKIIPKP 337

Query: 212 VIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSP 271
            +    E K+D   N++EE ++E  + K +AT E+LERG+LPPEEILSLPMFKNYT G+P
Sbjct: 338 KVSAVDEHKDDSTANDIEEPDQEKLEKKQFATPEELERGRLPPEEILSLPMFKNYTPGNP 397

Query: 272 TSVLYIKNLAKDVVNDDLYYIFG-----------LLSIKALNEDVIEGLIFIVAQTLD 319
             VLYIKNLAKDV+ DD ++IFG            L++K + E  + G  F+   +++
Sbjct: 398 APVLYIKNLAKDVIVDDFHFIFGSLFGSADDAKSTLNVKLMQEGRMRGQAFVTFPSIE 452

[Close]

BLAST of Cp4.1LG08g06510 vs. TrEMBL
Match: M5W4H5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.5e-91
Identity = 192/298 (64.43%), Postives = 225/298 (75.50%), Query Frame = 1


Query: 32  EPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 91
           EPIA RLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR
Sbjct: 140 EPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 199

Query: 92  LPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGV 151
           + LP+PPLPPSVP P      PP PPP   +P   ++SS+ESEMESS+E+++GK  SSG 
Sbjct: 200 MALPSPPLPPSVPVP------PPPPPPLAAKPPSADLSSEESEMESSDEEIDGK-PSSGT 259

Query: 152 SKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV 211
           S+    G KR + EAIVGP +DKDVAHE VG+KP+ LVPKE PMIKKKNP+ Q KIAPKV
Sbjct: 260 SR----GQKRVKREAIVGPAVDKDVAHEDVGLKPAILVPKERPMIKKKNPIVQIKIAPKV 319

Query: 212 VIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSP 271
           V     E K+D I  + E  + E++D+ S+AT E+LERGKLPPEEILSLPMFKNY AG+P
Sbjct: 320 V---NNEHKDDSITKDSEHPKNESSDINSFATPEELERGKLPPEEILSLPMFKNYAAGNP 379

Query: 272 TSVLYIKNLAKDVVNDDLYYIFGL-----------LSIKALNEDVIEGLIFIVAQTLD 319
            SVLYIKNLAKD+V DD YYIFG            LS+K + E  + G  F+   +++
Sbjct: 380 ASVLYIKNLAKDIVADDFYYIFGSLFGSVDAAKSGLSLKLMQEGRMRGQAFVTFPSVE 423

[Close]

BLAST of Cp4.1LG08g06510 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 273.9 bits (699), Expect = 1.3e-73
Identity = 152/264 (57.58%), Postives = 187/264 (70.83%), Query Frame = 1


Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGPQ----------------QTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 373

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFG 295
           P+ VLYIKNLAKDVV DD YYIFG
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFG 373

[Close]

BLAST of Cp4.1LG08g06510 vs. NCBI nr
Match: gi|659094661|ref|XP_008448178.1| (PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo])

HSP 1 Score: 490.0 bits (1260), Expect = 3.2e-135
Identity = 263/330 (79.70%), Postives = 279/330 (84.55%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIK    KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPA
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK D  NN+ E  EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVDKTNNDGEGAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

[Close]

BLAST of Cp4.1LG08g06510 vs. NCBI nr
Match: gi|659094651|ref|XP_008448172.1| (PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo])

HSP 1 Score: 490.0 bits (1260), Expect = 3.2e-135
Identity = 263/330 (79.70%), Postives = 279/330 (84.55%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIK    KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPA
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK D  NN+ E  EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVDKTNNDGEGAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

[Close]

BLAST of Cp4.1LG08g06510 vs. NCBI nr
Match: gi|449444421|ref|XP_004139973.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 5.5e-135
Identity = 261/330 (79.09%), Postives = 280/330 (84.85%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

[Close]

BLAST of Cp4.1LG08g06510 vs. NCBI nr
Match: gi|778712593|ref|XP_011656912.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 5.5e-135
Identity = 261/330 (79.09%), Postives = 280/330 (84.85%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

[Close]

BLAST of Cp4.1LG08g06510 vs. NCBI nr
Match: gi|700191445|gb|KGN46649.1| (hypothetical protein Csa_6G118290 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 5.5e-135
Identity = 261/330 (79.09%), Postives = 280/330 (84.85%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+ D    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFG----- 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFG     
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 ------LLSIKALNEDVIEGLIFIVAQTLD 319
                  L++K + E  + G  F+   +++
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIE 326

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1165_ARATH	2.3e-72	57.58	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G...	[more]
RBM40_MOUSE	5.7e-15	47.50	RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2	[more]
RBM40_BOVIN	7.4e-15	43.66	RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1	[more]
RBM40_RAT	1.3e-14	45.60	RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=1 SV=2	[more]
RBM40_HUMAN	5.3e-13	28.96	RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1	[more]

BLAST of Cp4.1LG08g06510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCT1_CUCSA	3.8e-135	79.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1	[more]
D7SNK2_VITVI	5.8e-99	63.58	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=...	[more]
F6HYT0_VITVI	4.3e-94	61.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=...	[more]
A0A059DGY1_EUCGR	6.8e-92	62.75	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1	[more]
M5W4H5_PRUPE	1.5e-91	64.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g06510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09230.1	1.3e-73	57.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG08g06510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094661\|ref\|XP_008448178.1\|	3.2e-135	79.70	PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo]	[more]
gi\|659094651\|ref\|XP_008448172.1\|	3.2e-135	79.70	PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo]	[more]
gi\|449444421\|ref\|XP_004139973.1\|	5.5e-135	79.09	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cu...	[more]
gi\|778712593\|ref\|XP_011656912.1\|	5.5e-135	79.09	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cu...	[more]
gi\|700191445\|gb\|KGN46649.1\|	5.5e-135	79.09	hypothetical protein Csa_6G118290 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06510.1	Cp4.1LG08g06510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 221..241 scor
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 1..294 score: 9.5E
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING PROTEIN 40	coord: 1..294 score: 9.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g06510	CmaCh06G017430	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g06510	CmoCh06G017300	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g06510	Carg23330	Silver-seed gourd	carcpeB0389

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g06510	Cucumber (Chinese Long) v3	cpecucB1061
Cp4.1LG08g06510	Wax gourd	cpewgoB1077
Cp4.1LG08g06510	Cucurbita pepo (Zucchini)	cpecpeB490
Cp4.1LG08g06510	Cucumber (Gy14) v1	cgycpeB0902
Cp4.1LG08g06510	Cucurbita maxima (Rimu)	cmacpeB293
Cp4.1LG08g06510	Wild cucumber (PI 183967)	cpecpiB867
Cp4.1LG08g06510	Cucumber (Chinese Long) v2	cpecuB865
Cp4.1LG08g06510	Bottle gourd (USVL1VR-Ls)	cpelsiB709
Cp4.1LG08g06510	Watermelon (Charleston Gray)	cpewcgB769
Cp4.1LG08g06510	Watermelon (97103) v1	cpewmB831
Cp4.1LG08g06510	Melon (DHL92) v3.5.1	cpemeB798
Cp4.1LG08g06510	Cucumber (Gy14) v2	cgybcpeB458
Cp4.1LG08g06510	Melon (DHL92) v3.6.1	cpemedB939