CmoCh06G017300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding 40
Location	Cmo_Chr06 : 11864477 .. 11874321 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTACGGTGCTCTTACCACTATTTATTGTTTTCATCTTACATTATAATTTGTAATGTATTGTTATGTATGCTAGGTCTACAAATTCTTTAAGATTGATAGTTGAAATTGATGATTCTTTAATGTTTCATTTTCTTGAAAACGCAAGGTGTTCTGTAAGTTCTAAACTGTCGAACTTTTGTATTAAAGTTTTGAGCATCTACACAATTCGACATACTCTAGTTTAAACGAGCCTCACAAAAGGTACTGAATCAACATTATAGGAGTACTAAATCAACATTTAATGAGAATGACATAGATCAGTTCTGTAAGTCGTTGGTCCAAAAACAGTGATATAGTTCTTCTCTTTAGTGATGTAATTTAGACAATTCTGTGGCACTAGCCTATATGTCTATAAAAGATTTGTCTAAATCAAATGTGGAGAAAATGAAACTCTTTGCGATTATGTGGATGATGTTCTTGAATACTTGCCCACAAAAATAGGTTAATCAGACAATTCCAACAATCCAAAGAGAAAATATATACAATCCTTAAACGGAAAAGGTACGGATATTCTTTGGATACCTTCTGCACTGCATCACCTGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTACGTTCTTGATTTTCCACTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACCAAGTTTCTATGGAGACAATTGTATTTGGTTGTACATTTGTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTTGTTGTTTACAAATGAAATGATAATTTATATGTTTTAAAGAGAAATTTAAAACTTATATGCTTAAAGTGAAGTTCAATTTTGAATGTTGCCTCTCGTGACCTCCTGAGGTTTTTTTGGTGACTTTTCTCAGTAGTTGTTGCTAGTGCTCCTTGCTCATGATGGTTGCTGGTCTTGTTCCTAGAAAAATAGAAACAAAACCTTCTCTTATGGTTTTGGTCCAAGGAAGAAAGGTAGACAATGTAGGATTAAGGAATCTCATTTAAAATAAAAGGTTTAAGTTAGTTCTTGAGGAAGTTACGATTGTTTGGCTAACTAACTCCCTTGAGTATCTGCTGCTGCTTGCCCTGCACTCTCCAAAGTTCTATTGAAAGGTTGACTGTTGTGATGGGTTTATTTGGACTCAAAAGATTACAAACAAAAGAGGCTCCTTTCTTGAGATCATCAAGGTTTATAGATTGGGAGGTAAGAGAAATCTTGTTGTTCCTTCTAATAGAGATTAGATGGTTGGAAGTCCTTCCAGGAACTTCTTATAGAGTTTTTGGATGAAACATGAAAACCAAATGAGAAGCCAAAGAAACTCCAGAATAGAACCCTCATGGAAGGGAAGTGCGAAGGCTCCTCCTTTGAAGAGGTGTTGAAAAATGAACCAATGAATCTTGTTGTTCCTTCTGATAGAGATTAGATGGTTGGAAGTCCTTCAAGGAACTTCTTATAGAGATTTTGAATGAAACATGAAAACCAAATTAGAAGCCAAAGAAGCTCTCAAATAAAACCCTCATGGAAGGGAAGTGTGAAGGCTCCTCCTTTGCAGAAGTGTTGAAAAATAAACCAATAAGGAGAAAAAGATTCCTCAAGTATGTTAGAGGAGGAGGGTTTTAGTCTTGTAGAAGCGGATAAGAAGGAATTTACATTTTTTAAATGGGTTAAACCGTTGGTTATTACCAGAAGAGACTTCCACGATGATTGGGCAAAATTTTTGGAAACCCTTGACAAGCAGCCGGAGGAATCTTTCACTGTTAATCTTTTCTTCCCTGATAAAGCCCTTTTGTTGTGCCCCTTGACAAAGTGTACAAGGCTACTAGCTACGATTGTAAGGGGGGTTACATTAGGAGCCTTTACAATGAAGTTAGAAAGACGGGTCCCTTGGGAGAACGAGAGAACTACAAGGGTCCCCTCTTACAGGGGTTGGATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCTTGCATTTATGGAGCCTAGCCACATTCAAGGCGATAATTGATTGCTTTGAGGGGATTTTGTGGACTATGCAAATCAAAGCTCTTCCCTCATTGAATGCTTAGAAGTTGCAATTGAAGTGCAAGGAATTACTGTGGATTCATCCCCCAATGAAGTGAAAATCCTTGATAGAGAACAAGTGTCTTCCTCCCAGATGATTGTGCTCCAAGATGGCTGGTTGTTGGCCTAAAAGAAAGTTGAGTTCACAGTGGACTTTAGTCTGAAGCAGCCACAAGGTTCCATGACAATGACATGAGATCCGGTTCTAATCTGATAGATTTGTGGAGGTTAAGGGACAGTTTTTTTTTTTTTACTCATCAGTAACTAGTTTTTACCCGAATATTCCAATGTTGCAGGGAGAGGTTTCAGTCTTCTACCTAAATTTGAATCACATGTTTGAGAAGACTGACGGTGGACCCCACACGGTTGATCGTAGCCTTCGCTCAAGCTCCACACGAATACAGACTCCCCTGTCAAGTCAAAGTAACAGTGGTCCTTTGCATCAGGGAGACATTCCAAATTTCCCTCTAATTTCAGGAGGAAAGGGAAAATTAGTCAAATTTGTGGAAGATTTAGAGAAGGGTCGTGGAAAAGTCTTTTTTTTTTACAAGGGGAAAATTTTCTCTACAAGCAATACCAAGGCTAAGCTTTGCAATAAAAATTTGATGATGAAAAAGATGTGGTAAAGGAAAACGAAAGAGGGGTAGAGGATTATGTAGAGATCCTTGAGAATTTTCAGCTTTGTTTTCAAGAAAATGAAGCTTTCCCTTTATCTTTAGAAGTGGATACAACCCTGGCTATTGAGAAAAGAAAAGATGGGAATGATGGTACTATAATGAAAGTAGATCACGTAGAGGAAACTCAAGAGGAGAGGAAAAGGAAAAAAGTCAAAAGGGTTGGTGGAGTTATGTTCCTTCACCGTTTAGCAGAAGTCTGGTTAAAGCTTTGAAAAGATGGAAATTGTGTATATTCCTAGAAGAGGCAATCCAATGGGCAAGAAGAACGTTAGATAGTTGAATGGCATTTTGAGAACTTGGGAGAACGAACCAGAGGAAGTAGATGAAGGGGTTTGTCTCACGAAGATAGTCTTATGGAACGTTAGAGGCCTTGGTGCTCTCTCCAAAAAGTGCTTGTTAAGGAGTTTTTAGTTAAAATTAGTCTGGATGTTGTGGTTCAATTTGGTTGAATGTTACTTGATGTTTCTTATTAAAAAAAAAAAAAAAAACTTATATGTTTAACCTATGGAAGCACATTTGAAGTAAATACTCACAACTTCTTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGATTGATAAATGTAGGTTGCGCATATTTGGTTCACTTTAAGTACATAGATGCATTTGTGCACTCATGGTTTGTTGGTGGAATGCGGTTATTTTGAAGATTTTGGAGGATGCTGGGCAGTGTATTTAGATACTTACCTCTTTGTTGCTTTGAATTTTATTTTCCTTGGTACACCACACAATTTACTTTATGAAAAGATTGAATAGAAAGGCATTTTCCGTGAAAACTTAAGCAGTGATATAGGAGTAATTTTTTTGTTTTTTCCCTGATTAAGTATAATCTGCAGAAAACTCTCACCTTGTTGAGCAAGATAATCTAATGTAAGGATAGCATGGTTAAATGAAAGGTTTGGCACCAGACTCTTAGTATGAAGGCTAACTACCATTAAAGGTCCAAATTTAGCATCTTCCCTATTCTCTCAAGTGCTAAATTCGTGAGCAGCTCGCTAGGGATGGCCATTCCTCCATAACAGCATCAGAAAAGTTTCTCCCATATTTGTGATTCCATCCTCTCAAAGGATTTGTCCAACATTGACAAATAAGGGAGCCCTTGGCGTTTGCAATGCTAAAGACAGTTGAAAAGGCCAAGTGGGGAGGAGCATTGATAAGCCAGGGATCCTCCCAAAATAGAAATTTATCTCCATTACCTACAGCCACCTCTTAACACGTATTGGCCAAGTTACAATAAGAAGTAGAGACCTAGGGACTGAAGTTGAATGGACATTTAGAAGAAGGGTTCCATTCTTCAAATGAGAGTGGTGAGACTGGTATTTTGTTGAAGTTGTTACCTATAATCTTTAGTTGCATCCCGTTTATTTTTTTTCTTTTTGGTAAAAATACTTTCCTTTGTCCTTGTCTTCTTAGTTCTCCTGTATTGTTTGATTTTTATTCTATTCATTTTTTTACTACTTTAAGAAGGTATCTTTCCTTATTTTATGAGGCCTGATATAATAATCTACTCCCTTTTGTCTTGGCTTACTGATTAATTGGATATAAATGTGCATTAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGGTTGCTTTTATCATTAGATATGGCTAAGTGGCATATGCTTTATTTATATGATTCATCAAATTCACTTGTTTAGTTGTTGCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACAGAAAGCAGGAAGGAAAGGAGGACGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGGTACTTTACCATGTGATATTTTAATGCTCAAGTATGAAACTACTGCATGTTATTCGTACATTCATTTATTTAAGCTCCATTTCTTGTATATGTTTTAACAAATTATTTAGTGAGGGAAAAAAAGTGCTTTGAAGATGGTTAAACATTTTTCTTAAATAAAAACTTACCACATATGCTTATAAAAAAGGCTTACTGCATAAGAAATTTGACCATGATTTGGTTCCTATTGGTTTGAAATTCAGAATTTCGACAAAGGTAGTTCTAAGACGTTTTGCTTTTGTTTTCTTGGACAATCATGGGCATCTTGTTCCTTGGGGTGTGCAACCTTATTTTCTTGTGAAATATTTGGCTGGAGAGAGATAGGAGGATTTTTAGAAGGGTTGTGTGTCAGTAGAGACTAGAGAGGTATGGTCCACGATTAGATTTAATGACTCTCTTTGGGTGTCAATGACCAAATGGGTTTGGTATTGCTCTTTTGTCTCTTGTTAGCAAAGTTGTGAATTTCTAGATGCGGATATTTTAAGTTTCTGCTTTGTTGACAGCATTTTGGATATCGATGTTCCCTCTTTTGTTGATGCTTGTTGGGTTGGCCAGTGGTCAATAAAGGTTATGAGAATAATTAAGGGTTTAGAGGGAAGGAGTTCAATAAATTTTCTTTTCTTTGTTTTAATAAATTTTTCTTTCATTTCCCTGGTTTAGGGTTGGGTATATATAAGCTACCTTTTCTTTTAATTTACCATTTGAGTATGATATAAAAATAATGTTGGAAATTTCATGGATATTGCAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGTTAGTTTCTTTGCCCCAATTCAGCCTGTGTGCATATATGGAAACACACGGCACTATTTTTTCACTATTTGTTATTTTTGTTATTTTTTCATGAACTGATTGATATTAAGGAATCTTGGGTAGGGGTTCAAATATGAAGCAAAGTCGTGAGATGGCAAGAGGATTGGGGGAATTTGGGATGTACTCCGTGTGAATAATTTTTGACGTATTTATGGATGAAAACTCCCCCTTTGACCTCTTACTGTGATGCCCCTTGAAACGGGTGATGTATTATGACAATAAAAGGCAAACAAGCTAAGGGCTAGGGGTTGAGAATACCCCTGCCCAAAATCCTACAAAAGCGCCTTTCCATTGTTAATAATCACGAGGTTGTGATTACAAAAGTACTTCTTGTGGTTTGAGCAGACCAAGAGATTTTATGCTGCATAGAATTATAAAAATAATCCACCAGAGTCGACTTGTCTTTGGAAATTCTTTGTGTCACTCTTTCCAAATAAGTCAAAGGCCTTTTAAGAAGTTATGTTAAAAGTTTTCTAGAAGCCAAGAATCGACACAATCAGGGAGACAATATGCCATACCAGATTCATTCAAAATGAAACATCAGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTATAGCACAAACACTCGACTGTAAGAGGTAAACTTTAGTGTTAAGGCTTTTTGTACACCGAAGTCTGAATAAAAAAATTTAATTTTCTTTGGTATCTTGAACTTTCATATGTAGTTCACCAAAGGAGTTCTTTGGTGAGATGAAGGAAGATGGATTTCACATAACAAAAGCCATTTGGATCTAACTTCCGCCAGATTCTGTCTTTGGCCCCTAGATAGCTGGACCTCATCTAGTTTTTCCGAAAAATCGTCCCAGCTAGCCACCCCTGTATTGAACATTCGAACAGACACCAAGAGTTTGTGAAAAGAAGTTTTCTTATGTTCGATAAAATTATGCCTCTGACCTTTTGGTTACATGAATATATCGAGATGTAAATCTGAGATTTCATAAATGGGCATCTATACTATTATGTTACTGCCACCTCATTTGTAATCCTTGGATAGGCCTATATATTTGTCTTTTTTAAGACAACAATTGCAATGATCTATCCCGATCACCCTATATATTTGTTTTTTGAATTCATCTTTTCAATGGGAGGTTTTAAATATGTTGCTTTTAAATTGTATTTTGTAGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGTTAGATATTGTTGTCAGATGCGTACGTTTAGATAAGAATTTTTTGGATAACCGAGAACTATAATTTCTTCCCTGATTACTTGAAGCACATCTGTAAAGTTGTCAGATGTCTACAGTTTGATAAAAAGCAACATCTGCAAAGTTGTCTCATTCTCTGAGTTGGGGAGATAAGAGTATGTATAATGTGCTTTATTGTTAGGCATCGGCTTTTACAAAGATAAATAAGCATAAATAAAGCAAGTCTTAGAAAAAGCAGTGTGTTGTAGATGACCTAAAGATGCGGTTCTCAATATTGCAATAATGCATAGTGTTGTCAACTCCTCTCTACCATTTAAATGCGACCCTGGTCACTATTTTTAAAGGGTGAAAGGCCACAGCTTAGCCATTAAAAGTTCACAATATATAGAAAGTAGTAAAACCATATATTAAAGTTCCAATATTAAGCATGGAACACTAAGAATAAAGGGTTAAGTATTTGAAGACGACAAATCTTATCAATCTCTTGGATTGGATCCCTTTTGTAGCTAGTGTTCGGACTCCTGTTTGTGGGTGTGTTTTTTTGTATAGCCTTGTATATTTCTTCATTTTTCTCAGTGAAAGCTCGGTTTCTTATAAAAAAAACAATTATATCAGTCTTGCTAACCATGTTGGGAACATTTCTCTTCAAGTTTGATGCTGTGGAAGGTAGAAATCGATTATAATATGACCTTTTATCAAGTGAATAGAGAAATTGTATCTAAAAAAAGTATCTAAATGCTGCAAGCAACAAACCACGGAAAGCTTAGAAAAAAATAATCAGATTAAACTCGGACTAGGATAACAATTGTTCAAAAGAATACAACCTATATTATCAAATAAGAGCTTACTTACCTCATAATCCAACTACTTGGATGTCTAGCGTGGCTTCAATGTTTTTTCTTATTAAATTTCTTGAAAGAAAAGCAGAAAGTAATTATTGGCCGTCCAAGTGTATTTAATTATGACTTGGGGTTCTGAAGTTTCCTTATTTTGAATTTCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACAGGCTTTGGTTAGTAGTAAAATTCAGTATTTGGTTTACACCAGGGTTATTTTTGAATTAATAGCAATAAGATAAAAGAACGCTAGAGGCATGGAGCTATGGTGTAGAAAATCACTAGTTCACTTGACACCATAAAAGCGACTCTGTTACAAAGGCTTAATTGTTTGTTCGTTAATATTTTGTGCAACTTAAGTTATATGCTTGCTGGCTCATAGTTGGTACAAAAGCTTACCTTCGCTGGTGATTTATATTTATTCACTAGGAAGGGTTAATGGCAGTTGCTCTTTATTTATTTATTATTATAATTTTTTGTAAAATCTCTTTGTTACCTTTGTTTTCTTCCGCATAAATATGATATATGCATCTAGAGTTGATGTATGGGAATGTCTGGGTGAAAAACCACCCGAAAAACTACCCAGCCATTCCAGGGGGCTGGTTTCTCTCCCTTATTTTAAAACCTCAGCAAAATGCTAACTTCCCTACTCCTGTACTCATATTACACGCACAAGATAAATAACTGTCAGTCTCAACTTTTCCCATATTACCTCTCGTAAGATACGTTTTCACAATTGGTGGCCTTGCAAAATACTGCTAAGACTTCTATTTTGGATGCCCTTCGGCTTGAAATACTATAGAATTGTTATTTCAAATACCTGAAGGTTGTAGTGTTATTTGTGGTTGCCTGTTTGGTTTGTTCTATTCTTCCTGTAGGAGTAAACTGATTTACATGTCTAAGATGCCACATTTATCGTTTTGACAGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAGTCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAGTACCCCCTGAAACCCTAAAATATAAGCTTATGCTGGCTCACGGGAAATTTACAGTTACTCCTATTGAGAATTAGGTATTGTATGAAGTGATATATTTTTAATTTTTAAAGTAATATAGATGTGATAAACAATGTAAAGCAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTATTAATAGCTTGCACTGCTGCTCGTTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAATGGAGGGAGTTGACGTTGCGTGTGCTAAATGGTCAATTTTTTTTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGTAGGGATTTGTTATGTTAAACTGAGTCAAGGATTTGAGTTGTATGTTCAGTTGTTCAGTTCTAGGAATATTTGTTAGGTGATTGGAGTTGAAAAAAATTATAATACTTACAACACAAGTGAAAAATTATATTCGTGAATTTTTTTTAATCAATTCAATCTATCGTTTTTTGAGCG

mRNA sequence

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACAGAAAGCAGGAAGGAAAGGAGGACGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACAGGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAGTCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAGTACCCCCTGAAACCCTAAAATATAAGCTTATGCTGGCTCACGGGAAATTTACAGTTACTCCTATTGAGAATTAGGTATTGTATGAAGTGATATATTTTTAATTTTTAAAGTAATATAGATGTGATAAACAATGTAAAGCAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTATTAATAGCTTGCACTGCTGCTCGTTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAATGGAGGGAGTTGACGTTGCGTGTGCTAAATGGTCAATTTTTTTTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGTAGGGATTTGTTATGTTAAACTGAGTCAAGGATTTGAGTTGTATGTTCAGTTGTTCAGTTCTAGGAATATTTGTTAGGTGATTGGAGTTGAAAAAAATTATAATACTTACAACACAAGTGAAAAATTATATTCGTGAATTTTTTTTAATCAATTCAATCTATCGTTTTTTGAGCG

Coding sequence (CDS)

ATGGATGATGCTGCCATCAAAGATTGCACGCCTAAGGACCACAGGAGTAAAGATCATACTGAGGGTATGAGAGCAAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTGGAGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACAGAAAGCAGGAAGGAAAGGAGGACGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACAGGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAGTCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG

Homology

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BLAST of CmoCh06G017300 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 3.2e-102
Identity = 202/330 (61.21%), Postives = 245/330 (74.24%), Query Frame = 1


Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGPQ----------------QTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 378

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVEL 330
           P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEV 438

Query: 331 AQQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
           A +ALNLVNG+VFKGKPMIIQFGR+PGAAK
Sbjct: 439 AHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]

BLAST of CmoCh06G017300 vs. Swiss-Prot
Match: RBM40_PONAB (RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-30
Identity = 124/377 (32.89%), Postives = 187/377 (49.60%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF--- 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  --RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNMSSDESEMESSEEDVEGKYN 153
             R P+    +P   P PP+S    P PP   P P +   +SS+ESE ES++++   + N
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPEEDEELSSEESEYESTDDEDRQRMN 262

Query: 154 SSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV 213
              + + A    KR +      +      KD+ +  +    S+L P  +P  +  +  PV
Sbjct: 263 K--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPV 322

Query: 214 ----FQFKIAPKV----VHDRKQEGKEDDINNEVEETEKEAADL--------KSYATLED 273
                +F I+  +      D ++E   ++ N+++  TE +A+++         +    E+
Sbjct: 323 GNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEE 382

Query: 274 L--ERGKLPPEEILSLPMFKNYTAGSPTSVL---------------YIKNLAKDVVNDDL 333
           +  +  ++P E I    + K   +      L               Y+KNLAK V   DL
Sbjct: 383 IKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDL 442

Query: 334 YYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPM 366
            YIFG       E +  +  ++LM+EGRM+GQAFV LP+ + A +AL   NGYV  GKPM
Sbjct: 443 KYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPM 502

[Close]

BLAST of CmoCh06G017300 vs. Swiss-Prot
Match: RBM40_HUMAN (RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.2e-30
Identity = 123/377 (32.63%), Postives = 187/377 (49.60%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF--- 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  --RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNMSSDESEMESSEEDVEGKYN 153
             R P+    +P   P PP+S    P PP   P P +   +SS+ESE ES++++   + N
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDEELSSEESEYESTDDEDRQRMN 262

Query: 154 SSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGVKPSTLVPKEIP--MIKKKNPV 213
              + + A    KR +      +      KD+ +  +    S+L P  +P  +  +  PV
Sbjct: 263 K--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPVLLPSDVFDQPQPV 322

Query: 214 ----FQFKIAPKV----VHDRKQEGKEDDINNEVEETEKEAADL--------KSYATLED 273
                +F I+  +      D ++E   ++ N+++  TE +A+++         +    E+
Sbjct: 323 GNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFGKIFPKPNLDITEE 382

Query: 274 L--ERGKLPPEEILSLPMFKNYTAGSPTSVL---------------YIKNLAKDVVNDDL 333
           +  +  ++P E I    + K   +      L               Y+KNLAK V   DL
Sbjct: 383 IKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDL 442

Query: 334 YYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPM 366
            YIFG       E +  +  ++LM+EGRM+GQAF+ LP+ + A +AL   NGYV  GKPM
Sbjct: 443 KYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 502

[Close]

BLAST of CmoCh06G017300 vs. Swiss-Prot
Match: RBM40_BOVIN (RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-28
Identity = 132/406 (32.51%), Postives = 193/406 (47.54%), Query Frame = 1


Query: 10  TPKDHRSKDHTEGMRARP----LHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 69
           T K  RS D  E  + +     L     IA   G+ +P    L+Y YPPP   IL NIVN
Sbjct: 115 TEKKKRSDDPVEDDKEKKELDCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVN 174

Query: 70  ALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPAT 129
           AL +VP+FY QVLHLMNKMN+P PF     R P+    +P   P PP+S    P PP   
Sbjct: 175 ALASVPKFYVQVLHLMNKMNLPTPFGPITTRPPMYEDYMPLHAPLPPTS----PQPPEEP 234

Query: 130 PRP-QITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 189
           P P +   +SS ESE ESS++  E +   + + + A    KR +   I    + K    +
Sbjct: 235 PLPDEDEELSSKESEYESSDD--EDRQRMTKLMELANLQPKRPK--PIKQRHVRKKRKIK 294

Query: 190 TVGVKPS----TLVPKEIP--MIKKKNPVFQFKIAPKVVHDRKQEGKED--------DIN 249
            +   PS    +L P  +P  +  +  PV   KI   +  D +   K+D        + N
Sbjct: 295 DMLNIPSSASHSLHPVLLPSDVFDQPQPVGNKKIEFHISTDMQVAFKKDLEKQQNCEEEN 354

Query: 250 NEVEETEKEAADL--------KSYATLEDL--ERGKLPPEEILSLPMFKNYTAGSPTSVL 309
           +++  TE +A+++         +    E++  +  ++P E I    + K   +      L
Sbjct: 355 SDLPATEADASNIGFGKIFPQPNLNITEEIKDDSDEMPSECISRRELEKGRISREEMETL 414

Query: 310 ---------------YIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRG 366
                          Y+KNLAK V   DL +IFG       E +  +  ++LM+EGRM+G
Sbjct: 415 SVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKG 474

[Close]

BLAST of CmoCh06G017300 vs. Swiss-Prot
Match: RBM40_MOUSE (RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 6.7e-28
Identity = 124/377 (32.89%), Postives = 175/377 (46.42%), Query Frame = 1


Query: 34  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF--- 93
           IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF   
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPI 202

Query: 94  --RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNMSSDESEMESSEEDVEGKYN 153
             R P+    +P   P PP+S    P PP   P P +  ++SS ESE ESS+E+   + N
Sbjct: 203 TARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMN 262

Query: 154 --------SSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGV-KPSTLVPKEIPMIKK 213
                        KT +  + R + +      I    +H    V  PS +  +   +  K
Sbjct: 263 RLMELANLQPKRPKTEKPRHVRKKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNK 322

Query: 214 KNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYA-------------TLE 273
           K    +F I+  +     ++  E   NNE E ++     L S               T E
Sbjct: 323 K---IEFNISTNMPAAFNKD-LETQPNNEEENSDSPDTGLDSNTGFGKIFPKPNLNITEE 382

Query: 274 DLERGKLPPEEILS-------------LPMFKNYTAGSPTSV---LYIKNLAKDVVNDDL 333
             E     P + +S             +     + +  P      +Y+KNLA+ V   DL
Sbjct: 383 ITEDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDL 442

Query: 334 YYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPM 366
            +IFG       E +  +  ++LM+EGRM+GQAFV LP+ + A +AL   NGYV  GKPM
Sbjct: 443 KFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPM 502

[Close]

BLAST of CmoCh06G017300 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 7.0e-157
Identity = 294/336 (87.50%), Postives = 307/336 (91.37%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQAL 336
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ+AL
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQRAL 332

[Close]

BLAST of CmoCh06G017300 vs. TrEMBL
Match: D7SNK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.7e-131
Identity = 256/355 (72.11%), Postives = 286/355 (80.56%), Query Frame = 1


Query: 6   IKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 65
           IKD T     ++D  EG+++  L   EPIAARLG+DYPFPPHLEYAYPPPDGNILTNIVN
Sbjct: 119 IKDFT----MARDLDEGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVN 178

Query: 66  ALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQI 125
           ALIAVPRFY QVLHLMNKMNIPAPFR+ LPTPPLPP VPAPP     PP PPP   RP +
Sbjct: 179 ALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPLPPPVPAPP-----PPPPPPEAARPNL 238

Query: 126 TNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKP 185
            ++SS ESEMESS+E+V+G   S+G  +  + G KR + EAIVGPG+DKDVAHE VGVKP
Sbjct: 239 EDLSSGESEMESSDEEVDGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKP 298

Query: 186 STLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLE 245
           +TLVPKEIPMIKKKNPV Q KI PKV+ + K E     I  E E++EKE  DLK YATLE
Sbjct: 299 ATLVPKEIPMIKKKNPVLQIKIVPKVITEHKDECS---IMKESEDSEKEDFDLKPYATLE 358

Query: 246 DLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKS 305
           +L+ GKLPPEEILSLPMFKNYTAG+P  VLYIKNLAKDVV DD Y+IFGSLFG +D AKS
Sbjct: 359 ELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKS 418

Query: 306 ALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
            L+VKLMQEGRMRGQAFVT PSVELA  ALNLVNGYVFKGKPMIIQFGR+P AAK
Sbjct: 419 GLSVKLMQEGRMRGQAFVTFPSVELAHHALNLVNGYVFKGKPMIIQFGRNPAAAK 461

[Close]

BLAST of CmoCh06G017300 vs. TrEMBL
Match: F6HYT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.9e-126
Identity = 249/355 (70.14%), Postives = 282/355 (79.44%), Query Frame = 1


Query: 6   IKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVN 65
           IKD T     ++D  EG+++  L   EPIAARLG+DYPFPPHLEY +P  DGNILTNIVN
Sbjct: 119 IKDFT----MARDLGEGLKSSSLPASEPIAARLGIDYPFPPHLEYVHP--DGNILTNIVN 178

Query: 66  ALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQI 125
           ALIAVPRFY QVLHLMNKMNIPAPFR+ LPTPP+PP VPAPP+     P PPP   RP +
Sbjct: 179 ALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPIPPPVPAPPT-----PPPPPEAARPNL 238

Query: 126 TNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKP 185
            ++SS ESEMESS+E+V+GK  S G  +  + G KR + EAI GPG+DKDVAHE VGVKP
Sbjct: 239 EDLSSGESEMESSDEEVDGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKP 298

Query: 186 STLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLE 245
           +TLVPKEIPMIKKKNPV Q KIAPKV+ + K E     I  E E++EKE  DLK YATLE
Sbjct: 299 ATLVPKEIPMIKKKNPVLQIKIAPKVITEHKDECS---IMKESEDSEKEDFDLKHYATLE 358

Query: 246 DLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKS 305
           +L+ GKLPPEEILSLPMFKNY AG+P  VLYIKNLAKDVV DD Y+IFGSLFG +D AKS
Sbjct: 359 ELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKS 418

Query: 306 ALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
            L+VKLMQEGRMRGQAFVT PSVELA  ALN+VNGYVFKGKPMIIQFGR+P AAK
Sbjct: 419 GLSVKLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAK 459

[Close]

BLAST of CmoCh06G017300 vs. TrEMBL
Match: M5W4H5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 240/329 (72.95%), Postives = 272/329 (82.67%), Query Frame = 1


Query: 32  EPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 91
           EPIA RLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR
Sbjct: 140 EPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 199

Query: 92  LPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGV 151
           + LP+PPLPPSVP PP      P PPP   +P   ++SS+ESEMESS+E+++GK  SSG 
Sbjct: 200 MALPSPPLPPSVPVPP------PPPPPLAAKPPSADLSSEESEMESSDEEIDGK-PSSGT 259

Query: 152 SKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV 211
           S+    G KR + EAIVGP +DKDVAHE VG+KP+ LVPKE PMIKKKNP+ Q KIAPKV
Sbjct: 260 SR----GQKRVKREAIVGPAVDKDVAHEDVGLKPAILVPKERPMIKKKNPIVQIKIAPKV 319

Query: 212 VHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSP 271
           V++   E K+D I  + E  + E++D+ S+AT E+LERGKLPPEEILSLPMFKNY AG+P
Sbjct: 320 VNN---EHKDDSITKDSEHPKNESSDINSFATPEELERGKLPPEEILSLPMFKNYAAGNP 379

Query: 272 TSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELA 331
            SVLYIKNLAKD+V DD YYIFGSLFG +D AKS L++KLMQEGRMRGQAFVT PSVELA
Sbjct: 380 ASVLYIKNLAKDIVADDFYYIFGSLFGSVDAAKSGLSLKLMQEGRMRGQAFVTFPSVELA 439

Query: 332 QQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
             ALNLVNGYVFKGKPMIIQFGR+P A K
Sbjct: 440 HYALNLVNGYVFKGKPMIIQFGRNPAAGK 454

[Close]

BLAST of CmoCh06G017300 vs. TrEMBL
Match: A0A059DGY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 5.1e-123
Identity = 235/329 (71.43%), Postives = 271/329 (82.37%), Query Frame = 1


Query: 32  EPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 91
           EPIA +LGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR
Sbjct: 158 EPIAPKLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFR 217

Query: 92  LPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSGV 151
           + LPTPPLPPS   PP     PP PPP T +P + ++SS+ESE ESSEE+V+ K  S G 
Sbjct: 218 MALPTPPLPPSAAVPPPPP--PPPPPPITAKPLVADLSSEESEFESSEEEVDDKAQSLGF 277

Query: 152 SKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV 211
           S+  +S  KR+R EAIVGP IDKDVAHE+VG+KP+TLVPKEIP+IKKKNPV Q KI PK 
Sbjct: 278 SRV-KSSKKRARREAIVGPAIDKDVAHESVGLKPATLVPKEIPLIKKKNPVLQIKIIPKP 337

Query: 212 VHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSP 271
                 E K+D   N++EE ++E  + K +AT E+LERG+LPPEEILSLPMFKNYT G+P
Sbjct: 338 KVSAVDEHKDDSTANDIEEPDQEKLEKKQFATPEELERGRLPPEEILSLPMFKNYTPGNP 397

Query: 272 TSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELA 331
             VLYIKNLAKDV+ DD ++IFGSLFG  D+AKS L VKLMQEGRMRGQAFVT PS+E+A
Sbjct: 398 APVLYIKNLAKDVIVDDFHFIFGSLFGSADDAKSTLNVKLMQEGRMRGQAFVTFPSIEIA 457

Query: 332 QQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
           Q+ALN+VNGYVFKGKPMIIQFGR+P A+K
Sbjct: 458 QRALNVVNGYVFKGKPMIIQFGRNPSASK 483

[Close]

BLAST of CmoCh06G017300 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 373.2 bits (957), Expect = 1.8e-103
Identity = 202/330 (61.21%), Postives = 245/330 (74.24%), Query Frame = 1


Query: 31  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 90
           GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PF
Sbjct: 139 GEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPF 198

Query: 91  RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEEDVEGKYNSSG 150
           RL LPTPPLP + P                 +  + + SS ESEMES E+          
Sbjct: 199 RLALPTPPLPKAGPQ----------------QTDLEHQSSSESEMESDED---------- 258

Query: 151 VSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPK 210
              T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K   V Q KI  K
Sbjct: 259 -IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSK 318

Query: 211 VVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGS 270
           V  D  +E  E++  +  +E +++ ++LK +A+LE+LE+G+LPP++ILSLPMFKNYTAG+
Sbjct: 319 VTQDEYKEESENE--DPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGN 378

Query: 271 PTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVEL 330
           P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRGQAF+T PSVE+
Sbjct: 379 PSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEV 438

Query: 331 AQQALNLVNGYVFKGKPMIIQFGRSPGAAK 361
           A +ALNLVNG+VFKGKPMIIQFGR+PGAAK
Sbjct: 439 AHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]

BLAST of CmoCh06G017300 vs. NCBI nr
Match: gi|659094661|ref|XP_008448178.1| (PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo])

HSP 1 Score: 611.7 bits (1576), Expect = 8.4e-172
Identity = 320/362 (88.40%), Postives = 330/362 (91.16%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIK    KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPA
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK D  NN+ E  EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVDKTNNDGEGAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAA 360
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ ALNLVNGYVFKGKPMIIQFGR+PGA 
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQLALNLVNGYVFKGKPMIIQFGRNPGAV 358

Query: 361 KG 362
           KG
Sbjct: 361 KG 358

[Close]

BLAST of CmoCh06G017300 vs. NCBI nr
Match: gi|449444421|ref|XP_004139973.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus])

HSP 1 Score: 610.5 bits (1573), Expect = 1.9e-171
Identity = 317/362 (87.57%), Postives = 331/362 (91.44%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAA 360
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ+ALNLVNGYVFKGKPMIIQFGR+PG  
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQRALNLVNGYVFKGKPMIIQFGRNPGGV 358

Query: 361 KG 362
           KG
Sbjct: 361 KG 358

[Close]

BLAST of CmoCh06G017300 vs. NCBI nr
Match: gi|778712593|ref|XP_011656912.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 561.6 bits (1446), Expect = 1.0e-156
Identity = 294/336 (87.50%), Postives = 307/336 (91.37%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQAL 336
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ+AL
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQRAL 332

[Close]

BLAST of CmoCh06G017300 vs. NCBI nr
Match: gi|700191445|gb|KGN46649.1| (hypothetical protein Csa_6G118290 [Cucumis sativus])

HSP 1 Score: 561.6 bits (1446), Expect = 1.0e-156
Identity = 294/336 (87.50%), Postives = 307/336 (91.37%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+ AAIKD   KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEGAAIKDAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP 
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPV 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TTRSQVTNMPSDESEMESSEEDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK  +INN+ EE EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVGNINNDGEEAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQAL 336
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ+AL
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQRAL 332

[Close]

BLAST of CmoCh06G017300 vs. NCBI nr
Match: gi|659094651|ref|XP_008448172.1| (PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo])

HSP 1 Score: 561.2 bits (1445), Expect = 1.3e-156
Identity = 296/336 (88.10%), Postives = 305/336 (90.77%), Query Frame = 1


Query: 1   MDDAAIKDCTPKDHRSKDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60
           M+DAAIK    KDH S+DHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL
Sbjct: 1   MEDAAIKGAISKDHWSRDHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNIL 60

Query: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPA 120
           TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPA
Sbjct: 61  TNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPA 120

Query: 121 TPRPQITNMSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHE 180
           T R Q+TNM SDESEMESSEEDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE
Sbjct: 121 TSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHE 180

Query: 181 TVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLK 240
            VGVKPSTLVPKEIPMIKKKNPV Q +IAPKV+HD    GK D  NN+ E  EKEA DLK
Sbjct: 181 AVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHD----GKVDKTNNDGEGAEKEADDLK 240

Query: 241 SYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGG 300
            YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFGSLF G
Sbjct: 241 PYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEG 300

Query: 301 IDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQAL 336
           IDEAKSALTVKLMQEGRMRGQAFVT PS+ELAQ AL
Sbjct: 301 IDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQLAL 332

The following BLAST results are available for this feature:

BLAST of CmoCh06G017300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1165_ARATH	3.2e-102	61.21	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G...	[more]
RBM40_PONAB	4.2e-30	32.89	RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1	[more]
RBM40_HUMAN	7.2e-30	32.63	RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1	[more]
RBM40_BOVIN	1.4e-28	32.51	RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1	[more]
RBM40_MOUSE	6.7e-28	32.89	RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2	[more]

BLAST of CmoCh06G017300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCT1_CUCSA	7.0e-157	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1	[more]
D7SNK2_VITVI	1.7e-131	72.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=...	[more]
F6HYT0_VITVI	2.9e-126	70.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=...	[more]
M5W4H5_PRUPE	1.3e-123	72.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005530mg PE=4 SV=1	[more]
A0A059DGY1_EUCGR	5.1e-123	71.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1	[more]

BLAST of CmoCh06G017300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09230.1	1.8e-103	61.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh06G017300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094661\|ref\|XP_008448178.1\|	8.4e-172	88.40	PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo]	[more]
gi\|449444421\|ref\|XP_004139973.1\|	1.9e-171	87.57	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cu...	[more]
gi\|778712593\|ref\|XP_011656912.1\|	1.0e-156	87.50	PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cu...	[more]
gi\|700191445\|gb\|KGN46649.1\|	1.0e-156	87.50	hypothetical protein Csa_6G118290 [Cucumis sativus]	[more]
gi\|659094651\|ref\|XP_008448172.1\|	1.3e-156	88.10	PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017300.1	CmoCh06G017300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 275..347 score: 8.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 274..351 score: 2.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 273..355 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 268..356 score: 4.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 253..358 score: 1.61
None	No IPR available	unknown	Coil	Coil	coord: 221..241 scor
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 1..360 score: 3.2E
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING PROTEIN 40	coord: 1..360 score: 3.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017300	CmaCh06G017430	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017300	Cp4.1LG08g06510	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G017300	Carg23330	Silver-seed gourd	carcmoB0383

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017300	Cucumber (Chinese Long) v3	cmocucB0956
CmoCh06G017300	Watermelon (97103) v2	cmowmbB821
CmoCh06G017300	Wax gourd	cmowgoB0989
CmoCh06G017300	Cucumber (Gy14) v1	cgycmoB0941
CmoCh06G017300	Cucurbita maxima (Rimu)	cmacmoB270
CmoCh06G017300	Cucurbita maxima (Rimu)	cmacmoB273
CmoCh06G017300	Wild cucumber (PI 183967)	cmocpiB818
CmoCh06G017300	Cucumber (Chinese Long) v2	cmocuB810
CmoCh06G017300	Melon (DHL92) v3.5.1	cmomeB748
CmoCh06G017300	Watermelon (Charleston Gray)	cmowcgB732
CmoCh06G017300	Watermelon (97103) v1	cmowmB785
CmoCh06G017300	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017300	Bottle gourd (USVL1VR-Ls)	cmolsiB748
CmoCh06G017300	Cucumber (Gy14) v2	cgybcmoB404
CmoCh06G017300	Melon (DHL92) v3.6.1	cmomedB850