Cp4.1LG08g05950 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein transport protein GOT1
Location	Cp4.1LG08 : 565382 .. 567101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGCATCTAGCCAGTGGCACGTCCCTGAATTGCTCTTCTCTTCGTGTTGAGTTCAGCCATTTCTGTCTGCACTCTCAGGTTCTTCTCTCTTTCTCCTTTCATTACTCTAACTCTTCGTTATGCATTCGTATTCCTTTAATTCTGCTGTTTTCATTGCATAACAACAATAATCGCCTGCAATTTGCTGCTCTCTCTTATGCTCATACTGATTTAATTGATGTAAATCTCTGTCTCTTTGTTATGTTCCAGGTTTTTATTAGATTTGTTCTCGAAACCTTGTTATTTGTTGTTCTGGTTGATTGATTCATTGATGGAACTTCATCTGGATCTTGTATGACTTTTCTCAATTTTTGCTGCGCTAACCCTAGGATTTTTGTTGATTGAAGTTGCTTTGCTGATCTGATCGGCCTGTTTCTTCTTGATTTCGTTTTGAAATTATGCAGTGAAGGCAGGGAGGTGAATTTCAATTGTCAGTAGATATGGTTTCCTTTGAAATGAATGATCGCAAGAGTAAGTTTACTATTTCTTGCCGATGGACTATCCTGTAAAGTGGATCGGTTTCTCCTTTCAAGTAATTAGCTATTGGTTTAGGCCACTTGACTATTACAGTATTATCGTTTTATTCTGTTTGTAGTTTGGTAATTAGAATGTTTGGAATGAGTGTTCTGTTGGTCATAGGTTTGAATATGGGGAATCCGGCGTTGGCAATGGCCATGCGATGGAGTTTTCGATCACTTAATCTAGTATTGTTGCTTCTCGTCTGTATTTGCTTTCTTGGAACCGAAAATGTGTTGAAATGGAATTTTTGGTCTTTAACTAAGTTTAGTGGCTAGACACCATTTATAGACATTTTTATCCTATTAAGTCATAGATTGCTTTCACACATATTCTCAATGCTACGTATTTAGTTGATTTTTGCGTGTCTACTTTGGCAATATTCACGCATATAGGAGTGAAGCTGTGTGGTCTTTTCTAATTGTTTTGTCTCTTATATGGAATTGTTAATTTGTAATGGCATTAACGAGGAAATTTTCAAATGAGCAGAGATTGGCCTAGGACTGACAGGATTTGGGATATTTTTCTCATTCCTGGGAATTGTATTCTTCTTTGACAAGGGATTACTTGCCATGGGAAATGTAAGTGTAAAATTTATATTTTTCTCGACCCAAGTAAAAAGATTTATAATGCTTGTTTCATTTCAATGTAAACTCTTAACACTACCACTTTTCTGATTCGCTGAATCAGATCCTGTTCTTCTCAGGAGTAACTCTCACCATTGGACTCAAGTCAACCATGCAATTCTTTATGAAACGTCAAAATTTTAAGGTCAGTGCCAGAGATAGATACTCTTTTCCTCATACTCGTCCTTTATCGTGCATGCATTTTTTTTTTCATGACAATATGCTATTCATTAATTGTGCAGGGAACAATTTCTTTTGGTTTAGGGTTCTTCTTTGTTATCATAGGATGGCCAATCATTGGCATGATATTGGAAGCGTATGGTTTTGTTGTTCTTTTCAGGTTTGTTGGAACCATGTGGCTACAATTTCAATTTGTCTGTATATGTCTTTCTAATATTGGGCTGTGCTGAATGTTGATAAATTATACTGTGCAGTGGCTTCTGGCCAACATTGGCAGTCTTTCTTCAGAAAATTCCAGTTCTTGGATGGTTATTTCAGCAACCATATGTCAGATCGGTTGGTTCATACTTCTTTTAG

mRNA sequence

GAATGCATCTAGCCAGTGGCACGTCCCTGAATTGCTCTTCTCTTCGTGTTGAGTTCAGCCATTTCTGTCTGCACTCTCAGTGAAGGCAGGGAGGTGAATTTCAATTGTCAGTAGATATGGTTTCCTTTGAAATGAATGATCGCAAGAAGATTGGCCTAGGACTGACAGGATTTGGGATATTTTTCTCATTCCTGGGAATTGTATTCTTCTTTGACAAGGGATTACTTGCCATGGGAAATATCCTGTTCTTCTCAGGAGTAACTCTCACCATTGGACTCAAGTCAACCATGCAATTCTTTATGAAACGTCAAAATTTTAAGGGAACAATTTCTTTTGGTTTAGGGTTCTTCTTTGTTATCATAGGATGGCCAATCATTGGCATGATATTGGAAGCGTATGGTTTTGTTGTTCTTTTCAGTGGCTTCTGGCCAACATTGGCAGTCTTTCTTCAGAAAATTCCAGTTCTTGGATGGTTATTTCAGCAACCATATGTCAGATCGGTTGGTTCATACTTCTTTTAG

Coding sequence (CDS)

ATGGTTTCCTTTGAAATGAATGATCGCAAGAAGATTGGCCTAGGACTGACAGGATTTGGGATATTTTTCTCATTCCTGGGAATTGTATTCTTCTTTGACAAGGGATTACTTGCCATGGGAAATATCCTGTTCTTCTCAGGAGTAACTCTCACCATTGGACTCAAGTCAACCATGCAATTCTTTATGAAACGTCAAAATTTTAAGGGAACAATTTCTTTTGGTTTAGGGTTCTTCTTTGTTATCATAGGATGGCCAATCATTGGCATGATATTGGAAGCGTATGGTTTTGTTGTTCTTTTCAGTGGCTTCTGGCCAACATTGGCAGTCTTTCTTCAGAAAATTCCAGTTCTTGGATGGTTATTTCAGCAACCATATGTCAGATCGGTTGGTTCATACTTCTTTTAG

Protein sequence

MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWLFQQPYVRSVGSYFF

Homology

[Close]

BLAST of Cp4.1LG08g05950 vs. Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-30
Identity = 65/123 (52.85%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 6   MNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMKRQ 65
           + D +KIG+GLTGFG+FF F G++ FFDK LLA+GN+LF +G+   IGL+ T +FF +R 
Sbjct: 4   LTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQRH 63

Query: 66  NFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWLFQQPY 125
             K T  F  G F V+IGWP+IGMI E YGF +LF GF+P +  F++++PVLG L   P 
Sbjct: 64  KVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPG 123

Query: 126 VRS 129
           +RS
Sbjct: 124 IRS 126

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BLAST of Cp4.1LG08g05950 vs. Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 6   MNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMKRQ 65
           + D +KIG+GLTGFG+FF F G++ FFDK LLA+GN+LF +G+   IGL+ T +FF ++ 
Sbjct: 4   LTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKH 63

Query: 66  NFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWLFQQPY 125
             K T  F  G F V+IGWP+IGMI E YGF +LF GF+P +  F++++PVLG L   P 
Sbjct: 64  KMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPG 123

Query: 126 VRS 129
           +RS
Sbjct: 124 IRS 126

[Close]

BLAST of Cp4.1LG08g05950 vs. Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 6   MNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMKRQ 65
           + D +KIG+GLTGFG+FF F G++ FFDK LLA+GN+LF +G+   IGL+ T +FF ++ 
Sbjct: 4   LTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKH 63

Query: 66  NFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWLFQQPY 125
             K T  F  G F V+IGWP+IGMI E YGF +LF GF+P +  F++++PVLG L   P 
Sbjct: 64  KMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPG 123

Query: 126 VRS 129
           +RS
Sbjct: 124 IRS 126

[Close]

BLAST of Cp4.1LG08g05950 vs. Swiss-Prot
Match: GOT1_CAEEL (Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-25
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           M++FE++  K+IG+GLT FG FF FLG++ F D  LLA+GN+LF  G+T  IG++ T+ F
Sbjct: 1   MMNFEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           F + +  KG+I F  G   V+ G+P+ GMI E +GF+VLF GF P +   L+ IP +  +
Sbjct: 61  FFEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTI 120

Query: 121 FQQPYVRSV 130
              P +R V
Sbjct: 121 TYLPGIRQV 129

[Close]

BLAST of Cp4.1LG08g05950 vs. Swiss-Prot
Match: GOT1A_MOUSE (Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-24
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 1


Query: 10  KKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMKRQNFKG 69
           +KIG+G+TGFG+FF   GI+ +FD  LLA GN+LF +G++L IGL+ T  FF +R   KG
Sbjct: 8   QKIGVGITGFGVFFILFGILLYFDSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQRHKLKG 67

Query: 70  TISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQ---KIPVLGWLFQQ 124
           T  F  G   V++ WP++GM+LEAYGF+ LF GF+P +  FL     IP L  LFQ+
Sbjct: 68  TSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLFQK 124

[Close]

BLAST of Cp4.1LG08g05950 vs. TrEMBL
Match: A0A0A0KU00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G016390 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.7e-64
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFG+FFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGVFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKGTISFGLGFFFVIIGWPI GMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL
Sbjct: 61  FMKRQNFKGTISFGLGFFFVIIGWPIFGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120

Query: 121 FQQPYVRS 129
           FQQPYVRS
Sbjct: 121 FQQPYVRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. TrEMBL
Match: A0A061FRI8_THECC (Got1/Sft2-like vescicle transport protein family isoform 1 OS=Theobroma cacao GN=TCM_036309 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.1e-62
Identity = 119/129 (92.25%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKGTISFG+GFFFV+IGWPI GMILEAYGFVVLFSGFWPTLAVF+Q+IP+LGWL
Sbjct: 61  FMKRQNFKGTISFGVGFFFVVIGWPIFGMILEAYGFVVLFSGFWPTLAVFMQRIPILGWL 120

Query: 121 FQQPYVRSV 130
           FQQPY+RS+
Sbjct: 121 FQQPYIRSL 129

[Close]

BLAST of Cp4.1LG08g05950 vs. TrEMBL
Match: A0A0D2VB33_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141000 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-61
Identity = 120/131 (91.60%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMK QNFKGTISFG+GFFFV++GWPI GMILE YGFVVLFSGFWPTLAVFLQ+IP+LGWL
Sbjct: 61  FMKPQNFKGTISFGVGFFFVVVGWPIFGMILETYGFVVLFSGFWPTLAVFLQRIPILGWL 120

Query: 121 FQQPYVRSVGS 132
           FQQPYVRSV S
Sbjct: 121 FQQPYVRSVCS 131

[Close]

BLAST of Cp4.1LG08g05950 vs. TrEMBL
Match: A0A0D2TXQ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141000 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.5e-61
Identity = 118/129 (91.47%), Postives = 125/129 (96.90%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMK QNFKGTISFG+GFFFV++GWPI GMILE YGFVVLFSGFWPTLAVFLQ+IP+LGWL
Sbjct: 61  FMKPQNFKGTISFGVGFFFVVVGWPIFGMILETYGFVVLFSGFWPTLAVFLQRIPILGWL 120

Query: 121 FQQPYVRSV 130
           FQQPYVRS+
Sbjct: 121 FQQPYVRSL 129

[Close]

BLAST of Cp4.1LG08g05950 vs. TrEMBL
Match: A0A0B0NQN1_GOSAR (Vesicle transport GOT1A OS=Gossypium arboreum GN=F383_10652 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.9e-61
Identity = 118/128 (92.19%), Postives = 124/128 (96.88%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMK QNFKGTISFG+GFFFV++GWPI GMILE YGFVVLFSGFWPTLAVFLQ+IP+LGWL
Sbjct: 61  FMKPQNFKGTISFGVGFFFVVVGWPIFGMILETYGFVVLFSGFWPTLAVFLQRIPILGWL 120

Query: 121 FQQPYVRS 129
           FQQPYVRS
Sbjct: 121 FQQPYVRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. TAIR10
Match: AT3G49420.1 (AT3G49420.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 230.7 bits (587), Expect = 5.2e-61
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           M+SFEMNDRKKIGLGLTGFG+FFSFLGIVF FDKGLLAMGNILF SGV+LTIG KSTMQF
Sbjct: 1   MMSFEMNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQN+KGTISFG+GFFFVIIGWPI+GM+LE YGF VLFSGFWPTLAVF QKIPVLGW+
Sbjct: 61  FMKRQNYKGTISFGVGFFFVIIGWPILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWI 120

Query: 121 FQQPYVRS 129
            QQPY+RS
Sbjct: 121 IQQPYIRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. TAIR10
Match: AT5G01430.1 (AT5G01430.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 230.7 bits (587), Expect = 5.2e-61
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           M+SFEMNDRKKIGLGLTGFG+FFSFLGIVF FDKGLLAMGNILF SGV+LTIG KSTMQF
Sbjct: 1   MMSFEMNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQN+KGTISFG+GFFFVIIGWPI+GM+LE YGF VLFSGFWPTLAVF QKIPVLGW+
Sbjct: 61  FMKRQNYKGTISFGVGFFFVIIGWPILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWI 120

Query: 121 FQQPYVRS 129
            QQPY+RS
Sbjct: 121 IQQPYIRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. TAIR10
Match: AT3G03180.1 (AT3G03180.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 210.3 bits (534), Expect = 7.3e-55
Identity = 98/129 (75.97%), Postives = 115/129 (89.15%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           M S EMND KKIGLGLTGFG+FF+FLG++F FDKGL+AMGNILF +GVTLTIG+   +QF
Sbjct: 1   MASLEMNDLKKIGLGLTGFGVFFTFLGVIFVFDKGLIAMGNILFLAGVTLTIGINPAIQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           F KRQNFKGTISFGLGF  V+ GWPI G++LE+YGF+VLFSGFWPTLAVFLQ+IP+LGWL
Sbjct: 61  FTKRQNFKGTISFGLGFLLVVFGWPIFGLLLESYGFLVLFSGFWPTLAVFLQRIPLLGWL 120

Query: 121 FQQPYVRSV 130
            QQPY+RS+
Sbjct: 121 LQQPYIRSL 129

[Close]

BLAST of Cp4.1LG08g05950 vs. TAIR10
Match: AT1G05785.1 (AT1G05785.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 137.1 bits (344), Expect = 7.9e-33
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 4   FEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFMK 63
           +E+ ++KK+GLGL GFG+ F+FLG++ +FD+GLLA+GN+ +  GV L +G +ST + F  
Sbjct: 3   YEITEQKKVGLGLIGFGLSFTFLGVILYFDRGLLALGNLFWLIGVGLLLGWQSTWRVFTN 62

Query: 64  RQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWLFQQ 123
             N +GTI F LG F + + WPIIG+ILE YG +VLF GFW T+  FL +IP +GW+ Q 
Sbjct: 63  VNNLRGTICFVLGLFLIFVRWPIIGIILEIYGVIVLFGGFWSTVKAFLSQIPFVGWIIQY 122

Query: 124 P 125
           P
Sbjct: 123 P 123

[Close]

BLAST of Cp4.1LG08g05950 vs. NCBI nr
Match: gi|449468772|ref|XP_004152095.1| (PREDICTED: vesicle transport protein GOT1B [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFG+FFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGVFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKGTISFGLGFFFVIIGWPI GMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL
Sbjct: 61  FMKRQNFKGTISFGLGFFFVIIGWPIFGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120

Query: 121 FQQPYVRS 129
           FQQPYVRS
Sbjct: 121 FQQPYVRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. NCBI nr
Match: gi|659107996|ref|XP_008453962.1| (PREDICTED: vesicle transport protein GOT1B-like [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFG+FFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGVFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKGT+SFGLGFFFVIIGWPI GMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL
Sbjct: 61  FMKRQNFKGTVSFGLGFFFVIIGWPIFGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120

Query: 121 FQQPYVRS 129
           FQQPYVRS
Sbjct: 121 FQQPYVRS 128

[Close]

BLAST of Cp4.1LG08g05950 vs. NCBI nr
Match: gi|764571035|ref|XP_011462621.1| (PREDICTED: vesicle transport protein GOT1B-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-62
Identity = 120/129 (93.02%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLG+VFFFDKGLLAMGNILFFSGVTLTIG KSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGMVFFFDKGLLAMGNILFFSGVTLTIGFKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKG+ISFG+GFFFV+IGWPI+GM+LEAYGFVVLFSGFWPTLAVFLQKIP+LGW+
Sbjct: 61  FMKRQNFKGSISFGVGFFFVLIGWPIVGMLLEAYGFVVLFSGFWPTLAVFLQKIPILGWV 120

Query: 121 FQQPYVRSV 130
           FQQPYVRSV
Sbjct: 121 FQQPYVRSV 129

[Close]

BLAST of Cp4.1LG08g05950 vs. NCBI nr
Match: gi|590603072|ref|XP_007019913.1| (Got1/Sft2-like vescicle transport protein family isoform 1 [Theobroma cacao])

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 119/129 (92.25%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMKRQNFKGTISFG+GFFFV+IGWPI GMILEAYGFVVLFSGFWPTLAVF+Q+IP+LGWL
Sbjct: 61  FMKRQNFKGTISFGVGFFFVVIGWPIFGMILEAYGFVVLFSGFWPTLAVFMQRIPILGWL 120

Query: 121 FQQPYVRSV 130
           FQQPY+RS+
Sbjct: 121 FQQPYIRSL 129

[Close]

BLAST of Cp4.1LG08g05950 vs. NCBI nr
Match: gi|763813354|gb|KJB80206.1| (hypothetical protein B456_013G141000 [Gossypium raimondii])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-61
Identity = 120/131 (91.60%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIVFFFDKGLLAMGNILFFSGVTLTIGLKSTMQF 60
           MVSFEMNDRKKIGLGLTGFGIFFSFLGI+FFFDKGLLAMGNILF SGVTLTIGLKSTMQF
Sbjct: 1   MVSFEMNDRKKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFISGVTLTIGLKSTMQF 60

Query: 61  FMKRQNFKGTISFGLGFFFVIIGWPIIGMILEAYGFVVLFSGFWPTLAVFLQKIPVLGWL 120
           FMK QNFKGTISFG+GFFFV++GWPI GMILE YGFVVLFSGFWPTLAVFLQ+IP+LGWL
Sbjct: 61  FMKPQNFKGTISFGVGFFFVVVGWPIFGMILETYGFVVLFSGFWPTLAVFLQRIPILGWL 120

Query: 121 FQQPYVRSVGS 132
           FQQPYVRSV S
Sbjct: 121 FQQPYVRSVCS 131

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GOT1B_MOUSE	1.2e-30	52.85	Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1	[more]
GOT1B_BOVIN	2.0e-30	52.03	Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1	[more]
GOT1B_HUMAN	2.0e-30	52.03	Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1	[more]
GOT1_CAEEL	7.4e-25	44.96	Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=...	[more]
GOT1A_MOUSE	6.3e-24	50.43	Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1	[more]

BLAST of Cp4.1LG08g05950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU00_CUCSA	5.7e-64	98.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G016390 PE=4 SV=1	[more]
A0A061FRI8_THECC	4.1e-62	92.25	Got1/Sft2-like vescicle transport protein family isoform 1 OS=Theobroma cacao GN...	[more]
A0A0D2VB33_GOSRA	1.2e-61	91.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141000 PE=4 SV=1	[more]
A0A0D2TXQ8_GOSRA	4.5e-61	91.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141000 PE=4 SV=1	[more]
A0A0B0NQN1_GOSAR	5.9e-61	92.19	Vesicle transport GOT1A OS=Gossypium arboreum GN=F383_10652 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g05950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49420.1	5.2e-61	87.50	Got1/Sft2-like vescicle transport protein family	[more]
AT5G01430.1	5.2e-61	87.50	Got1/Sft2-like vescicle transport protein family	[more]
AT3G03180.1	7.3e-55	75.97	Got1/Sft2-like vescicle transport protein family	[more]
AT1G05785.1	7.9e-33	51.24	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of Cp4.1LG08g05950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468772\|ref\|XP_004152095.1\|	8.1e-64	98.44	PREDICTED: vesicle transport protein GOT1B [Cucumis sativus]	[more]
gi\|659107996\|ref\|XP_008453962.1\|	1.1e-63	97.66	PREDICTED: vesicle transport protein GOT1B-like [Cucumis melo]	[more]
gi\|764571035\|ref\|XP_011462621.1\|	3.4e-62	93.02	PREDICTED: vesicle transport protein GOT1B-like [Fragaria vesca subsp. vesca]	[more]
gi\|590603072\|ref\|XP_007019913.1\|	5.8e-62	92.25	Got1/Sft2-like vescicle transport protein family isoform 1 [Theobroma cacao]	[more]
gi\|763813354\|gb\|KJB80206.1\|	1.7e-61	91.60	hypothetical protein B456_013G141000 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR007305	Vesicle_transpt_Got1/SFT2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05950.1	Cp4.1LG08g05950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 21..115 score: 4.4
None	No IPR available	PANTHER	PTHR21493	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	coord: 1..129 score: 1.7
None	No IPR available	PANTHER	PTHR21493:SF9	GOLGI TRANSPORT PROTEIN 1-RELATED	coord: 1..129 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g05950	Cucsa.094630	Cucumber (Gy14) v1	cgycpeB0200
Cp4.1LG08g05950	CmaCh14G014870	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g05950	CmaCh06G016380	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g05950	CmoCh06G016370	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g05950	CmoCh14G015230	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g05950	Cla010830	Watermelon (97103) v1	cpewmB840
Cp4.1LG08g05950	Csa4G016390	Cucumber (Chinese Long) v2	cpecuB869
Cp4.1LG08g05950	MELO3C017698	Melon (DHL92) v3.5.1	cpemeB817
Cp4.1LG08g05950	ClCG07G015830	Watermelon (Charleston Gray)	cpewcgB791
Cp4.1LG08g05950	CSPI04G03540	Wild cucumber (PI 183967)	cpecpiB871
Cp4.1LG08g05950	Lsi07G000650	Bottle gourd (USVL1VR-Ls)	cpelsiB723
Cp4.1LG08g05950	MELO3C017698.2	Melon (DHL92) v3.6.1	cpemedB955
Cp4.1LG08g05950	CsaV3_4G003550	Cucumber (Chinese Long) v3	cpecucB1065
Cp4.1LG08g05950	Bhi01G002074	Wax gourd	cpewgoB1114
Cp4.1LG08g05950	CsGy4G003440	Cucumber (Gy14) v2	cgybcpeB575
Cp4.1LG08g05950	Carg15483	Silver-seed gourd	carcpeB0974
Cp4.1LG08g05950	Carg22434	Silver-seed gourd	carcpeB0279

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g05950	Cp4.1LG03g12640	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:

None