Cp4.1LG08g05090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectin lyase-like superfamily protein
LocationCp4.1LG08 : 1083263 .. 1087086 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCCTTTCTCACACAGGCGTCACTCGTCCCGTCTTATTATTCGAGTCGATAATTTTACAATTTGACGCTCCTCCGTGTGGGATCGTATTGAAAAATTTTGAACATACATCGACTAGTTACTAGGAGTCGTCGTGTCATGTCGGGTATGTTGTAGTTCCGTGTTCTCTATGGGAGTTGTTCCATTGGGATAAGACAATGAAAAAATAGGGTTGGTTTGTTGGGTTATTTGGTTTTTTTTAGCCCTTGTGGATTCAACAAACGTCATCGAATTCTCTCTCTTTTGGGCATTGGAGGCGAAACGCCCAAATTTTAAGTCCAGGAGAAGAAGACATAGGCATAGGGCAAAACCCTTTTGCTGTGATGGAGGGCCGTTTCAAACAATTTTGTCGGCGATAGACGTTATTAATCATATTCACAAACAGGGTAATTGCCAATTAGTGGCAATTAATGTTGTTGCTAATCAAAATTTCCCCTTGCTTTTGTTTTTGATTTTATTCTCCCAAGCAAGAACAAGGCAGATTTTCTTCACCCGTTTCCTTCTTTTCTTTCTTTTTAGTTTTGGGGTGGATTTGGTTGTTTCTCTCTCTCTCTCTCTCTCGGCTGTCGTTTTTACAGCGTATATTGCCCTCGTTTCCTTCCTTTCCCTACAATTTCCTTATGTAAGTTCTTGATTTTGGTTGTGCATTTGAGATGGACAGAGTCATGGAGAAGCGTTGAGTCGGTGTGCGACCCCTTTAGNCTCCCCTTTGCCTTGCCGTGTTTGCTGCTGGTTTGCCTCTTCTTCATCTCGATTTCTCTTCTTTTTGGTCATTGTCGTTCCTGGCTTTGACCAATGAGGATGCTAGTAAGTACGTTTCTTTTATCTGGGTTTTCTTTGTTTTTTTGTTTTACGAATCATTTTATGTCGATTTCTGAAGAACCCCTTTTGTTCTTACCCTTGTTTTTCAATGTCTTTCACCATCTGTTTCATCTCTGTGTTCTTTACAGATGGTCCAGAAACCCTTTTTGACTTTTCCTGATTTGTATCCCTTTCCTTGATGATGTTGATTTTCTCGCAGGTTTTGATTTCCAGATTTGATGTTCTTCTGAATTCCTCTTTGATCTGTTCTTCATCTTGTCGGATTAGTTTTTTCTTGCGATTTTGGGCGATTTGTTATCTGGGTTTCCACCATTGTTGTCTTTTTAAGCTTCTTTTGGTTCATTCTTTAGGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCAATATTAGATCCAAGGCCACACAGTGTGTCTATCTTGGAGTTTGGGGCTGTTGGTGATGGCAAAACTCTCAACACCATTGCCTTCCAAAACGCCATTTTCTATCTCAAATCCTTTGCTGATAAGGGTGGAGCTCAGCTTTATGTTCCACCGGGAAAATGGCTCACTGGAAGCATTAATCTCACTAGCCATCTTACCCTTTTTCTGGAAAAAGGTGCTACCATTCTTGGCTCTCAGGTATGTTCTTATTCTTGGATGAACAAAGTGTTTGATTTTAGGCATTTGTTTTGTAATTATCGATCGTCTCTTAAACACAGGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGCGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTTTGTCGTTTGTTCGACGCTTGATTTAGAATCTAGTTTTTGCGTATGCGATTCACTCGTATGAACATGTGTTATTGTCTTGATTTTCGATGTGCTAGGTGATGATGGTGTCATTGATGGACAGGGTTTGGTTTGGTGGGATTGGTTCACCTCTCATTCCTTAAACTACAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTTGTTTCGAATCTCAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGGTATGTCGTAACGTAGCTACTAGAATTCAGTTTCTTCTGCCTTTGTTTGTTCGTTTCACGTTGTTCGTATTTGTGAGCGAATCTGTATTGAAACATAAGTGTTTCATGTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGGTTTGTAATGCTTTCTTAGCTTCCTCATTGTCATTTGTTCGACTATTGGTGTGGGCTCCTCTGGCCGAATGGCTCGAGCACCATTGAAGAATATCTCATTTAATCGATCTCTCGCTCTCTCTCTCTCTCTGTCTCTCACGCACACACACCACGTAGTGCTCAGGAGAAGATGCCATCGAGAAAGATATCAAGGGCAGTTTGCTAAATGTCGTTAGCTCGTTTAAGGAAAACAAGTTCTTATGATTCGGGTTTGAGTCTAGAAAAGATGACTCGTTAGGAGTTTTCGACACGTAGTGGGATAGCATCATGATTAGAATGATTTATTGTGGGGTAATGTTTCGACATACATTTCATGGATTCATTAATGATGATCAAACCCGGACTTAAAATCTAGAAGTACGATGCGATTCGTTCATTTTTGCTTGTATTTAATAAGGCGATGACGCCTTTTCTAAATAAAATTTGATTGGTGCTTTCAGATTCTTCTGATCATGTATGCATAGAGGGCTGCAACATTGCCACGGGATATGACGCCATCGTCTTGAAGAGTGGCTGGGATCAGTATGGTATAGCCTATGGTAGACCATCTAAAAACATACACATCAGAAACGTCCACCTTCAGTCGTCTTCAGGTTCGTCCATTGCCTTTGGTAGCGAGATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCGATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTGATCCCGGCGCCCTGTTCTGATCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGAAGCCTTTGCCATCCAAGGTACAACAATATATATATTTTCAACCCTTGTCTTCTCCAAGTCAAGCAAGATTCTTTCAAATAAAAACCACATGTCTAGATTACTTGTTTTCTTCATTCTCTTAGAATTCCGTTCGTTCGTTCATGTTTCGGTCTGCAGATTTATTTGTACAGTTCGATTTCTTCATTCACGTGTAAGGAAATTTTTGGTAGTGATTTTTACAGGTCTTTCGGTTTCGTTTGTGTTGCGTTTTTTTTTTAAATTATTCCCTTCACCCTCTCCCCCCCTCAAGAGCTTGGTGCTTTGTAAGTTCACTGTAAATTGTTCATTTGTTGTGAAGAGCTGAAAGGATAAAACTCTTGTTGATGTGAAAAGCAATTCATGTGAAGCCAAGTGATTGGAATAAAGGGATCTTGGTGACACTTTGCTGCTTGTTAAGTGAATTAAGCTCGGTGTTTTTTTTTTGTCATGACATTTTCCACATGTCGATTTCTTAC

mRNA sequence

ATGCACCCTTTCTCACACAGGCGTCACTCGTCCCGTCTTATTATTCGAGTCGATAATTTTACAATTTGACGCTCCTCCGTGTGGGATCGTATTGAAAAATTTTGAACATACATCGACTAGTTACTAGGAGTCGTCGTGTCATGTCGGGTATGTTGTAGTTCCGTGTTCTCTATGGGAGTTGTTCCATTGGGATAAGACAATGAAAAAATAGGGTTGGTTTGTTGGGTTATTTGGTTTTTTTTAGCCCTTGTGGATTCAACAAACGTCATCGAATTCTCTCTCTTTTGGGCATTGGAGGCGAAACGCCCAAATTTTAAGTCCAGGAGAAGAAGACATAGGCATAGGGCAAAACCCTTTTGCTGTGATGGAGGGCCGTTTCAAACAATTTTGTCGGCGATAGACGTTATTAATCATATTCACAAACAGGGTAATTGCCAATTAGTGGCAATTAATGTTGTTGCTAATCAAAATTTCCCCTTGCTTTTGTTTTTGATTTTATTCTCCCAAGCAAGAACAAGGCAGATTTTCTTCACCCGTTTCCTTCTTTTCTTTCTTTTTAGTTTTGGGGTGGATTTGGTTGTTTCTCTCTCTCTCTCTCTCTCGGCTGTCGTTTTTACAGCGTATATTGCCCTCGTTTCCTTCCTTTCCCTACAATTTCCTTATGTAAGTTCTTGATTTTGGTTGTGCATTTGAGATGGACAGAGTCATGGAGAAGCGTTGAGTCGGTGTGCGACCCCTTTAGNCTCCCCTTTGCCTTGCCGTGTTTGCTGCTGGTTTGCCTCTTCTTCATCTCGATTTCTCTTCTTTTTGGTCATTGTCGTTCCTGGCTTTGACCAATGAGGATGCTAGTAAGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCAATATTAGATCCAAGGCCACACAGTGTGTCTATCTTGGAGTTTGGGGCTGTTGGTGATGGCAAAACTCTCAACACCATTGCCTTCCAAAACGCCATTTTCTATCTCAAATCCTTTGCTGATAAGGGTGGAGCTCAGCTTTATGTTCCACCGGGAAAATGGCTCACTGGAAGCATTAATCTCACTAGCCATCTTACCCTTTTTCTGGAAAAAGGTGCTACCATTCTTGGCTCTCAGGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGCGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTGATGATGGTGTCATTGATGGACAGGGTTTGGTTTGGTGGGATTGGTTCACCTCTCATTCCTTAAACTACAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTTGTTTCGAATCTCAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGATTCTTCTGATCATGTATGCATAGAGGGCTGCAACATTGCCACGGGATATGACGCCATCGTCTTGAAGAGTGGCTGGGATCAGTATGGTATAGCCTATGGTAGACCATCTAAAAACATACACATCAGAAACGTCCACCTTCAGTCGTCTTCAGGTTCGTCCATTGCCTTTGGTAGCGAGATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCGATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTGATCCCGGCGCCCTGTTCTGATCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGAAGCCTTTGCCATCCAAGGTACAACAATATATATATTTTCAACCCTTGTCTTCTCCAAGTCAAGCAAGATTCTTTCAAATAAAAACCACATGTCTAGATTACTTGTTTTCTTCATTCTCTTAGAATTCCGTTCGTTCGTTCATGTTTCGGTCTGCAGATTTATTTGTACAGTTCGATTTCTTCATTCACGTGTAAGGAAATTTTTGGTAGTGATTTTTACAGGTCTTTCGGTTTCGTTTGTGTTGCGTTTTTTTTTTAAATTATTCCCTTCACCCTCTCCCCCCCTCAAGAGCTTGGTGCTTTGTAAGTTCACTGTAAATTGTTCATTTGTTGTGAAGAGCTGAAAGGATAAAACTCTTGTTGATGTGAAAAGCAATTCATGTGAAGCCAAGTGATTGGAATAAAGGGATCTTGGTGACACTTTGCTGCTTGTTAAGTGAATTAAGCTCGGTGTTTTTTTTTTGTCATGACATTTTCCACATGTCGATTTCTTAC

Coding sequence (CDS)

ATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCGATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTGATCCCGGCGCCCTGTTCTGATCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGA

Protein sequence

MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHPDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL
Homology
[Close]
BLAST of Cp4.1LG08g05090 vs. Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-25
Identity = 54/141 (38.30%), Postives = 82/141 (58.16%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGI +V  E +   NS +GI  +T  GRGGY+K I +  + M+ +   F  +G++GSH
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNS-SSSTS 120
            D+ +DP A P++Q I  +++   N+ +A    G+   PFT I +SN+T  + + +    
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVP 434

Query: 121 WICSDVSGYSESVIPAPCSDL 141
           W C+DV G S  V P PCS L
Sbjct: 435 WTCTDVEGISSGVTPTPCSTL 455

[Close]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match: A0A0A0LAN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165090 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-70
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GI+ RTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 294 MSGGISNVLVEHVQLNNSFIGIQIRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 354 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 414 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 457

[Close]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match: A0A061ENJ0_THECC (Pectin lyase-like superfamily protein OS=Theobroma cacao GN=TCM_021274 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51
Identity = 103/162 (63.58%), Postives = 130/162 (80.25%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V VE  HLYNS +GIEFRTT+GRGGYI+ I+ISDV++ N+   F A GH+GSH
Sbjct: 447 MSGGISDVQVEQAHLYNSLSGIEFRTTRGRGGYIEDIIISDVDLLNVHMAFGAIGHYGSH 506

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD++DP+A P++Q ITLQN+ GTNI +AGNFTG++ESPFTSI LSNI+ S+NS+SSTSW
Sbjct: 507 PDDKYDPDAFPVLQKITLQNIIGTNITVAGNFTGIRESPFTSICLSNISLSINSASSTSW 566

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA--NSAGKAAVL 161
           +CS VSG+SESV P PC DL+   + SS  +     G+AAVL
Sbjct: 567 VCSYVSGFSESVFPEPCPDLENSNTSSSCVSLLKPNGRAAVL 608

[Close]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match: A0A0B0NH99_GOSAR (Putative polygalacturonase OS=Gossypium arboreum GN=F383_17527 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-51
Identity = 106/162 (65.43%), Postives = 131/162 (80.86%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V V+ +HLY+S TGIEFRTTKGRGGYIK I ISDV+M NI T F A+GHFGSH
Sbjct: 293 MSGGISDVQVQQLHLYDSLTGIEFRTTKGRGGYIKEIAISDVDMLNIKTAFCANGHFGSH 352

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FDP+ALP+V  IT+QN+ GTNI +AGNFTG++ESPFTSI LSN++ S+NS+SS+ W
Sbjct: 353 PDDKFDPDALPLVAKITIQNIIGTNISMAGNFTGIEESPFTSICLSNVSLSINSASSSPW 412

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA--NSAGKAAVL 161
            CS VSG+SESV P PCS+L+   + SS  +     G+AAVL
Sbjct: 413 QCSYVSGFSESVFPEPCSELNNPDASSSCFSLLKPNGRAAVL 454

[Close]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match: A0A0D2RPX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G194200 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.6e-51
Identity = 106/162 (65.43%), Postives = 130/162 (80.25%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V V+ +HLY+S TGIEFRTTKGRGGYIK I ISDV M NI T F A+GHFGSH
Sbjct: 293 MSGGISDVQVQQLHLYDSLTGIEFRTTKGRGGYIKEIAISDVNMLNIKTAFGANGHFGSH 352

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FDP+ALP+V  IT+QN+ GTNI +AGNFTG++ESPFTSI LSN++ S+NS+SS+ W
Sbjct: 353 PDDKFDPDALPLVAKITIQNIIGTNISMAGNFTGIEESPFTSICLSNVSLSINSASSSPW 412

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA--NSAGKAAVL 161
            CS VSG+SESV P PCS+L+   + SS  +     G+AAVL
Sbjct: 413 QCSYVSGFSESVFPEPCSELNNPDASSSCFSLLKPNGRAAVL 454

[Close]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match: A0A151STQ0_CAJCA (Putative polygalacturonase (Fragment) OS=Cajanus cajan GN=KK1_004429 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 102/160 (63.75%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISN+LVE+VHLYNS++GIEFRT +GRGGY+K I+++D+EMENI T  +A+G+ GSH
Sbjct: 271 MSGGISNILVENVHLYNSNSGIEFRTMRGRGGYMKEIIVTDIEMENIYTAIAATGNCGSH 330

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FDPNALP++  I LQ++ GTNI IAGNF GLQESPFT+I LSNIT S+NS SS +W
Sbjct: 331 PDDKFDPNALPLLDHIILQDMTGTNITIAGNFAGLQESPFTNICLSNITLSLNSLSSITW 390

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 161
            CS+V G+S+SV+P PC DL+T     SL + + GK AV+
Sbjct: 391 KCSNVYGFSDSVLPKPCPDLETLSDCLSLMSIN-GKTAVM 429

[Close]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match: AT3G06770.2 (AT3G06770.2 Pectin lyase-like superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-42
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V+V++ H++ S TGI FRTTKGRGGYIK I IS+++M  I T   A+G FGSH
Sbjct: 295 MSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIVANGSFGSH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD++D NALP+V  I L N+ G NI IAG   G++ESPF+S+ LSN++ SM+S SS SW
Sbjct: 355 PDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSW 414

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAV 160
            CS V G SESVIP PC +L          A++ G+AAV
Sbjct: 415 QCSYVYGSSESVIPEPCPEL-------KRDADAYGRAAV 446

[Close]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match: AT3G16850.1 (AT3G16850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-39
Identity = 74/140 (52.86%), Postives = 105/140 (75.00%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGG+S+V VE +++++S  G+ FRTT+GRGGYI+ I ISDV++ ++ T   A+GH GSH
Sbjct: 292 MSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSH 351

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FD +ALP+V  I ++N  G +I +AGN TG+ ESPFTSI L++I   + + S  SW
Sbjct: 352 PDDKFDRDALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLADI--HLQTRSEESW 411

Query: 121 ICSDVSGYSESVIPAPCSDL 141
           ICS+VSG+S+ V P PC +L
Sbjct: 412 ICSNVSGFSDDVSPEPCQEL 429

[Close]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match: AT5G49215.1 (AT5G49215.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V V   H++NS +GI FRTT GRGGYIK I IS++ M N+ T F A+G FG+H
Sbjct: 295 MSGGISDVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFLANGSFGTH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSS--T 120
           PD  FD NA P+V  I L ++ G NI  AG F G +ESPFTSI LSNI+ S+ +S+S   
Sbjct: 355 PDSGFDENAYPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSIKNSASPAD 414

Query: 121 SWICSDVSGYSESVIPAPCSDL 141
           SW CS V G SE V+P PC +L
Sbjct: 415 SWQCSYVDGSSEFVVPEPCLEL 436

[Close]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match: AT4G23820.1 (AT4G23820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 137.5 bits (345), Expect = 7.2e-33
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 2   SGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHP 61
           SGGI N++ EH+ L N   G+  +T  GRGGYIK I ISDV ++    G   +G  G HP
Sbjct: 293 SGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHP 352

Query: 62  DDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWI 121
           D+ ++PNALP+V+ I ++NV G N++ AG+  GL+ SPFT I LS I    + +S  +W 
Sbjct: 353 DENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTWK 412

Query: 122 CSDVSGYSESVIPAPCSDLDT 143
           CSDVSG S  V P PCS+L T
Sbjct: 413 CSDVSGTSLKVSPWPCSELRT 433

[Close]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match: AT5G41870.1 (AT5G41870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 1 

Query: 2   SGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHP 61
           SGGI NV VE++ LYNS  GI  +T  GRGG I+GI IS V +E + TG   SG  G HP
Sbjct: 298 SGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDHP 357

Query: 62  DDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWI 121
           DD+F+ +ALPIV+ IT++NV G  ++ AG   GL++SPFT++  SN+T +  +  S  W 
Sbjct: 358 DDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLT-GTKRSPIWK 417

Query: 122 CSDVSGYSESVIPAPCSDL 141
           CSDV G ++ V P PC +L
Sbjct: 418 CSDVVGAADKVNPTPCPEL 435

[Close]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match: gi|659076882|ref|XP_008438913.1| (PREDICTED: probable polygalacturonase isoform X1 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GIEFRTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 295 MSGGISNVLVEHVQLNNSFIGIEFRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 355 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 414

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 415 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 458

[Close]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match: gi|659076884|ref|XP_008438914.1| (PREDICTED: probable polygalacturonase isoform X2 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GIEFRTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 294 MSGGISNVLVEHVQLNNSFIGIEFRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 354 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 414 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 457

[Close]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match: gi|449432886|ref|XP_004134229.1| (PREDICTED: probable polygalacturonase isoform X2 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 3.1e-70
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GI+ RTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 294 MSGGISNVLVEHVQLNNSFIGIQIRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 354 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 414 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 457

[Close]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match: gi|778678970|ref|XP_011651065.1| (PREDICTED: probable polygalacturonase isoform X1 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 3.1e-70
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GI+ RTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 295 MSGGISNVLVEHVQLNNSFIGIQIRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 355 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 414

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 415 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 458

[Close]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match: gi|1009163387|ref|XP_015899940.1| (PREDICTED: probable polygalacturonase [Ziziphus jujuba])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 110/163 (67.48%), Postives = 130/163 (79.75%), Query Frame = 1 

Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V V+HVHLYNS +G+EFRTTKGRGGYIK + ISD+ M+N+   FSASG  G+H
Sbjct: 294 MSGGISSVQVDHVHLYNSYSGVEFRTTKGRGGYIKRVTISDILMKNVYKAFSASGQCGAH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FDPNALP++ DITLQ+V GTNI IAGNFTG+QESPFTSI LSNIT S NS S  +W
Sbjct: 354 PDDKFDPNALPVLDDITLQDVIGTNITIAGNFTGIQESPFTSICLSNITLSSNSGSPATW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLA---ANSAGKAAVL 161
           +CS+VSG SESV P PC DL+  YS SS A   + S GK+A L
Sbjct: 414 VCSNVSGSSESVFPEPCPDLENTYSYSSSACFSSTSNGKSAAL 456

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_VITVI6.8e-2538.30Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1[more]
BLAST of Cp4.1LG08g05090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN4_CUCSA2.2e-7085.98Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165090 PE=3 SV=1[more]
A0A061ENJ0_THECC2.9e-5163.58Pectin lyase-like superfamily protein OS=Theobroma cacao GN=TCM_021274 PE=3 SV=1[more]
A0A0B0NH99_GOSAR6.6e-5165.43Putative polygalacturonase OS=Gossypium arboreum GN=F383_17527 PE=3 SV=1[more]
A0A0D2RPX8_GOSRA8.6e-5165.43Uncharacterized protein OS=Gossypium raimondii GN=B456_011G194200 PE=3 SV=1[more]
A0A151STQ0_CAJCA2.5e-5063.75Putative polygalacturonase (Fragment) OS=Cajanus cajan GN=KK1_004429 PE=3 SV=1[more]
BLAST of Cp4.1LG08g05090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06770.23.8e-4255.97 Pectin lyase-like superfamily protein[more]
AT3G16850.16.7e-3952.86 Pectin lyase-like superfamily protein[more]
AT5G49215.11.3e-3756.34 Pectin lyase-like superfamily protein[more]
AT4G23820.17.2e-3348.23 Pectin lyase-like superfamily protein[more]
AT5G41870.12.1e-3249.64 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG08g05090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076882|ref|XP_008438913.1|2.8e-7187.20PREDICTED: probable polygalacturonase isoform X1 [Cucumis melo][more]
gi|659076884|ref|XP_008438914.1|2.8e-7187.20PREDICTED: probable polygalacturonase isoform X2 [Cucumis melo][more]
gi|449432886|ref|XP_004134229.1|3.1e-7085.98PREDICTED: probable polygalacturonase isoform X2 [Cucumis sativus][more]
gi|778678970|ref|XP_011651065.1|3.1e-7085.98PREDICTED: probable polygalacturonase isoform X1 [Cucumis sativus][more]
gi|1009163387|ref|XP_015899940.1|1.2e-5367.48PREDICTED: probable polygalacturonase [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0016829 lyase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05090.1Cp4.1LG08g05090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 5..126
score: 9.
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..140
score: 2.99
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 1..128
score: 3.8
NoneNo IPR availablePANTHERPTHR31339FAMILY NOT NAMEDcoord: 1..148
score: 5.5
NoneNo IPR availablePANTHERPTHR31339:SF15PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..148
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05090Cucsa.252790Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g05090CmaCh06G015450Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05090CmoCh14G016400Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05090CmoCh06G015430Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05090Cla021767Watermelon (97103) v1cpewmB845
Cp4.1LG08g05090Csa3G165090Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g05090MELO3C006690Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g05090ClCG05G006310Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g05090CSPI03G14730Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g05090Lsi05G015660Bottle gourd (USVL1VR-Ls)cpelsiB718
Cp4.1LG08g05090MELO3C006690.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g05090CsaV3_3G014940Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g05090Bhi01G000753Wax gourdcpewgoB1110
Cp4.1LG08g05090CsGy3G014860Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g05090Carg23751Silver-seed gourdcarcpeB1321
Cp4.1LG08g05090Carg19645Silver-seed gourdcarcpeB0396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05090Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g05090Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g05090Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g05090Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05090Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g05090Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g05090Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g05090Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g05090Cucumber (Chinese Long) v2cpecuB875
Cp4.1LG08g05090Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g05090Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g05090Watermelon (97103) v1cpewmB853
Cp4.1LG08g05090Melon (DHL92) v3.5.1cpemeB793
Cp4.1LG08g05090Cucumber (Gy14) v2cgybcpeB887
Cp4.1LG08g05090Silver-seed gourdcarcpeB0109
Cp4.1LG08g05090Silver-seed gourdcarcpeB0987