Carg23751 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23751
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pectin lyase-like superfamily protein
Location	Cucurbita_argyrosperma_scaffold_213 : 366457 .. 369526 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGCAGATTTTCTTCACCCGTTTCCTTCTTTTCCTTCTTTTTAGTTTTGGGGTGGATTTGGTTGTTTCTCTCTCTCTCTCTCTCTCTCGGCTGTCGTTTTTACAGCGTATATTGCCCTCGTTTCCTTCCTTTCCCTACAATTTCCTTATGTAAGTTCTTGATTTTGGTTGTGCATTTATATCATTTGCCTCACTTTCCCTTTCGATTCCTCCGTTTGTTTATGTTCTTCCGGTTTCAGCTCCCCTTTGCCTCGCCGTGTTTGCTGCTGGTTTGCCCCTTCTTCATCTCGATTTCTCTTCATTTTGGTCATTGTCGTTCCTGGCTTTGACCAATGAGGATGCTAGTAAGTACGTTTCTTTTATCTGGGTTTTCTTTGTTTTTTTGTTTTACGAATCATTTTATGTCGATTTCTGAAGAACCCCTTTTGTTCTTACCCTTGTTTTTCAATGTCTTTCACCATCTGTTTCATGTCTGTGTTCTTTACAGATGGTCCAGAAACCCTTTTTGACTTTTCCTGATTTGTATCCCTTTCCTTGATGATGTTGATTTTCTCGCAGGTTTTGATTTCCAGATTTGATGTTCTTCTGAATTCCTCTTTGATCTGTTCTTCATCTTGTCGGATTAGTTCTTTTCTTGCGATTTTGGGCGATTTGTTATCTGGGTTTCCACCATTGTTGTCTTTTTAAGCTTCTTTTGTTTCATTCTTTAGGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCCATATTAGATCCAAGGCCACACAGTGTGTCTATCTTGGAGTTTGGGGCTGTTGGTGATGGCAAAACTCTCAACACCATTGCCTTCCAAAACGCCATTTTCTATCTCAAATCCTTCGCTGATAAGGGTGGAGCTCAGCTTTATGTTCCACCGGGAAAATGGCTCACTGGAAGCATTAATCTCACTAGCCACCTTACCCTTTTTCTGGAAAAAGGTGCTACCATTCTTGCCTCTCAGGTATGTTCTTATTCTTGGATGAACATAGTGTTTGATTTTAGGCATTTGTTTTGTGATTATCGATCGTATCTTAAACACAGGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGTGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTTTGTTATTTGTTCGACACGCTTGATTTAGAATCTAGTTTGTGCGTATGCGATTCACTCGTATGAACATGTGTTATTGTCTTGATTTTCGATGTGCTAGGTGATGATGGTGTCATTGATGGTCAGGGTTTGGTTTGGTGGGATTGGTTCACTTCTCATTCCTTAAACTATAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTCGTTTCGAACCTTAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGGTATGTCGTAACGTAGCTACTAGAATTCAGTTTCTTCTGCCTTTGTTTGTTCGGTTCACGTTGTTCGTATTTGTGAGCGAATCTGTATTGAAACATAAGTGTTTCATGTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGGTTTGAAATGCTTTCTCAGCTTCCTCATTGTCATTTGTTCGACTATTAGTGTGGGCTCCTCTGGCCGAATGGCTCGAGCACCATTGAAGAATATCTCCTTTAATCGATCTCTCGCTCTCTCTCTGTCTCTCACGCACACACACCACGTAGTGCTTAGTAGAAGATGCCATCGAGAAAGATATCAAGGGCAGTTTGCTGAATGTCGTTAGCTCGTTTAAGGAAAACAAGTTCTTATGATTCGGGTTTGAGTCTAGAAAAGATGACTCGTTAGACAGCATCATGATTAGAATGATTTATTAGAATGATGATCAAACCCGGACTTAAAATCTAGAAGTACGATGCGATTCATTCATTTTTGCTTGTAATTAATAAGGCGACGACGCCTTTTCTAAATAAAATTTGATTGGTGCTTTCAGATTCTTCTGATCATGTATGCATAGAGGGCTGCAACATTGCCACGGGATATGACGCCATCGTCTTGAAGAGCGGCTGGGATCAGTATGGTATAGCCTATGGTAGACCATCTAAAAACATACACATCAGAAACGTCCACCTTCAGTCGTCTTCAGGTTCGTCCATTGCCTTTGGTAGCGAGATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCAATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGAAGCCTTTGCCATCCAAGGTACAACAATATATATATTTTCAACCCTTGTCTTCTCCAAGTCAAGCAAGATTCTTTCAAATAAAAACCACATGTCTAGATTACTTGTTTTCTTCATTCTCTTAGAATTGCGTTCGTTCGTTCGTTCATGTTTCGGTCTGCAGATTTATTTGTACAGTTCGATTTCTTCATTCACGTGTAAGGAAATTTTTGGTAGTGATTTTTACAGGTCTTTCGGTTTCGTTTGTGTTGCGTTTTCTTTTAAAATTATTCCCTTCACCCTCTCCCCCCCCTCAAGAGCTTGGTGC

mRNA sequence

AAGGCAGATTTTCTTCACCCGTTTCCTTCTTTTCCTTCTTTTTAGTTTTGGGGTGGATTTGGTTGTTTCTCTCTCTCTCTCTCTCTCTCGGCTGTCGTTTTTACAGCGTATATTGCCCTCGTTTCCTTCCTTTCCCTACAATTTCCTTATGTAAGTTCTTGATTTTGGTTGTGCATTTATATCATTTGCCTCACTTTCCCTTTCGATTCCTCCGTTTGTTTATGTTCTTCCGGTTTCAGCTCCCCTTTGCCTCGCCGTGTTTGCTGCTGGTTTGCCCCTTCTTCATCTCGATTTCTCTTCATTTTGGTCATTGTCGTTCCTGGCTTTGACCAATGAGGATGCTAGTAAGTGGCATTGCTGCTGTTGCTACAATTGAGCAATGCTGCGAAGATTATTGGTGATGAGCTCTCCGGACAGTGCAATTCTAAGCCCATATTAGATCCAAGGCCACACAGTGTGTCTATCTTGGAGTTTGGGGCTGTTGGTGATGGCAAAACTCTCAACACCATTGCCTTCCAAAACGCCATTTTCTATCTCAAATCCTTCGCTGATAAGGGTGGAGCTCAGCTTTATGTTCCACCGGGAAAATGGCTCACTGGAAGCATTAATCTCACTAGCCACCTTACCCTTTTTCTGGAAAAAGGTGCTACCATTCTTGCCTCTCAGGACCCGTCCCATTGGGAACTTGTCAATCCGTTACCTTCGTATGGTAGAGGTGTTGAAGTTCCAGGGAAACGATACCGGAGCTTGATAAATGGTTACAATTTACACGATGTTGTAATAACAGGTGATGATGGTGTCATTGATGGTCAGGGTTTGGTTTGGTGGGATTGGTTCACTTCTCATTCCTTAAACTATAGCCGTCCTCACCTCGTGGAATTTGAGGATTCGGAATATGTAGTCGTTTCGAACCTTAGTTTCTTGAATACTCCTGCTTATAATATCCATCCAGTTTACTGCAGTAATGTCTATGTTTTCAACATCTCTGTCTCTGCACCTTCTGAATCTCCCTACACTGTTGGAATAGTCCCAGATTCTTCTGATCATGTATGCATAGAGGGCTGCAACATTGCCACGGGATATGACGCCATCGTCTTGAAGAGCGGCTGGGATCAGTATGGTATAGCCTATGGTAGACCATCTAAAAACATACACATCAGAAACGTCCACCTTCAGTCGTCTTCAGGTTCGTCCATTGCCTTTGGTAGCGAGATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCAATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGAAGCCTTTGCCATCCAAGGTACAACAATATATATATTTTCAACCCTTGTCTTCTCCAAGTCAAGCAAGATTCTTTCAAATAAAAACCACATGTCTAGATTACTTGTTTTCTTCATTCTCTTAGAATTGCGTTCGTTCGTTCGTTCATGTTTCGGTCTGCAGATTTATTTGTACAGTTCGATTTCTTCATTCACGTGTAAGGAAATTTTTGGTAGTGATTTTTACAGGTCTTTCGGTTTCGTTTGTGTTGCGTTTTCTTTTAAAATTATTCCCTTCACCCTCTCCCCCCCCTCAAGAGCTTGGTGC

Coding sequence (CDS)

ATGTCTGGTGGGATATCTAATGTTCTTGTCGAGCACGTGCACTTGTACAACTCGTCTACTGGCATTGAATTCAGAACTACCAAGGGAAGAGGAGGTTACATTAAAGGAATAGTTATATCAGACGTTGAAATGGAAAACATATCCACGGGATTCAGTGCCTCGGGTCATTTCGGGTCACATCCAGACGACGAGTTCGATCCTAACGCACTTCCAATCGTGCAGGACATAACGTTGCAGAATGTTCGAGGCACAAACATTAAAATTGCTGGAAACTTCACTGGGCTACAGGAATCTCCCTTCACTTCAATCTATTTATCCAACATTACCTTTTCAATGAATTCATCTTCTTCCACTTCTTGGATCTGTTCAGATGTTTCTGGGTACTCGGAATCCGTTATCCCGGCGCCCTGTTCTGACCTCGATACTCGATATTCAATTTCTTCATTAGCAGCGAATTCAGCTGGAAAAGCTGCTGTTTTATGA

Protein sequence

MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHPDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL

Homology

[Close]

BLAST of Carg23751 vs. NCBI nr
Match: XP_022939716.1 (probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939725.1 probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939734.1 probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939742.1 probable polygalacturonase isoform X1 [Cucurbita moschata])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH
Sbjct: 296 MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 355

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW
Sbjct: 356 PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 415

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 161
           ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL
Sbjct: 416 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 455

[Close]

BLAST of Carg23751 vs. NCBI nr
Match: XP_022939749.1 (probable polygalacturonase isoform X2 [Cucurbita moschata])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH
Sbjct: 293 MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 352

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW
Sbjct: 353 PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 412

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 161
           ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL
Sbjct: 413 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 452

[Close]

BLAST of Carg23751 vs. NCBI nr
Match: XP_023539517.1 (probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539518.1 probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539519.1 probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH
Sbjct: 296 MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 355

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW
Sbjct: 356 PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 415

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 161
           ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL
Sbjct: 416 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 455

[Close]

BLAST of Carg23751 vs. NCBI nr
Match: XP_023539520.1 (probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 1.4e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH
Sbjct: 293 MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 352

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW
Sbjct: 353 PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 412

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 161
           ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL
Sbjct: 413 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAVL 452

[Close]

BLAST of Carg23751 vs. NCBI nr
Match: XP_022972284.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 5.5e-79
Identity = 157/164 (95.73%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH
Sbjct: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDEFDPNALPIVQDITLQNVRGTNI IAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW
Sbjct: 61  PDDEFDPNALPIVQDITLQNVRGTNINIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           IC DVSGYSESVIP PCSDLDTRYSISSLAA    NSAGKAAVL
Sbjct: 121 ICLDVSGYSESVIPPPCSDLDTRYSISSLAATSLLNSAGKAAVL 164

[Close]

BLAST of Carg23751 vs. TAIR10
Match: AT3G06770.2 (Pectin lyase-like superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-42
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V+V++ H++ S TGI FRTTKGRGGYIK I IS+++M  I T   A+G FGSH
Sbjct: 295 MSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIVANGSFGSH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD++D NALP+V  I L N+ G NI IAG   G++ESPF+S+ LSN++ SM+S SS SW
Sbjct: 355 PDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSW 414

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSAGKAAV 160
            CS V G SESVIP PC +L          A++ G+AAV
Sbjct: 415 QCSYVYGSSESVIPEPCPEL-------KRDADAYGRAAV 446

[Close]

BLAST of Carg23751 vs. TAIR10
Match: AT3G16850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-39
Identity = 74/140 (52.86%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGG+S+V VE +++++S  G+ FRTT+GRGGYI+ I ISDV++ ++ T   A+GH GSH
Sbjct: 292 MSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSH 351

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD+FD +ALP+V  I ++N  G +I +AGN TG+ ESPFTSI L++I   + + S  SW
Sbjct: 352 PDDKFDRDALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLADI--HLQTRSEESW 411

Query: 121 ICSDVSGYSESVIPAPCSDL 141
           ICS+VSG+S+ V P PC +L
Sbjct: 412 ICSNVSGFSDDVSPEPCQEL 429

[Close]

BLAST of Carg23751 vs. TAIR10
Match: AT5G49215.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 80/142 (56.34%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGIS+V V   H++NS +GI FRTT GRGGYIK I IS++ M N+ T F A+G FG+H
Sbjct: 295 MSGGISDVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFLANGSFGTH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSS--T 120
           PD  FD NA P+V  I L ++ G NI  AG F G +ESPFTSI LSNI+ S+ +S+S   
Sbjct: 355 PDSGFDENAYPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSIKNSASPAD 414

Query: 121 SWICSDVSGYSESVIPAPCSDL 141
           SW CS V G SE V+P PC +L
Sbjct: 415 SWQCSYVDGSSEFVVPEPCLEL 436

[Close]

BLAST of Carg23751 vs. TAIR10
Match: AT4G23820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 137.5 bits (345), Expect = 7.2e-33
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 2   SGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHP 61
           SGGI N++ EH+ L N   G+  +T  GRGGYIK I ISDV ++    G   +G  G HP
Sbjct: 293 SGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHP 352

Query: 62  DDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWI 121
           D+ ++PNALP+V+ I ++NV G N++ AG+  GL+ SPFT I LS I    + +S  +W 
Sbjct: 353 DENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTWK 412

Query: 122 CSDVSGYSESVIPAPCSDLDT 143
           CSDVSG S  V P PCS+L T
Sbjct: 413 CSDVSGTSLKVSPWPCSELRT 433

[Close]

BLAST of Carg23751 vs. TAIR10
Match: AT5G41870.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 0


Query: 2   SGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHP 61
           SGGI NV VE++ LYNS  GI  +T  GRGG I+GI IS V +E + TG   SG  G HP
Sbjct: 298 SGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDHP 357

Query: 62  DDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWI 121
           DD+F+ +ALPIV+ IT++NV G  ++ AG   GL++SPFT++  SN+T +  +  S  W 
Sbjct: 358 DDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLT-GTKRSPIWK 417

Query: 122 CSDVSGYSESVIPAPCSDL 141
           CSDV G ++ V P PC +L
Sbjct: 418 CSDVVGAADKVNPTPCPEL 435

[Close]

BLAST of Carg23751 vs. Swiss-Prot
Match: sp|A7PZL3|PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.9e-25
Identity = 54/141 (38.30%), Postives = 82/141 (58.16%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGI +V  E +   NS +GI  +T  GRGGY+K I +  + M+ +   F  +G++GSH
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNS-SSSTS 120
            D+ +DP A P++Q I  +++   N+ +A    G+   PFT I +SN+T  + + +    
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVP 434

Query: 121 WICSDVSGYSESVIPAPCSDL 141
           W C+DV G S  V P PCS L
Sbjct: 435 WTCTDVEGISSGVTPTPCSTL 455

[Close]

BLAST of Carg23751 vs. Swiss-Prot
Match: sp|Q02096|PGLR_PERAE (Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 29/122 (23.77%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 5   ISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSHPDDE 64
           +S VLV+  +L++++ G+  +T +G  G  K I   ++ M N++       ++    D  
Sbjct: 317 VSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPC 376

Query: 65  FDPNALPIVQDITLQNVRGTNI-KIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSWICS 124
            +  +   V ++   N+RGT+  ++A  F   + SP     + NI    N    T+  CS
Sbjct: 377 PEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCS 436

Query: 125 DV 126
           ++
Sbjct: 437 NI 438

[Close]

BLAST of Carg23751 vs. TrEMBL
Match: tr|A0A1S3AX49|A0A1S3AX49_CUCME (probable polygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483871 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-71
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GIEFRTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 295 MSGGISNVLVEHVQLNNSFIGIEFRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 354

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 355 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 414

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 415 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 458

[Close]

BLAST of Carg23751 vs. TrEMBL
Match: tr|A0A1S3AXL3|A0A1S3AXL3_CUCME (probable polygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483871 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-71
Identity = 143/164 (87.20%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GIEFRTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 294 MSGGISNVLVEHVQLNNSFIGIEFRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 354 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 414 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 457

[Close]

BLAST of Carg23751 vs. TrEMBL
Match: tr|A0A0A0LAN4|A0A0A0LAN4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165090 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 4.0e-70
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVEHV L NS  GI+ RTTKGRGGYIKGIV+SDVEMENIST FSASGHFGSH
Sbjct: 294 MSGGISNVLVEHVQLNNSFIGIQIRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSH 353

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDDE+DPNALPIVQDITLQNVRGTNIKIAGNF+G+QESPFTSIYLSNITFS+NSSSSTSW
Sbjct: 354 PDDEYDPNALPIVQDITLQNVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSW 413

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAA----NSAGKAAVL 161
           ICSDVSG+SESVIP PCSDL T YSISS AA    NS GK AVL
Sbjct: 414 ICSDVSGFSESVIPPPCSDLSTPYSISSSAASPLVNSTGKTAVL 457

[Close]

BLAST of Carg23751 vs. TrEMBL
Match: tr|A0A2N9HGF5|A0A2N9HGF5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38596 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.6e-53
Identity = 113/164 (68.90%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNV VEHVHLYNS +GIEFRTTKGRGGYIK I+ISDVEMENI    SA+G  GSH
Sbjct: 312 MSGGISNVHVEHVHLYNSFSGIEFRTTKGRGGYIKRIIISDVEMENIYLALSATGECGSH 371

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSSTSW 120
           PDD++DP ALP++  ITLQ+V GTNI IAG+FTG+QESPFTSI LSN++ S+NS S TSW
Sbjct: 372 PDDKYDPTALPVLDHITLQDVIGTNITIAGHFTGIQESPFTSICLSNVSLSINSGSPTSW 431

Query: 121 ICSDVSGYSESVIPAPCSDLDTRYSISSLAANSA----GKAAVL 161
           +CS+V G+SESV P PC DL + YS SS A  S     GKAA L
Sbjct: 432 VCSNVFGFSESVFPEPCPDLKSSYSNSSSACFSLLDLNGKAAAL 475

[Close]

BLAST of Carg23751 vs. TrEMBL
Match: tr|A0A2P6QYQ0|A0A2P6QYQ0_ROSCH (Putative galacturan 1,4-alpha-galacturonidase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0423821 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-51
Identity = 109/154 (70.78%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MSGGISNVLVEHVHLYNSSTGIEFRTTKGRGGYIKGIVISDVEMENISTGFSASGHFGSH 60
           MSGGISNVLVE VHLYNS  G++FRTTKGRGGYIK IVISDV+MENI   F ASG FGSH
Sbjct: 291 MSGGISNVLVEQVHLYNSLGGVQFRTTKGRGGYIKDIVISDVKMENIDVAFGASGQFGSH 350

Query: 61  PDDEFDPNALPIVQDITLQNVRGTNIKIAGNFTGLQESPFTSIYLSNITFSMNSSSST-S 120
           PDD FDPNALP++  I LQ+V GTNI IAG F+G++ESPFTS  LSNI+ S+NS SST S
Sbjct: 351 PDDNFDPNALPVLDHINLQDVIGTNITIAGKFSGIKESPFTSFCLSNISLSINSGSSTNS 410

Query: 121 WICSDVSGYSESVIPAPCSDLDTRYSISSLAANS 154
           W+CS+VSG SESV P PCS L + YS SS A  S
Sbjct: 411 WVCSNVSGSSESVFPEPCSALKSSYSNSSSACFS 444

The following BLAST results are available for this feature:

BLAST of Carg23751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939716.1	1.4e-82	100.00	probable polygalacturonase isoform X1 [Cucurbita moschata] >XP_022939725.1 proba...	[more]
XP_022939749.1	1.4e-82	100.00	probable polygalacturonase isoform X2 [Cucurbita moschata]	[more]
XP_023539517.1	1.4e-82	100.00	probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023539518...	[more]
XP_023539520.1	1.4e-82	100.00	probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022972284.1	5.5e-79	95.73	probable polygalacturonase [Cucurbita maxima]	[more]

BLAST of Carg23751 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06770.2	3.8e-42	55.97	Pectin lyase-like superfamily protein	[more]
AT3G16850.1	6.7e-39	52.86	Pectin lyase-like superfamily protein	[more]
AT5G49215.1	1.3e-37	56.34	Pectin lyase-like superfamily protein	[more]
AT4G23820.1	7.2e-33	48.23	Pectin lyase-like superfamily protein	[more]
AT5G41870.1	2.1e-32	49.64	Pectin lyase-like superfamily protein	[more]

BLAST of Carg23751 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7PZL3\|PGLR_VITVI	6.9e-25	38.30	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
sp\|Q02096\|PGLR_PERAE	2.7e-05	23.77	Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1	[more]

BLAST of Carg23751 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AX49\|A0A1S3AX49_CUCME	3.6e-71	87.20	probable polygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483871 PE...	[more]
tr\|A0A1S3AXL3\|A0A1S3AXL3_CUCME	3.6e-71	87.20	probable polygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483871 PE...	[more]
tr\|A0A0A0LAN4\|A0A0A0LAN4_CUCSA	4.0e-70	85.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165090 PE=3 SV=1	[more]
tr\|A0A2N9HGF5\|A0A2N9HGF5_FAGSY	2.6e-53	68.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38596 PE=3 SV=1	[more]
tr\|A0A2P6QYQ0\|A0A2P6QYQ0_ROSCH	2.4e-51	70.78	Putative galacturan 1,4-alpha-galacturonidase OS=Rosa chinensis OX=74649 GN=Rchi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR000743	Glyco_hydro_28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23751-RA	Carg23751-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..126 e-value: 9.4E-9 score: 34.7
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..157 e-value: 3.1E-25 score: 90.9
None	No IPR available	PANTHER	PTHR31339:SF15	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..150
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..150
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 2..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23751	CmaCh15G009830	Cucurbita maxima (Rimu)	carcmaB1305
Carg23751	Cp4.1LG03g11580	Cucurbita pepo (Zucchini)	carcpeB1320
Carg23751	Cp4.1LG08g05090	Cucurbita pepo (Zucchini)	carcpeB1321
Carg23751	Cla97C05G087890	Watermelon (97103) v2	carwmbB1003
Carg23751	Bhi01G000753	Wax gourd	carwgoB1105

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23751	Carg19645	Silver-seed gourd	carcarB318

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23751	Cucumber (Gy14) v2	carcgybB0939
Carg23751	Cucumber (Gy14) v1	carcgyB1072
Carg23751	Cucurbita maxima (Rimu)	carcmaB1304
Carg23751	Cucurbita maxima (Rimu)	carcmaB1307
Carg23751	Cucurbita moschata (Rifu)	carcmoB1273
Carg23751	Cucurbita moschata (Rifu)	carcmoB1276
Carg23751	Wild cucumber (PI 183967)	carcpiB0989
Carg23751	Cucumber (Chinese Long) v2	carcuB0967
Carg23751	Cucumber (Chinese Long) v3	carcucB0995
Carg23751	Bottle gourd (USVL1VR-Ls)	carlsiB869
Carg23751	Melon (DHL92) v3.5.1	carmeB0934
Carg23751	Melon (DHL92) v3.6.1	carmedB0940
Carg23751	Watermelon (Charleston Gray)	carwcgB0929
Carg23751	Watermelon (97103) v1	carwmB0953