Cp4.1LG08g04340 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g04340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDead box ATP-dependent RNA helicase, putative
LocationCp4.1LG08 : 1618064 .. 1626793 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATAAATGAGCATCTTCCGTCGACGTGTTGCCGACGAAAACAAAGAGGAAGAAGAAAAGGTCTGTTTGTCCAAATTGAAAGGAACCAACCAATAAATCTCGTTTACTTCTCCACTAGGAAGCTTCCATCAATGGCGGACTTCAATTACGCCTTCATCTCTCTGGTTCTTCTTCTTCCTCTTGCACTACTCATTTTCCTATACCTAATTGTTCGTCCTCGCTCCGTTAACATTCCTTTGAAGAATCGCCATGTCTTCATTACCGGCGGATCGAGCGGAATCGGGCTTGCGTTGGCCCACCAGGCCGCATCGGAGGGCGCGCGAGTCTCCATTCTTGCGCGATCTCTCAAGAAGCTCGAGGAAGCGAAGGACGCAATCAGACTCTCCACTGGTATTGATGTGGCGGTCTTCGCTGCCGATGTTCGAGATTACGATGCTATTTCCAAGGCTGTAGATGAAGCAGGGCCGATTGACGTTCTTGTTGTGAATCAAGGCGTGTTCGTACCTCAGGAGCTGGCAGAGCAAGATATGGATGAGGTGAAATTCATGTTAGATGTTAATTTGTTGGGCGCATTTCACATGATTAAGGCTGCCCTGCCTACGATGAAGAATAGAGTAGACCGTCGACCCGCCTCGATCGCTCTCATGTCTTCTCAGGCCGGTCAGGTAGTTGTGTTTCTATCTGCTTTCTACTTTATTGGGCAATTGCATTGATTATTTTTTTAATATTCAAGTGAGACGCTTTATCATGTTGAAGGGTCAATTAATGAGCTTTCATGGTGGTATGAGGTATGCGAGTAAATTATGTGCGCACACATAAAGGAGGGCGAATTGAGGCGCATAGATTGTTCACTGCTAGTATATAGGGTGTGCTTGGTCATAGTCATAGTGTTTAATCACCTCAAGTCTTTTTGATAGTATAAAAATACTTTGAATGGTTTGAGAGGAAGCATTTGATTAAGTACAAATAGAAAAAGTGTTGCCAAGTGCCAAACTACTTCTCTAGAGTGAACTTCTTCGATTGTTAGGGTCAATTTAATGACATTGATAACGTGCAGACACTCGCTGAGTTGAAAATTCAGTAGAAGTGGTAATCCTTTACTCACGAATTCCTATTGTAAATATGAGTAGGTGGGTGTTTATGGCTACACGGCGTATTCAGCTAGTAAGTTTGGGCTTCGTGGTTTGGCAGAAGCCTTGCAACAGGAGGTTATAGGAGATAACATACATATTTCTCTTATATTCCCTCCAGACACTGACACTCCTGGATTAGTAGAAGGTATGTATAAAGCAAGACCTGGTTTACCTTATTGTATTGTTCTGCTAGTCCTCAACCAGGGTTTCAATATTTACTCAGTGGGTTGGATTTTTTAGCTCAGTTTTCAGCCCATTGGTTTCGGTTAGGATATGAGGTAAATGTTTGAAAGATAAACTAATTAGGCTATTACACGGCTAGGATTTATTTGAGCTAGTAGCCCTCTTTTTTGGATATCTCAGGTTATATGCTATTTTGAAGGTTGCATTGACAGAAATCCTTCAATTTATTATATAGGATCTTTTTTTAGTTTGTTTCTCCTTTTAAAAGTTACATATCCTTAATCGCAGAGGAAAAGAGAAGGCCTGAATTGACCAATATCATTGCCGCTGGAGGAGGCAGGATGAAAGCTGAGTTAGTCGCCAAAAAAGCTTTGAATGGCATTAAATCTGGTAGCTTTATAATTCCCTGCAACTTTGAAGGAGCATTATTGTCCGTAGCAACTGCTGGCTTATCTCCTCAGAGATCTTTCTTGATGGCATTCCTTGAAGTTGTTACTGCTGGGATAATAAGGATTGTGGGCTTGTGTTTTCAATGGGTTTGGTATGATAGTATTCAAAAATGGCATGCACAGAAAAAAAGTAAGTATTCATTCAAGTGATGAAACTATGAGCTTGTTCAATCCCTTGATTAATGTAAGTACTATAATTGTTTCTTTTATGGCACTCATTATTGCGCAAGAGATCTGGTTAAAATGCAGTCAAACTGGTATAAAAAACTAATCAGATTTTGAATTACACAGTTATGCTATCACAGGTTCTTGTTTTTTTTTTTTTTTTTAAGATCACAATCTTCTTTGTCGTCTAATTTCTAGCATATGACGATGCAAGTGGCTTTGTTTTCCTGATTTCTCGTCAGCTGCCTTTCTAAACTCACTCCATTTTGAATGTCATATTACATCAGTATACTAATTATCATATCTTTTGCCTTAAATTCTTATACCCTCAATGTCTGTTACAACGTGTCTAAGGCTGATCTATGCAGTGAATTAACCAGTTACCTACGTTCAACACGTGAACTTGTGCCTAATGCCGACAAGTGACAAATATCTGGATAATCCTGGAACTTGACACTGTCTTTTCAGTTTGCTCATTGATAGAAAATGGCTCGACTTGCATATATTGCATTTGTTTTTGCATTTCTCTATCTGACTGTAACTTCAAGCCATTTGTTGAGTAACCTTATCTATGTCCTATTGCCAGGAACCTAGAAGATACGGCTGGTTTTTTCTCGACAATTTCTTTCATTCATGGTTATTAGCTCCAAGTTCTCTCCTCTGAATTCTTAAACAACTGGAAGTAAAGGCTCGAGCCCGCTCTGATAAGTCGAACACTAGTTCAATATTTGGTAGGCAAAAGGTCAGGGATGACTGATTCAGTAGCAGTTCTCTCTCTTCCCTCAGTTTGACAGTAAGGCTTTCACGGTTGTTTACTCTTTTTCTCTCATGTTTTTTTAAGGTAGATCAGCAGCTGTAGGAACTGGATTTTCATCCCAACTTGTTAGGGTATCTTTTCTTACTGTATGCCATAGGGGGGAGTTGAATTTGATCATGTGAAGGAAGTTTGGACCTTTATGAGCTTTTATCTTACTACAAACGGCAGAATAAGAGATTTTTCTTCGCAAATTAGTTGTGTTATTTGACAATTAGGCGTACGCCAACGCCACTGCAAAACCATATCTAGTCTATTACAATTCTTGCTTGCTTCTTTTAATTTGACAGGAAGCAGCTGGAGATGGAGGGATTTCAATTCTAGATAAGATTCTCTGTATTGACTGTTATTTCTAATATCAATTTCATAGTTAAGTGTTAAATGAAAAGTGGGGACTTGGGAAATAAGTCTTCTAAATTCAGCCCCTATATGAACATGGGCTGAAATCTAATCTCATTCAACCATGATAACTTGACCTTTGTAAAGGCAAGTTAGGATTATGTTGTGTACCTTTACGAAGGAAATGCCATTGTTTTTTTTACAGGAAAGCATGCATCAGAGCCCGTCAGTTATGTCTGATAGCCCGTACTTGGGGATCGACAAGTTTCTCTCTAGTATTGTCTATACGTGCAGGTAGCCTTATTGACTAAGCTCATGTTACGTCAATTATGTCGATTTCAACTAGCCAAATCGATTTTTCGGTTCGGTTTGCTCACTTCTAGTTCATAAACTAAGTTTAAAATGAAACTTTCGATGATAAAATACATTATCGAAATTAAGTACAAGAGTGTACTTGAAATTTGTCACATATACCACTATTTTACCGGTTGCAATTATATCCTTTACCATAAATTTTTTAGTCAAAATTTAATGAAAAATATATTTTTTTTTACGGAATTAAAATTTTCAAAAATCATGTATTTTAAGAATTAATAATCAATTCAATTAACCTATCAACAAATTCAAAAATAAAATCATTTTTATAGTTTTTTTTATTAAAAAAATTTAAAACATTGGTATGAAGTAAATGTTTCTATAAACTTAATTTTGAAAATAGCAAATAAAAAAATGTAATTCATTAAGTCAAAACCAAATCATATGAATAAAAATCAATTTATTATTATTATTATTATTTTTTTTTTTTTTTTGTAAAAAAAAAAGTTAAAAAATGTGATAATTTACCCAAAATGTTACCTTATCCAATACCCTTCTGAACTTATTTGAGACGGTTGGGTTCCACAGTGCCCCGCCGCTCGCAGAAGCAAGACGGCGGTTGCTTCACCACCGGCGCCGGAAACTCTCCATTACGACCCGACTCCCCATTTCTCTTACACCCTCATCTTCTTCATCTTCTTCATCTCCTCTTTCCTCCTTAATAACCCATCCTGTATTGCGTAGGCGCGGCATTCCATTTCCAATGGCCGCAACGCTTCTTCCGTCTACCAAAATTCCTCCCCCTTGGCTGCCCGTCTCATCTGAACGCCGCTATCCAATTTATTTACCAAACCTTATCAATAGCAATGGACCCATATGCTCCACCCCCAAATTTAGGCCTCCAAAAGCATTTATGAGCTCATCTTCTTTAAACAATGCCGTCGATTCTAATTTCGAGGCTTCCACTCTCCGCGAGATCTGTAATGGATATGTTCCCGATCATATATTGGACAGGTAAGTATCCATATTACCTCCATATCTTGTGGGTTCCTTCTTAGTTTATCATTTCTAACAATATCTCTTCTGGGGTGTTTTCTTTTCCCTTAATTTTCTTCTCTAAAATGATGTAGAGCTGAGGAAATTGGATTTGTCGCCCCAACTGGTGTGCAGAGGCAAGCTCTTCCAGTTCTGTTTTCTGGTCGGGATTGCGTGCTTCATGCGCAGGTCAAATCTATGTATTTCAAGGAAAATTCCTGCAGAAAGTGGATGCTTAGTATTGTTTGTTTGTGTAAATTCTGTATATGGTTCTTTGCTTACTCTTATCCTTCTAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTAATATTTTCTGTAATCAACGCTCAAAAATCAGCTGTGCAAGCACTGATTGTAGTACCCACCCGGGAGCTTGGAATTCAAGTAAGATTGGACTTTGTATCTTCCACTAATTTCATTTGTACTTATCTTTCATTCTGTAGTTCTGAAATCTGTTTTCTATTGCTGTTCTGAATGTGGGGGCGGGGTGTTTGGTTGATGCTTCTTACATGTTGATGGTAATGTTGTATTTGACCTGGTGGAATGGATGTCAGGTTACTAAAGTTGCTAGGATGTTAGCTGCAAAGCCTGCAACGGCGGATGAAGTTGGGCAGAAATCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACATGGTTGAAGGTGCTGCATTTGTCTCTTTTCTTCATGCATAGTTAATACTAAATCTCTGGTGGAGAAGTTTATTTTCATAAGTAGAAGTGTTATGGCTAGATGGTTTGCAAAAATTTGAATTACTTGTTGAGAACATATGTTGTCTTGGCTTCTAATTGCATCATCGTCGGGTTTCATTTCGAATTTCTTCAGTTTGACACATGACCTTTGTAACGGACCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTCCTCTCAAGACTTTAAAACGTGTTTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGATATCACAATCCACCCCTCTTCAGAGCCCAACGTCCTCGCTGGCACTCGTTCCTTTCTACAATCGATGTGGGACCCTCACCAAATCTACCCCTTTCAAGGCCCAACGTCCTNCCCCCCCCCCCCCCCCTTGGGGATCAGCCTCCTCGCTGGCACATTGTTCGGTGTCTGGCTCTGATACCATTTGTAACGGTCCAAGCCCACCGCTACCAGATATTGTCCTCTTTAAGCTTTCCCTTTTGAGTTTCCCCTCAAAACATTAAAACGCGTCTGCTAGAGAAAGGTTTCCACACCCTTATAAAGGGTGTTTCATTCTCCTCCCCCATTCTCCTCCCCCAACCAATGTGGGATATCATAACCTTATATTGTTTTTTTCCTTTTCTCTTCACTTTCTTGGCTTGTGGTTAATAGTAAAGAAGTTTTCATCTAGATGGTAAGTTTGAGATATTAAAATTTTCAGGCAGATCCCCCTTCTATACTGGTGGCAACAGTAGGAAGCTTGTGTCAAATGGTTGAGAGGCGATTTCTTGATCTTGCCTCACTAAGGGTGCTGGTAATTGACGAGGTACTTGCACAAAAAAAGTTATTTTCAGTAAGCTTTTGGGTCATACTTTCATGACAAATCACGTAATTGGAAGGTCATGTAGCTATAAACTGCTGATGAAGTAAGCTCGTTCGAAACGTTTATTTCAAGGAATTGACGTTTTTTTTCCGCTCGTTTTCCAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCTCTGAAGAAAATCTTGACATCATATTCTATGTTCAGTAATCGTCAGACTGTTTTTGCAAGTGCATCAATTCCCCAGCACAGGCATTTTCTTCAGGAATGTATACAACAGAAGTGGACAAAGGTGTGTATCTGGGTTTCTTTTTGGTTACTTCCAATGTGTGATGCAATTCAGCCATTGGTTTTATCTGCTTTTTAGAACTTTCCCTCTCCTTGTCTTGCAGAATAATGTAATCCATGTTCATATTAACGCAGTTCAGCCCATGCCATCGTGTCTACTCCATAGATTTGTGGTAAGAGATTTTATTGCTCATTCAGAAGTAATTAGCCTCAGCCATCTCACTGGATATAGACTTTCTTCTTTCTAATCATTTTGAGATGTAACTTGCTTAAATATTACCTTTTTCTTGACAGATGTGTGACAAGAACAAAAAACACCAAACCTTCCTGAGTGTACTACTGACAGATAAACCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGGTTCGTGTTGATTGCCTTAAAAGTGAGATAAATAAGTACAATATTCAAACTGCTATTGTAACAACCCAAGCCTGTCGCTAGCAAATATTGTCCTCTTTGGTGTTTCCGTTTCGGGTTTTGTCTCAAGGTTTTTAAAACGCGTCTTCTAAGGAGAGGTTTCTACACCCTTGTAAGGAATGCTTCGTTCCCCTATCCAACCGATGTGGGATCTCACAATCCAGCCTCCTTGGGAGCTCATTATCCTTGCTGGTACACCGCCCGGTGTCTGACTTTGATACCATTTGTAAGAGCCCAAGCCCACCGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGGGTTTCCCTTCAAGGTTTTTAAAACGCGTATTCTAGGGAGATGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCATTGGGAGCCCAGCATCCTTGTTGGTACACCGCCCGGTGTCTGACTTTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCCTTGGGTTTTCCCTTCCGGGCTTCCCTCAAGGTTTTTAAAACGCATCTTCTAGGGAGAGGTTTCCACACCCTTATAAGGAAAACTTCGTTTCCCTCTCCAACCAATGTGGGATCTCACAGCTATCTTCGCTTAAAGCTTTCAGATTGTTCATGGTTTACTATGCCATATCATATTTGCTACAAATCGTCAATGAATCGAGGATCTTTTTTTCTTATGGGCTGTTTTTATAATGTGGTTCCAAATATCATCTTCTATCGCCCTTGAAAGATTAAAATCGAGAAAACGTTTAATCGCAAATCATATTAAACTATAAGCATGTCTGTAGCTACATATCAATGCCCATCATAGGTTCATATTTTTTAGTCTTGAACTCTGGATGTGAGGCAAATCTAGTTCTAGAAAGCCAATGCAATTTATTTGATCCTGTTACATTGGATTATCTTCTCTGCTCAATTTACTGAGCTCTTATTTTCAGTCAGAGAGATCAAAGAAGGCTGGAAAGATTCCACCAGCAACCTTGATGATCGATTTCTTAAAGACTTCATATGATGGTTGTTCTGATGTCGTCCTTCTCGACGAAGACGTAAATTTCAATTCACGAGCAGCTTCTCTATCGGTAAGCTTAGTATGCAATCTTTTTCCAACCATTAACTGAGCGCGGTGTTAGAACTGCAGTAGGATCATTTAACTGGGATGTGATATCTGATGATTCTGATCTGATATTCTAGCTAACTGTTTGAATGAGCATGTGTTCTGAACCTTTATATTATCTTCGTTTTTCATACCGATAGAGGTTAAGCATATTCTCCTTTCTTTCGCTCTAAAGCAATTATGATCGGAGAGAATTTACACTCACAGATTTGTAGGAAACGGTTCATTGTTGATCTCGTTTACTCTTTACATAACTATATATATATATCATCACTTTTCGTCCATTGGGTCAGTCCAAAGCACGACATTGTATATTGAGAAAAAACGAACTACGAATATCTCAATATTTGTTGCATAAGGAGAGAAAATGGAAAAGGAGAGTGAAACCCAATAGATGAATAAGCTTGTATTCAAAATCTCAGTATTTAATGTTGACTTGTTCTTGATTGTTTTGGAATGCAGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACTTAGTGGCCAGGGGAATCGACTTACCCGAGACGACTCATATATACAACTTTGATCTACCTCGAACTGCCATCGACTATCTTCATCGAGCTGGACGAACAGGTAGGAAACCGTTTTCCGAGGAGAAATGTATGGTTACTAATCTTATAACATCAGTAGAGAGATTTGTTCTGCAAAAGTTTGAAAATGAACTACTGTTTACCTGTGATGAACTGGTTGTTTAGATTGTGAATTTCTTCAACCCTCAACATATATATGATGCTGACCTGAGTTGATATTTCATATAGTGATCTT

mRNA sequence

TTCATAAATGAGCATCTTCCGTCGACGTGTTGCCGACGAAAACAAAGAGGAAGAAGAAAAGGTCTGTTTGTCCAAATTGAAAGGAACCAACCAATAAATCTCGTTTACTTCTCCACTAGGAAGCTTCCATCAATGGCGGACTTCAATTACGCCTTCATCTCTCTGGTTCTTCTTCTTCCTCTTGCACTACTCATTTTCCTATACCTAATTGTTCGTCCTCGCTCCGTTAACATTCCTTTGAAGAATCGCCATGTCTTCATTACCGGCGGATCGAGCGGAATCGGGCTTGCGTTGGCCCACCAGGCCGCATCGGAGGGCGCGCGAGTCTCCATTCTTGCGCGATCTCTCAAGAAGCTCGAGGAAGCGAAGGACGCAATCAGACTCTCCACTGGTATTGATGTGGCGGTCTTCGCTGCCGATGTTCGAGATTACGATGCTATTTCCAAGGCTGTAGATGAAGCAGGGCCGATTGACGTTCTTGTTGTGAATCAAGGCGTGTTCGTACCTCAGGAGCTGGCAGAGCAAGATATGGATGAGGTGAAATTCATGTTAGATGTTAATTTGTTGGGCGCATTTCACATGATTAAGGCTGCCCTGCCTACGATGAAGAATAGAGTAGACCGTCGACCCGCCTCGATCGCTCTCATGTCTTCTCAGGCCGAGGAAAAGAGAAGGCCTGAATTGACCAATATCATTGCCGCTGGAGGAGGCAGGATGAAAGCTGAGTTAGTCGCCAAAAAAGCTTTGAATGGCATTAAATCTGGTAGCTTTATAATTCCCTGCAACTTTGAAGGAGCATTATTGTCCGTAGCAACTGCTGGCTTATCTCCTCAGAGATCTTTCTTGATGGCATTCCTTGAAGTTGTTACTGCTGGGATAATAAGGATTGTGGGCTTGTGTTTTCAATGGGTTTGGTATGATAGTATTCAAAAATGGCATGCACAGAAAAAAAGTAGATCAGCAGCTGTAGGAACTGGATTTTCATCCCAACTTGTTAGGGCGTACGCCAACGCCACTGCAAAACCATATCTAGAAAGCATGCATCAGAGCCCGTCAGTTATGTCTGATAGCCCGTACTTGGGGATCGACAAGTTTCTCTCTAGTATTGTCTATACGTGCAGTGCCCCGCCGCTCGCAGAAGCAAGACGGCGGTTGCTTCACCACCGGCGCCGGAAACTCTCCATTACGACCCGACTCCCCATTTCTCTTACACCCTCATCTTCTTCATCTTCTTCATCTCCTCTTTCCTCCTTAATAACCCATCCTGTATTGCGTAGGCGCGGCATTCCATTTCCAATGGCCGCAACGCTTCTTCCGTCTACCAAAATTCCTCCCCCTTGGCTGCCCGTCTCATCTGAACGCCGCTATCCAATTTATTTACCAAACCTTATCAATAGCAATGGACCCATATGCTCCACCCCCAAATTTAGGCCTCCAAAAGCATTTATGAGCTCATCTTCTTTAAACAATGCCGTCGATTCTAATTTCGAGGCTTCCACTCTCCGCGAGATCTGTAATGGATATGTTCCCGATCATATATTGGACAGAGCTGAGGAAATTGGATTTGTCGCCCCAACTGGTGTGCAGAGGCAAGCTCTTCCAGTTCTGTTTTCTGGTCGGGATTGCGTGCTTCATGCGCAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTAATATTTTCTGTAATCAACGCTCAAAAATCAGCTGTGCAAGCACTGATTGTAGTACCCACCCGGGAGCTTGGAATTCAAGTTACTAAAGTTGCTAGGATGTTAGCTGCAAAGCCTGCAACGGCGGATGAAGTTGGGCAGAAATCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACATGGTTGAAGGCAGATCCCCCTTCTATACTGGTGGCAACAGTAGGAAGCTTGTGTCAAATGGTTGAGAGGCGATTTCTTGATCTTGCCTCACTAAGGGTGCTGGTAATTGACGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCTCTGAAGAAAATCTTGACATCATATTCTATGTTCAGTAATCGTCAGACTGTTTTTGCAAGTGCATCAATTCCCCAGCACAGGCATTTTCTTCAGGAATGTATACAACAGAAGTGGACAAAGAATAATGTAATCCATGTTCATATTAACGCAGTTCAGCCCATGCCATCGTGTCTACTCCATAGATTTGTGATGTGTGACAAGAACAAAAAACACCAAACCTTCCTGAGTGTACTACTGACAGATAAACCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAGATCAAAGAAGGCTGGAAAGATTCCACCAGCAACCTTGATGATCGATTTCTTAAAGACTTCATATGATGGTTGTTCTGATGTCGTCCTTCTCGACGAAGACGTAAATTTCAATTCACGAGCAGCTTCTCTATCGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACTTAGTGGCCAGGGGAATCGACTTACCCGAGACGACTCATATATACAACTTTGATCTACCTCGAACTGCCATCGACTATCTTCATCGAGCTGGACGAACAGGTAGGAAACCGTTTTCCGAGGAGAAATGTATGGTTACTAATCTTATAACATCAGTAGAGAGATTTGTTCTGCAAAAGTTTGAAAATGAACTACTGTTTACCTGTGATGAACTGGTTGTTTAGATTGTGAATTTCTTCAACCCTCAACATATATATGATGCTGACCTGAGTTGATATTTCATATAGTGATCTT

Coding sequence (CDS)

TTCATAAATGAGCATCTTCCGTCGACGTGTTGCCGACGAAAACAAAGAGGAAGAAGAAAAGGTCTGTTTGTCCAAATTGAAAGGAACCAACCAATAAATCTCGTTTACTTCTCCACTAGGAAGCTTCCATCAATGGCGGACTTCAATTACGCCTTCATCTCTCTGGTTCTTCTTCTTCCTCTTGCACTACTCATTTTCCTATACCTAATTGTTCGTCCTCGCTCCGTTAACATTCCTTTGAAGAATCGCCATGTCTTCATTACCGGCGGATCGAGCGGAATCGGGCTTGCGTTGGCCCACCAGGCCGCATCGGAGGGCGCGCGAGTCTCCATTCTTGCGCGATCTCTCAAGAAGCTCGAGGAAGCGAAGGACGCAATCAGACTCTCCACTGGTATTGATGTGGCGGTCTTCGCTGCCGATGTTCGAGATTACGATGCTATTTCCAAGGCTGTAGATGAAGCAGGGCCGATTGACGTTCTTGTTGTGAATCAAGGCGTGTTCGTACCTCAGGAGCTGGCAGAGCAAGATATGGATGAGGTGAAATTCATGTTAGATGTTAATTTGTTGGGCGCATTTCACATGATTAAGGCTGCCCTGCCTACGATGAAGAATAGAGTAGACCGTCGACCCGCCTCGATCGCTCTCATGTCTTCTCAGGCCGAGGAAAAGAGAAGGCCTGAATTGACCAATATCATTGCCGCTGGAGGAGGCAGGATGAAAGCTGAGTTAGTCGCCAAAAAAGCTTTGAATGGCATTAAATCTGGTAGCTTTATAATTCCCTGCAACTTTGAAGGAGCATTATTGTCCGTAGCAACTGCTGGCTTATCTCCTCAGAGATCTTTCTTGATGGCATTCCTTGAAGTTGTTACTGCTGGGATAATAAGGATTGTGGGCTTGTGTTTTCAATGGGTTTGGTATGATAGTATTCAAAAATGGCATGCACAGAAAAAAAGTAGATCAGCAGCTGTAGGAACTGGATTTTCATCCCAACTTGTTAGGGCGTACGCCAACGCCACTGCAAAACCATATCTAGAAAGCATGCATCAGAGCCCGTCAGTTATGTCTGATAGCCCGTACTTGGGGATCGACAAGTTTCTCTCTAGTATTGTCTATACGTGCAGTGCCCCGCCGCTCGCAGAAGCAAGACGGCGGTTGCTTCACCACCGGCGCCGGAAACTCTCCATTACGACCCGACTCCCCATTTCTCTTACACCCTCATCTTCTTCATCTTCTTCATCTCCTCTTTCCTCCTTAATAACCCATCCTGTATTGCGTAGGCGCGGCATTCCATTTCCAATGGCCGCAACGCTTCTTCCGTCTACCAAAATTCCTCCCCCTTGGCTGCCCGTCTCATCTGAACGCCGCTATCCAATTTATTTACCAAACCTTATCAATAGCAATGGACCCATATGCTCCACCCCCAAATTTAGGCCTCCAAAAGCATTTATGAGCTCATCTTCTTTAAACAATGCCGTCGATTCTAATTTCGAGGCTTCCACTCTCCGCGAGATCTGTAATGGATATGTTCCCGATCATATATTGGACAGAGCTGAGGAAATTGGATTTGTCGCCCCAACTGGTGTGCAGAGGCAAGCTCTTCCAGTTCTGTTTTCTGGTCGGGATTGCGTGCTTCATGCGCAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTAATATTTTCTGTAATCAACGCTCAAAAATCAGCTGTGCAAGCACTGATTGTAGTACCCACCCGGGAGCTTGGAATTCAAGTTACTAAAGTTGCTAGGATGTTAGCTGCAAAGCCTGCAACGGCGGATGAAGTTGGGCAGAAATCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACATGGTTGAAGGCAGATCCCCCTTCTATACTGGTGGCAACAGTAGGAAGCTTGTGTCAAATGGTTGAGAGGCGATTTCTTGATCTTGCCTCACTAAGGGTGCTGGTAATTGACGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCTCTGAAGAAAATCTTGACATCATATTCTATGTTCAGTAATCGTCAGACTGTTTTTGCAAGTGCATCAATTCCCCAGCACAGGCATTTTCTTCAGGAATGTATACAACAGAAGTGGACAAAGAATAATGTAATCCATGTTCATATTAACGCAGTTCAGCCCATGCCATCGTGTCTACTCCATAGATTTGTGATGTGTGACAAGAACAAAAAACACCAAACCTTCCTGAGTGTACTACTGACAGATAAACCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAGATCAAAGAAGGCTGGAAAGATTCCACCAGCAACCTTGATGATCGATTTCTTAAAGACTTCATATGATGGTTGTTCTGATGTCGTCCTTCTCGACGAAGACGTAAATTTCAATTCACGAGCAGCTTCTCTATCGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACTTAGTGGCCAGGGGAATCGACTTACCCGAGACGACTCATATATACAACTTTGATCTACCTCGAACTGCCATCGACTATCTTCATCGAGCTGGACGAACAGGTAGGAAACCGTTTTCCGAGGAGAAATGTATGGTTACTAATCTTATAACATCAGTAGAGAGATTTGTTCTGCAAAAGTTTGAAAATGAACTACTGTTTACCTGTGATGAACTGGTTGTTTAG

Protein sequence

FINEHLPSTCCRRKQRGRRKGLFVQIERNQPINLVYFSTRKLPSMADFNYAFISLVLLLPLALLIFLYLIVRPRSVNIPLKNRHVFITGGSSGIGLALAHQAASEGARVSILARSLKKLEEAKDAIRLSTGIDVAVFAADVRDYDAISKAVDEAGPIDVLVVNQGVFVPQELAEQDMDEVKFMLDVNLLGAFHMIKAALPTMKNRVDRRPASIALMSSQAEEKRRPELTNIIAAGGGRMKAELVAKKALNGIKSGSFIIPCNFEGALLSVATAGLSPQRSFLMAFLEVVTAGIIRIVGLCFQWVWYDSIQKWHAQKKSRSAAVGTGFSSQLVRAYANATAKPYLESMHQSPSVMSDSPYLGIDKFLSSIVYTCSAPPLAEARRRLLHHRRRKLSITTRLPISLTPSSSSSSSSPLSSLITHPVLRRRGIPFPMAATLLPSTKIPPPWLPVSSERRYPIYLPNLINSNGPICSTPKFRPPKAFMSSSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV
Homology
[Close]
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match: RH58_ARATH (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana GN=RH58 PE=2 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 2.6e-166
Identity = 283/419 (67.54%), Postives = 351/419 (83.77%), Query Frame = 1 

Query: 484 SSSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCV 543
           SS   +N+V       TLR+IC G+VP+HIL R EEIGFV PT +QR+ALP LF+GRDC+
Sbjct: 58  SSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCI 117

Query: 544 LHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEV 603
           LHAQTGSGKTLTYLLLIFS+IN Q+S+VQA+IVVPTRELG+QVTKVARMLAAK     E+
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAK----SEI 177

Query: 604 GQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEV 663
             K   VMALLDGG LRRHK+WLKA+PP+ILVATV SLC M+E+    + S+RVLV+DEV
Sbjct: 178 DVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEV 237

Query: 664 DFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHI 723
           DF+F SSKQV S++K+LTS+S    RQTVFASASIPQH+HF+ +CIQQKWTK +V+HVH+
Sbjct: 238 DFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHV 297

Query: 724 NAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATL 783
           +A+ PMP CLLHRFVMC+K  KHQ  L++L +D P+SAIIFV EQSE+SKKAG  P  TL
Sbjct: 298 SAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTL 357

Query: 784 MIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHI 843
           +++FLKTSY G  +++LL+ D+NFNSRAASL+E+RQGG +L+V+TD+ ARGIDLPETTHI
Sbjct: 358 LMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 417

Query: 844 YNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           +NFDLP+T  DYLHRAGR GRKPFS+ KC+V NLITS ERFVLQ++ENEL+F+C+E+++
Sbjct: 418 FNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYENELMFSCEEMML 472

[Close]
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match: RH58_ORYSJ (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0970600 PE=2 SV=2)

HSP 1 Score: 528.9 bits (1361), Expect = 1.1e-148
Identity = 259/405 (63.95%), Postives = 329/405 (81.23%), Query Frame = 1 

Query: 498 ASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLTYL 557
           A+TLRE+C G VP+H+L RAEE+G+V PT VQ Q+LPVL SG+DC+LHAQTGSGKTL YL
Sbjct: 37  AATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYL 96

Query: 558 LLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGG 617
           L +FS I+  +S+VQAL+VVPTRELG+QVTKVAR+LAAK  T          VMALLDGG
Sbjct: 97  LSVFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAAKACT----------VMALLDGG 156

Query: 618 LLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFSSSKQVSSLK 677
           +LRR K+W+KA+PP+I+VATV SLCQM+E+R   L S+RVLVIDEVDF+F SSKQVSSL+
Sbjct: 157 MLRRQKSWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLR 216

Query: 678 KILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQPMPSCLLHRF 737
           KILTSYS  S+RQT+FASASIPQH  F+ +C+Q KWTK +V+HVH+N VQPMPS L H++
Sbjct: 217 KILTSYSAASSRQTIFASASIPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKY 276

Query: 738 VMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSD 797
            +C K ++    LS+L  D P+S IIFV+EQSE+SKKAG  P  T++++FL+T+Y G  +
Sbjct: 277 AICSKKERLHVLLSLLEKDAPKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLE 336

Query: 798 VVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLH 857
           V+LL+ED+NFN+RA S +EV+ G  +L+V+TD+ +RG DLP+T+HIYNFDLP+TAIDYLH
Sbjct: 337 VLLLEEDMNFNARATSFTEVK-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLH 396

Query: 858 RAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           RAGRTGR+PFS+  C VT LIT  E FVLQ+F+NEL F C+EL V
Sbjct: 397 RAGRTGREPFSKLACSVTTLITEDEHFVLQRFQNELKFHCEELPV 430

[Close]
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match: TC10A_ARATH (3-dehydrosphinganine reductase TSC10A OS=Arabidopsis thaliana GN=TSC10A PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-55
Identity = 115/166 (69.28%), Postives = 144/166 (86.75%), Query Frame = 1 

Query: 55  LVLLLPLALLIFLYLIVRPRSVNIPLKNRHVFITGGSSGIGLALAHQAASEGARVSILAR 114
           L+ ++PL+LL  L LIVRPR + IP+K+RH FITGGSSGIGLALAH+AASEGARVSILAR
Sbjct: 12  LIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILAR 71

Query: 115 SLKKLEEAKDAIRLSTGIDVAVFAADVRDYDAISKAVDEAGPIDVLVVNQGVFVPQELAE 174
           S  KLEEAK +I+L+TG++VA F+ADVRDYDA+SKA+DE+GPIDVL+VNQGVF  +EL +
Sbjct: 72  SGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVK 131

Query: 175 QDMDEVKFMLDVNLLGAFHMIKAALPTMKNRVDRRPASIALMSSQA 221
              ++VKF +DVNL+G+F++IKAALP MK R DR PASI+L+SSQA
Sbjct: 132 HSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQA 177

[Close]
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match: TC10B_ARATH (3-dehydrosphinganine reductase TSC10B OS=Arabidopsis thaliana GN=TSC10B PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.6e-54
Identity = 115/171 (67.25%), Postives = 144/171 (84.21%), Query Frame = 1 

Query: 50  YAFISLVLLLPLALLIFLYLIVRPRSVNIPLKNRHVFITGGSSGIGLALAHQAASEGARV 109
           ++     +L  ++LLI L  IVRPRSV IP+K RHVFITGGSSGIGLALAH+A SEGA+V
Sbjct: 5   FSLFLFFILFIVSLLIILSFIVRPRSVTIPIKFRHVFITGGSSGIGLALAHRAVSEGAKV 64

Query: 110 SILARSLKKLEEAKDAIRLSTGIDVAVFAADVRDYDAISKAVDEAGPIDVLVVNQGVFVP 169
           SILARS +KL EAK +I+L+TG++VA F+ADVRDYDA+SKA+DE+GPIDVL+VNQGVF+ 
Sbjct: 65  SILARSTEKLAEAKRSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFIG 124

Query: 170 QELAEQDMDEVKFMLDVNLLGAFHMIKAALPTMKNRVDRRPASIALMSSQA 221
           +EL +Q  +EVKFM+DVNL G+F++IKAALP MK R  R PASI+L+SSQA
Sbjct: 125 KELEKQSPEEVKFMIDVNLTGSFNVIKAALPAMKAREGRGPASISLVSSQA 175

[Close]
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match: CRHR_SYNY3 (RNA helicase CrhR OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crhR PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-33
Identity = 112/376 (29.79%), Postives = 187/376 (49.73%), Query Frame = 1 

Query: 519 EIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVP 578
           +IGF APT +Q +A+P+L SGRD +  +QTG+GKT  + L +   I+ +   +QALI+ P
Sbjct: 24  DIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRIDPEGD-LQALILTP 83

Query: 579 TRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPPSILVATV 638
           TREL  QV +         A  D   ++   ++ +  G  + R    L+     I+V T 
Sbjct: 84  TRELAQQVAE---------AMKDFSHERRLFILNVYGGQSIERQIRSLERGV-QIVVGTP 143

Query: 639 GSLCQMVERRFLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASI 698
           G +  +++R+ L L +++ +V+DE D M S    +  +K IL        RQT   SA++
Sbjct: 144 GRVIDLIDRKKLKLETIQWVVLDEADEMLSMGF-IDDVKTILRKTP--PTRQTACFSATM 203

Query: 699 PQHRHFLQECIQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKN-KKHQTFLSVLLTDK 758
           P+    ++E + Q    N+   V +   Q  P+ +  +     +   K +    +L  + 
Sbjct: 204 PRE---IKELVNQ--FLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMED 263

Query: 759 PQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEV 818
           P+SAIIFV  +   +    ++  A   +D     Y G         +++ + R   +   
Sbjct: 264 PESAIIFVRTKQTAADLTSRLQEAGHSVD----EYHG---------NLSQSQRERLVHRF 323

Query: 819 RQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNL 878
           R G   L+VATD+ ARG+D+   +H+ NFDLP  A  Y+HR GRTGR   + +      L
Sbjct: 324 RDGKIKLVVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGR---AGKTGKAIAL 364

Query: 879 ITSVERFVLQKFENEL 894
           +  ++R +L+  EN L
Sbjct: 384 VEPIDRRLLRSIENRL 364

[Close]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match: A0A0A0L5M9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149880 PE=4 SV=1)

HSP 1 Score: 788.1 bits (2034), Expect = 1.1e-224
Identity = 398/474 (83.97%), Postives = 432/474 (91.14%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSERRYPIYL----PNLINSNGPICSTPKFRPPKAFMSSSSL 492
           MAAT LP+TK PPPWL +SSER +P++L    PN IN+NGPI ST K RP +A +SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 493 NNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQT 552
            N  +SNFEASTLREICNG+VP+HIL R EEIGFVAPT VQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 553 GSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSY 612
           GSGKTLTYLLLIFSVINA+KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  SY
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEDGLNSY 180

Query: 613 VVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFS 672
           VVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVER+FLDL SL VLVIDEVDFMFS
Sbjct: 181 VVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFS 240

Query: 673 SSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQP 732
           SSKQVSSLKK+LTSYS FSNRQT+FASASIPQHRHFL +CIQQKWTK+ V+H+HIN+ QP
Sbjct: 241 SSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQP 300

Query: 733 MPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFL 792
           MPSCLLHRFV C+KNKKHQT L++LLTD PQSAIIFVSEQSE+SKKAGKIPP TLMIDFL
Sbjct: 301 MPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFL 360

Query: 793 KTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDL 852
           K SY GCSDV+LL+EDVN+N RA+SLSE+RQGGSYLIVATD+VARGIDLPETTHIYNFDL
Sbjct: 361 KASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDL 420

Query: 853 PRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           PR AIDYLHRAGRTGRKPFSEEKC+VTNLITS ERFVLQKFENELLF C+E+VV
Sbjct: 421 PRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match: M5XD89_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005191mg PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 1.7e-175
Identity = 315/478 (65.90%), Postives = 391/478 (81.80%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSER----RYPI----YLPNLINSNGPICSTPKFRPPKAFMS 492
           MA   L +T++ P  LP  S++     +P     + P L +SNG + +     P +A ++
Sbjct: 1   MATATLSATQLLPLSLPKPSQKPRHAHFPFQSLNHSPRLFSSNGFVSNCS---PIQALLN 60

Query: 493 SSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVL 552
           S+ +     S  E  TLR+IC  +VPDH+L + EE+GFV PT VQRQALP LFSGRDC+L
Sbjct: 61  STPITTEAGSEPEPFTLRQICQSHVPDHVLCKMEELGFVVPTPVQRQALPTLFSGRDCIL 120

Query: 553 HAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVG 612
           HAQTGSGKTLTYLLL+FS++NA++SAVQALIVVPTRELG+QVTKVARMLA KP    E+ 
Sbjct: 121 HAQTGSGKTLTYLLLVFSIVNARRSAVQALIVVPTRELGMQVTKVARMLATKPKEG-ELE 180

Query: 613 QKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVD 672
           QKS  VMALLDGG+L RHK+WLKA+PP+I+VAT+GSLCQM+E+  + L ++RVLVIDEVD
Sbjct: 181 QKSCTVMALLDGGMLMRHKSWLKAEPPTIVVATIGSLCQMLEKHMIKLEAMRVLVIDEVD 240

Query: 673 FMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHIN 732
           FMFSS KQVSSL+K+LTSYS  + RQTVFASASIPQH+ FL +CIQQKWTKN+ IHVH+N
Sbjct: 241 FMFSS-KQVSSLRKLLTSYSSINTRQTVFASASIPQHKIFLDKCIQQKWTKNDTIHVHVN 300

Query: 733 AVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLM 792
            V+PMPSCL HRFV+C KN++H+T LS+L +D PQSAI+FV EQSE+SKKAG    ATL+
Sbjct: 301 PVEPMPSCLHHRFVICLKNRRHETLLSLLQSDAPQSAIVFVGEQSEKSKKAGNASSATLL 360

Query: 793 IDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIY 852
           I+FLK SY+G SD++LL+ED+NFNSRAASLSEVRQ GSYL+V+TD+ ARG+DLPETTHIY
Sbjct: 361 INFLKASYEGYSDILLLEEDMNFNSRAASLSEVRQAGSYLLVSTDIAARGLDLPETTHIY 420

Query: 853 NFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           N+DLPRTAIDYLHRAGRTGRKPFS++KC VT++I S ERFVL+K+ENEL+F C+EL+V
Sbjct: 421 NYDLPRTAIDYLHRAGRTGRKPFSDKKCSVTSIIISKERFVLEKYENELMFNCEELIV 473

[Close]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match: B9HV92_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s10230g PE=4 SV=2)

HSP 1 Score: 620.2 bits (1598), Expect = 4.1e-174
Identity = 305/432 (70.60%), Postives = 364/432 (84.26%), Query Frame = 1 

Query: 472 STPKFRPPKAFMSSSSLNNAVDS---NFEASTLREICNGYVPDHILDRAEEIGFVAPTGV 531
           S   FRP KA ++S SL    D      EA TLREIC G VP+H+L R EE+G+  PT V
Sbjct: 45  SRSSFRPLKAILNSPSLTKVADDAKEKGEALTLREICLGRVPEHLLRRVEEVGYAVPTDV 104

Query: 532 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTK 591
           Q+QALPVLFSGRDC+LHAQTGSGKTL YLLLIFSVIN Q+SAVQALIVVPTRELGIQVTK
Sbjct: 105 QKQALPVLFSGRDCILHAQTGSGKTLAYLLLIFSVINTQRSAVQALIVVPTRELGIQVTK 164

Query: 592 VARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERR 651
           VARMLAA P T ++  QKS  VMALLDGG+LRRHK+WLKA+PP+I+VAT+ SLCQM+E+ 
Sbjct: 165 VARMLAATP-TENDAEQKSCTVMALLDGGMLRRHKSWLKAEPPTIVVATIASLCQMLEKH 224

Query: 652 FLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQEC 711
            L L S++VLVIDEVDFMF+SSKQVSSL+K+LTSYS  ++RQTVFASASIPQH  FL +C
Sbjct: 225 LLKLESMQVLVIDEVDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHNRFLYDC 284

Query: 712 IQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQ 771
           IQQKWTK +V+HVH+N ++PMP+CL HRFV+C K ++HQT LS+L +D P+S IIFV EQ
Sbjct: 285 IQQKWTKRDVVHVHVNPIEPMPTCLQHRFVICSKKQRHQTLLSLLQSDAPKSGIIFVGEQ 344

Query: 772 SERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVAT 831
           SE+SKKAG  PP   ++DFLKTSY  CS+++LL+ED+NFNSRAASLSEVRQGG YL+VAT
Sbjct: 345 SEKSKKAGNGPPTIDLVDFLKTSYGDCSEILLLEEDMNFNSRAASLSEVRQGGGYLLVAT 404

Query: 832 DLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQK 891
           D+ ARG+DLPE THIYNF+LPRTA+DYLHRAGRTGRKPFS+EKC VT++I   ERFVLQ+
Sbjct: 405 DIAARGVDLPEITHIYNFNLPRTAVDYLHRAGRTGRKPFSDEKCNVTSIIMPEERFVLQR 464

Query: 892 FENELLFTCDEL 901
           +ENEL+F C+EL
Sbjct: 465 YENELMFNCEEL 475

[Close]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match: A0A067KVF9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02130 PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 4.5e-173
Identity = 306/447 (68.46%), Postives = 373/447 (83.45%), Query Frame = 1 

Query: 460 LPNLINSNGP-ICSTPKFRPPKAFMSSS---SLNNAVDSNFEASTLREICNGYVPDHILD 519
           L +L NS    I STP     +A + SS   S   A     +ASTLR IC G+V DH+LD
Sbjct: 40  LSSLFNSRDRLILSTPNLSHLQAVLDSSTPLSKEEADTKQDDASTLRGICRGHVSDHMLD 99

Query: 520 RAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALI 579
           RAEE+G+V PT VQRQALPVLFS RDC+LHAQTGSGKTL YLLLI+SVINAQ+SAVQALI
Sbjct: 100 RAEEVGYVVPTDVQRQALPVLFSRRDCILHAQTGSGKTLAYLLLIYSVINAQRSAVQALI 159

Query: 580 VVPTRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPPSILV 639
           VVPTRELG+QVTKVARMLA K             VMALLDGG+L+RHK+WLKA+PP I+V
Sbjct: 160 VVPTRELGMQVTKVARMLATKAMDV--------TVMALLDGGMLKRHKSWLKAEPPKIVV 219

Query: 640 ATVGSLCQMVERRFLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFAS 699
           AT+ SLCQM++++ + L +L+VLVIDEVDFMF+SSKQVSSL+K+LTSYS   NRQT+FAS
Sbjct: 220 ATIASLCQMLQKQTIKLEALQVLVIDEVDFMFNSSKQVSSLRKLLTSYSSCKNRQTIFAS 279

Query: 700 ASIPQHRHFLQECIQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLT 759
           ASIPQHR F+ +CIQQKWTK NV+HVH+N ++PMPS LLHRF++C KN++HQ  LS+L +
Sbjct: 280 ASIPQHRRFMHDCIQQKWTKGNVVHVHVNPIEPMPSRLLHRFLICSKNQRHQMLLSLLHS 339

Query: 760 DKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRAASLS 819
           D P+SAIIFV EQSE+SKKAG  PP TL+IDFLK+SYDGCSD++LL+ED+NFNSRAASLS
Sbjct: 340 DAPKSAIIFVGEQSEKSKKAGNAPPTTLLIDFLKSSYDGCSDLLLLEEDMNFNSRAASLS 399

Query: 820 EVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVT 879
           E++QGG Y++VATD+ ARG+DLP+TTHIYNFDLP++A+DYLHR+GRTGRKPFS+EKC VT
Sbjct: 400 ELKQGGGYVLVATDIAARGVDLPQTTHIYNFDLPKSAVDYLHRSGRTGRKPFSDEKCYVT 459

Query: 880 NLITSVERFVLQKFENELLFTCDELVV 903
           N+I S ERFVLQ++ENEL+F C+ELV+
Sbjct: 460 NIIISEERFVLQRYENELMFNCEELVL 478

[Close]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match: W9R5M0_9ROSA (DEAD-box ATP-dependent RNA helicase 58 OS=Morus notabilis GN=L484_007340 PE=4 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 7.7e-173
Identity = 314/470 (66.81%), Postives = 377/470 (80.21%), Query Frame = 1 

Query: 435 ATLLPSTKIPPPWLPVSSERRYPIYLPNLINSNGPICSTPKFRPPKAFMSS----SSLNN 494
           ATL P  ++    LP SS      +LP    +  P   +   R P A  S     SS  +
Sbjct: 2   ATLSPPPQLLSLKLPYSSH-----HLPFRFRNPNPSLVSSIPRSPLAIRSVPNLLSSAAD 61

Query: 495 AVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGS 554
           AV     A+TLR +C G VP+H++   EE+G++ PT VQRQALP+LFSGRDCVLHAQTGS
Sbjct: 62  AVPDEQRAATLRRLCEGLVPEHVV---EEVGYIEPTDVQRQALPILFSGRDCVLHAQTGS 121

Query: 555 GKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSYVV 614
           GKTLTYLLLIFSV+N Q+SAVQALIVVPTRELG+QVTKVAR LAAKP  +D + QKS  V
Sbjct: 122 GKTLTYLLLIFSVVNTQRSAVQALIVVPTRELGMQVTKVARTLAAKPMESD-LEQKSCSV 181

Query: 615 MALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFSSS 674
           MALLDGG LRRHK+WLKA+PP+++VAT+GSLCQ ++++ L L S+RVLVIDEVDF+F+SS
Sbjct: 182 MALLDGGTLRRHKSWLKAEPPTVVVATIGSLCQQLDKQILTLESMRVLVIDEVDFIFNSS 241

Query: 675 KQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQPMP 734
           KQVSSL+K+LTSYS  SNRQTVFASASIPQHR FL EC+QQKWTK+NV+HVH+N ++PMP
Sbjct: 242 KQVSSLRKLLTSYSTISNRQTVFASASIPQHRRFLHECVQQKWTKSNVVHVHVNPIEPMP 301

Query: 735 SCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKT 794
           SCL H FV+C KNK+ QT LS+L +D P S IIFV EQSE+SKKAG  PP T+++DFLK 
Sbjct: 302 SCLHHNFVICGKNKRLQTLLSLLHSDAPHSGIIFVGEQSEKSKKAGNAPPTTILMDFLKD 361

Query: 795 SYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPR 854
           SY G S+++LL+ED+N NSR ASLSEVRQGG YL+V+TDL ARG+DLPETTHIYNFDLPR
Sbjct: 362 SYKGGSEILLLEEDMNINSRTASLSEVRQGGGYLLVSTDLAARGVDLPETTHIYNFDLPR 421

Query: 855 TAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDEL 901
           TA DYLHRAGRTGRKPFS E+C VTN+ITS ERFVLQ++ENEL+F C+EL
Sbjct: 422 TATDYLHRAGRTGRKPFSNEECTVTNIITSEERFVLQRYENELMFNCEEL 462

[Close]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match: AT5G19210.2 (AT5G19210.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 587.4 bits (1513), Expect = 1.5e-167
Identity = 283/419 (67.54%), Postives = 351/419 (83.77%), Query Frame = 1 

Query: 484 SSSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCV 543
           SS   +N+V       TLR+IC G+VP+HIL R EEIGFV PT +QR+ALP LF+GRDC+
Sbjct: 58  SSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCI 117

Query: 544 LHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEV 603
           LHAQTGSGKTLTYLLLIFS+IN Q+S+VQA+IVVPTRELG+QVTKVARMLAAK     E+
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAK----SEI 177

Query: 604 GQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEV 663
             K   VMALLDGG LRRHK+WLKA+PP+ILVATV SLC M+E+    + S+RVLV+DEV
Sbjct: 178 DVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEV 237

Query: 664 DFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHI 723
           DF+F SSKQV S++K+LTS+S    RQTVFASASIPQH+HF+ +CIQQKWTK +V+HVH+
Sbjct: 238 DFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHV 297

Query: 724 NAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATL 783
           +A+ PMP CLLHRFVMC+K  KHQ  L++L +D P+SAIIFV EQSE+SKKAG  P  TL
Sbjct: 298 SAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTL 357

Query: 784 MIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHI 843
           +++FLKTSY G  +++LL+ D+NFNSRAASL+E+RQGG +L+V+TD+ ARGIDLPETTHI
Sbjct: 358 LMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 417

Query: 844 YNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           +NFDLP+T  DYLHRAGR GRKPFS+ KC+V NLITS ERFVLQ++ENEL+F+C+E+++
Sbjct: 418 FNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYENELMFSCEEMML 472

[Close]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match: AT3G06060.1 (AT3G06060.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 6.2e-57
Identity = 115/166 (69.28%), Postives = 144/166 (86.75%), Query Frame = 1 

Query: 55  LVLLLPLALLIFLYLIVRPRSVNIPLKNRHVFITGGSSGIGLALAHQAASEGARVSILAR 114
           L+ ++PL+LL  L LIVRPR + IP+K+RH FITGGSSGIGLALAH+AASEGARVSILAR
Sbjct: 12  LIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILAR 71

Query: 115 SLKKLEEAKDAIRLSTGIDVAVFAADVRDYDAISKAVDEAGPIDVLVVNQGVFVPQELAE 174
           S  KLEEAK +I+L+TG++VA F+ADVRDYDA+SKA+DE+GPIDVL+VNQGVF  +EL +
Sbjct: 72  SGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVK 131

Query: 175 QDMDEVKFMLDVNLLGAFHMIKAALPTMKNRVDRRPASIALMSSQA 221
              ++VKF +DVNL+G+F++IKAALP MK R DR PASI+L+SSQA
Sbjct: 132 HSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQA 177

[Close]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match: AT5G19200.1 (AT5G19200.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 2.0e-55
Identity = 115/171 (67.25%), Postives = 144/171 (84.21%), Query Frame = 1 

Query: 50  YAFISLVLLLPLALLIFLYLIVRPRSVNIPLKNRHVFITGGSSGIGLALAHQAASEGARV 109
           ++     +L  ++LLI L  IVRPRSV IP+K RHVFITGGSSGIGLALAH+A SEGA+V
Sbjct: 5   FSLFLFFILFIVSLLIILSFIVRPRSVTIPIKFRHVFITGGSSGIGLALAHRAVSEGAKV 64

Query: 110 SILARSLKKLEEAKDAIRLSTGIDVAVFAADVRDYDAISKAVDEAGPIDVLVVNQGVFVP 169
           SILARS +KL EAK +I+L+TG++VA F+ADVRDYDA+SKA+DE+GPIDVL+VNQGVF+ 
Sbjct: 65  SILARSTEKLAEAKRSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFIG 124

Query: 170 QELAEQDMDEVKFMLDVNLLGAFHMIKAALPTMKNRVDRRPASIALMSSQA 221
           +EL +Q  +EVKFM+DVNL G+F++IKAALP MK R  R PASI+L+SSQA
Sbjct: 125 KELEKQSPEEVKFMIDVNLTGSFNVIKAALPAMKAREGRGPASISLVSSQA 175

[Close]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match: AT1G12770.1 (AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-31
Identity = 127/441 (28.80%), Postives = 192/441 (43.54%), Query Frame = 1 

Query: 496 FEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLT 555
           F A +  E+    +PD +LD  E  GF  PT VQ  A+P +  G D V+ + TGSGKTL 
Sbjct: 107 FSAKSFEELG---LPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLA 166

Query: 556 YLLLIFSVI-------------NAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADE 615
           YLL I S I             N +++ +QA+IV P+RELG+Q+ +    L         
Sbjct: 167 YLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGP------ 226

Query: 616 VGQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDE 675
                 +V  L+ G    R +  LK + P+I+V T G + ++ +   L     R LV+DE
Sbjct: 227 --VHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDE 286

Query: 676 VDFMFSSSKQVSSLKKILTSYSMFS------------NRQTVFASASIPQHRHFLQECIQ 735
           VD + S + +   + +IL      S            NRQT+  SA++P    F      
Sbjct: 287 VDELLSFNFR-EDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVP----FSVIRAA 346

Query: 736 QKWTKNNVIHVHINAVQPM----PSCLLHRFVMCDKNKKHQ---TFLSVLLTDKPQSAII 795
           + W+   V+ V  N V P+    PS  +            Q   T  S+    K    I 
Sbjct: 347 KSWSHEPVL-VQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCIS 406

Query: 796 FVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNS-----------RAA 855
               + +  ++      A  +I F+  S     DVV   E    NS           R+ 
Sbjct: 407 KHQHKVDTLRRCVHALDAQSVIAFMNHSRQ-LKDVVYKLEARGMNSAEMHGDLGKLGRST 466

Query: 856 SLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKC 894
            L + + G   ++V  +L ARG+D+ E   + N +LP  A+ Y HRAGRTGR      K 
Sbjct: 467 VLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGR---LGRKG 526

[Close]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match: AT1G55150.1 (AT1G55150.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-29
Identity = 105/360 (29.17%), Postives = 167/360 (46.39%), Query Frame = 1 

Query: 510 PDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKS 569
           PD++L+  ++ GF  PT +Q Q  P+   GRD +  A+TGSGKTL+YLL     +NAQ  
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166

Query: 570 AVQ-----ALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKT 629
                    L++ PTREL +Q+ +           A + G  S +    + GG+ +  + 
Sbjct: 167 LAHGDGPIVLVLAPTRELAVQIQQ----------EASKFGSSSKIKTTCIYGGVPKGPQV 226

Query: 630 WLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYS 689
                   I++AT G L  M+E    +L  +  LV+DE D M         ++KI++   
Sbjct: 227 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD-PQIRKIVS--H 286

Query: 690 MFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKNK 749
           +  +RQT++ SA+ P+      E + +K+   N   V I +     +  + + V      
Sbjct: 287 IRPDRQTLYWSATWPKE----VEQLSKKFL-YNPYKVIIGSSDLKANRAIRQIVDVISES 346

Query: 750 KHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDED 809
           +    L  LL D    + I V    +  K   +I     M  +   S  G         D
Sbjct: 347 QKYNKLVKLLEDIMDGSRILVF--LDTKKGCDQITRQLRMDGWPALSIHG---------D 406

Query: 810 VNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGR 865
            +   R   LSE R G S ++ ATD+ ARG+D+ +  ++ N+D P +  DY+HR GRTGR
Sbjct: 407 KSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437

[Close]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match: gi|659076477|ref|XP_008438702.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 790.4 bits (2040), Expect = 3.3e-225
Identity = 401/474 (84.60%), Postives = 429/474 (90.51%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSERRYPIYL----PNLINSNGPICSTPKFRPPKAFMSSSSL 492
           MAAT LP+TK PPPWL +SSER +P++L    PN IN+NGPI ST KFRP +A MSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 493 NNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQT 552
            N  +SNFE STLREICNG VP+HIL R EEIGFVAPT VQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 553 GSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSY 612
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  SY
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEDGLNSY 180

Query: 613 VVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFS 672
           VVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVER+FLDL SL VLVIDEVDFMFS
Sbjct: 181 VVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFS 240

Query: 673 SSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQP 732
           SSKQVSSLKK+LTSYS FSNRQT+FASASIPQHRHFLQ+CIQQKWTKN VIH+HIN+ QP
Sbjct: 241 SSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQP 300

Query: 733 MPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFL 792
           MPSCLLHRFV C+KNKKHQT L++LLTD PQSAIIFVSEQSE+SKKAGKIPP TLMIDFL
Sbjct: 301 MPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFL 360

Query: 793 KTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDL 852
           K SY GCSDV+LL+EDVN+N RA+SLSEVRQGG YLIVATD+VARGIDLPETTHIYNFDL
Sbjct: 361 KASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDL 420

Query: 853 PRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           PR AIDYLHRAGRTGRKPFSEEKC+VTNLITS ERFVLQKFENELLF C+E+ V
Sbjct: 421 PRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 473

[Close]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match: gi|778678542|ref|XP_011650984.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 788.1 bits (2034), Expect = 1.6e-224
Identity = 398/474 (83.97%), Postives = 432/474 (91.14%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSERRYPIYL----PNLINSNGPICSTPKFRPPKAFMSSSSL 492
           MAAT LP+TK PPPWL +SSER +P++L    PN IN+NGPI ST K RP +A +SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 493 NNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQT 552
            N  +SNFEASTLREICNG+VP+HIL R EEIGFVAPT VQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 553 GSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSY 612
           GSGKTLTYLLLIFSVINA+KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  SY
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEDGLNSY 180

Query: 613 VVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVDFMFS 672
           VVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVER+FLDL SL VLVIDEVDFMFS
Sbjct: 181 VVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFS 240

Query: 673 SSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHINAVQP 732
           SSKQVSSLKK+LTSYS FSNRQT+FASASIPQHRHFL +CIQQKWTK+ V+H+HIN+ QP
Sbjct: 241 SSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQP 300

Query: 733 MPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFL 792
           MPSCLLHRFV C+KNKKHQT L++LLTD PQSAIIFVSEQSE+SKKAGKIPP TLMIDFL
Sbjct: 301 MPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFL 360

Query: 793 KTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDL 852
           K SY GCSDV+LL+EDVN+N RA+SLSE+RQGGSYLIVATD+VARGIDLPETTHIYNFDL
Sbjct: 361 KASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDL 420

Query: 853 PRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           PR AIDYLHRAGRTGRKPFSEEKC+VTNLITS ERFVLQKFENELLF C+E+VV
Sbjct: 421 PRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match: gi|645232665|ref|XP_008222971.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Prunus mume])

HSP 1 Score: 631.3 bits (1627), Expect = 2.5e-177
Identity = 318/478 (66.53%), Postives = 393/478 (82.22%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSER----RYPIYL----PNLINSNGPICSTPKFRPPKAFMS 492
           MA   L +T++ P  LP  S++     +P       P L +SNG + +     P +A ++
Sbjct: 1   MATATLSATQLLPLSLPKPSQKPRHANFPFQSLNPSPRLFSSNGFVSNCS---PIQALLN 60

Query: 493 SSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVL 552
           S+ +     S  E  TLR+IC  +VPDH+L R EE+GFV PT VQRQALP LFSGRDC+L
Sbjct: 61  STPITTEAGSEPEPFTLRKICQSHVPDHVLCRMEELGFVVPTPVQRQALPTLFSGRDCIL 120

Query: 553 HAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVG 612
           HAQTGSGKTLTYLLL+FS++NA++SAVQALIVVPTRELG+QVTKVARMLA KP   DE+ 
Sbjct: 121 HAQTGSGKTLTYLLLVFSIVNARRSAVQALIVVPTRELGMQVTKVARMLATKPME-DELE 180

Query: 613 QKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVD 672
           QKS  VMALLDGG+L RHK+WLKA+PP+I+VAT+GSLCQM+E+  + L ++RVLVIDEVD
Sbjct: 181 QKSCTVMALLDGGMLMRHKSWLKAEPPTIVVATIGSLCQMLEKHMIKLEAMRVLVIDEVD 240

Query: 673 FMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHIN 732
           FMFSS KQVSSL+K+LTSYS  + RQT+FASASIPQH+ FL +CIQQKWTKN+ IHVH+N
Sbjct: 241 FMFSS-KQVSSLRKLLTSYSSINTRQTLFASASIPQHKIFLDKCIQQKWTKNDAIHVHVN 300

Query: 733 AVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLM 792
            V+PMPSCL HRFV+C KN++H+T LS+L +D PQSAI+FV EQSE+SKKAG  P ATL+
Sbjct: 301 PVEPMPSCLHHRFVICLKNRRHETLLSLLQSDAPQSAIVFVGEQSEKSKKAGNAPSATLL 360

Query: 793 IDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIY 852
           I+FLK SY+G SD++LL+ED+NFNSRAASLSEVRQGGSYL+V+TD+ ARG+DLPETTHIY
Sbjct: 361 INFLKASYEGYSDILLLEEDMNFNSRAASLSEVRQGGSYLLVSTDIAARGLDLPETTHIY 420

Query: 853 NFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           N+DLPRTAIDYLHRAGRTGRKPFS++KC VT++I S ERFVL+K+ENEL+F C+EL+V
Sbjct: 421 NYDLPRTAIDYLHRAGRTGRKPFSDKKCSVTSIIISKERFVLEKYENELMFNCEELIV 473

[Close]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match: gi|743822091|ref|XP_011021586.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Populus euphratica])

HSP 1 Score: 628.2 bits (1619), Expect = 2.1e-176
Identity = 308/432 (71.30%), Postives = 366/432 (84.72%), Query Frame = 1 

Query: 472 STPKFRPPKAFMSSSSLNNAVDS---NFEASTLREICNGYVPDHILDRAEEIGFVAPTGV 531
           S   FRP KA ++S SL    D      EA TLREIC G+VP+H+L R EE+G+  PT V
Sbjct: 45  SRSNFRPLKAILNSPSLTKVADDAREKGEALTLREICLGHVPEHLLRRVEEVGYAVPTDV 104

Query: 532 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTK 591
           Q+QALPVLFSGRDC+LHAQTGSGKTL YLLLIFSVIN Q+SAVQ+LIVVPTRELGIQVTK
Sbjct: 105 QKQALPVLFSGRDCILHAQTGSGKTLAYLLLIFSVINTQRSAVQSLIVVPTRELGIQVTK 164

Query: 592 VARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERR 651
           VARMLAA P T ++  QKS  VMALLDGG+LRRHK+WLKA+PP+I+VAT+ SLCQM+E+ 
Sbjct: 165 VARMLAATP-TENDAEQKSCTVMALLDGGMLRRHKSWLKAEPPTIVVATIASLCQMLEKH 224

Query: 652 FLDLASLRVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQEC 711
            L L S++VLVIDEVDFMFSSSKQVSSL+K+LTSYS  ++RQTVFASASIPQH  FL +C
Sbjct: 225 LLKLESMQVLVIDEVDFMFSSSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHNRFLYDC 284

Query: 712 IQQKWTKNNVIHVHINAVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQ 771
           IQQKWTK +V+HVH+N ++PMP+CL HRFV+C K ++HQT LS+L +D P+S IIFV EQ
Sbjct: 285 IQQKWTKRDVVHVHVNPIEPMPTCLQHRFVICSKKERHQTLLSLLQSDAPKSGIIFVGEQ 344

Query: 772 SERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVAT 831
           SE+SKKAG  PP   ++DFLKTSY GCS+++LL+ED+NFNSRAASLSEVRQGG YL+VAT
Sbjct: 345 SEKSKKAGNGPPTVDLVDFLKTSYGGCSEILLLEEDMNFNSRAASLSEVRQGGGYLLVAT 404

Query: 832 DLVARGIDLPETTHIYNFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQK 891
           D+ ARG+DLPE THIYNFDLPRTA+DYLHRAGRTGRKPFS+EKC VT++I   ERFVLQ+
Sbjct: 405 DIAARGVDLPEITHIYNFDLPRTAVDYLHRAGRTGRKPFSDEKCNVTSIIMPEERFVLQR 464

Query: 892 FENELLFTCDEL 901
           +ENEL+F CDEL
Sbjct: 465 YENELMFNCDEL 475

[Close]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match: gi|596159174|ref|XP_007222883.1| (hypothetical protein PRUPE_ppa005191mg [Prunus persica])

HSP 1 Score: 624.8 bits (1610), Expect = 2.4e-175
Identity = 315/478 (65.90%), Postives = 391/478 (81.80%), Query Frame = 1 

Query: 433 MAATLLPSTKIPPPWLPVSSER----RYPI----YLPNLINSNGPICSTPKFRPPKAFMS 492
           MA   L +T++ P  LP  S++     +P     + P L +SNG + +     P +A ++
Sbjct: 1   MATATLSATQLLPLSLPKPSQKPRHAHFPFQSLNHSPRLFSSNGFVSNCS---PIQALLN 60

Query: 493 SSSLNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVL 552
           S+ +     S  E  TLR+IC  +VPDH+L + EE+GFV PT VQRQALP LFSGRDC+L
Sbjct: 61  STPITTEAGSEPEPFTLRQICQSHVPDHVLCKMEELGFVVPTPVQRQALPTLFSGRDCIL 120

Query: 553 HAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVG 612
           HAQTGSGKTLTYLLL+FS++NA++SAVQALIVVPTRELG+QVTKVARMLA KP    E+ 
Sbjct: 121 HAQTGSGKTLTYLLLVFSIVNARRSAVQALIVVPTRELGMQVTKVARMLATKPKEG-ELE 180

Query: 613 QKSYVVMALLDGGLLRRHKTWLKADPPSILVATVGSLCQMVERRFLDLASLRVLVIDEVD 672
           QKS  VMALLDGG+L RHK+WLKA+PP+I+VAT+GSLCQM+E+  + L ++RVLVIDEVD
Sbjct: 181 QKSCTVMALLDGGMLMRHKSWLKAEPPTIVVATIGSLCQMLEKHMIKLEAMRVLVIDEVD 240

Query: 673 FMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHVHIN 732
           FMFSS KQVSSL+K+LTSYS  + RQTVFASASIPQH+ FL +CIQQKWTKN+ IHVH+N
Sbjct: 241 FMFSS-KQVSSLRKLLTSYSSINTRQTVFASASIPQHKIFLDKCIQQKWTKNDTIHVHVN 300

Query: 733 AVQPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLM 792
            V+PMPSCL HRFV+C KN++H+T LS+L +D PQSAI+FV EQSE+SKKAG    ATL+
Sbjct: 301 PVEPMPSCLHHRFVICLKNRRHETLLSLLQSDAPQSAIVFVGEQSEKSKKAGNASSATLL 360

Query: 793 IDFLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIY 852
           I+FLK SY+G SD++LL+ED+NFNSRAASLSEVRQ GSYL+V+TD+ ARG+DLPETTHIY
Sbjct: 361 INFLKASYEGYSDILLLEEDMNFNSRAASLSEVRQAGSYLLVSTDIAARGLDLPETTHIY 420

Query: 853 NFDLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 903
           N+DLPRTAIDYLHRAGRTGRKPFS++KC VT++I S ERFVL+K+ENEL+F C+EL+V
Sbjct: 421 NYDLPRTAIDYLHRAGRTGRKPFSDKKCSVTSIIISKERFVLEKYENELMFNCEELIV 473

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g04340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RH58_ARATH2.6e-16667.54DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana GN... [more]
RH58_ORYSJ1.1e-14863.95DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. jap... [more]
TC10A_ARATH1.1e-5569.283-dehydrosphinganine reductase TSC10A OS=Arabidopsis thaliana GN=TSC10A PE=1 SV=... [more]
TC10B_ARATH3.6e-5467.253-dehydrosphinganine reductase TSC10B OS=Arabidopsis thaliana GN=TSC10B PE=1 SV=... [more]
CRHR_SYNY35.9e-3329.79RNA helicase CrhR OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crhR PE=1 S... [more]
BLAST of Cp4.1LG08g04340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5M9_CUCSA1.1e-22483.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149880 PE=4 SV=1[more]
M5XD89_PRUPE1.7e-17565.90Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005191mg PE=4 SV=1[more]
B9HV92_POPTR4.1e-17470.60Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s10230g PE=4 SV=2[more]
A0A067KVF9_JATCU4.5e-17368.46Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02130 PE=4 SV=1[more]
W9R5M0_9ROSA7.7e-17366.81DEAD-box ATP-dependent RNA helicase 58 OS=Morus notabilis GN=L484_007340 PE=4 SV... [more]
BLAST of Cp4.1LG08g04340 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19210.21.5e-16767.54 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT3G06060.16.2e-5769.28 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT5G19200.12.0e-5567.25 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G12770.11.5e-3128.80 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT1G55150.17.2e-2929.17 DEA(D/H)-box RNA helicase family protein[more]
BLAST of Cp4.1LG08g04340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076477|ref|XP_008438702.1|3.3e-22584.60PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cuc... [more]
gi|778678542|ref|XP_011650984.1|1.6e-22483.97PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cuc... [more]
gi|645232665|ref|XP_008222971.1|2.5e-17766.53PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Pru... [more]
gi|743822091|ref|XP_011021586.1|2.1e-17671.30PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Pop... [more]
gi|596159174|ref|XP_007222883.1|2.4e-17565.90hypothetical protein PRUPE_ppa005191mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR016040NAD(P)-bd_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR002347SDR_fam
IPR001650Helicase_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0047560 3-dehydrosphinganine reductase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g04340.1Cp4.1LG08g04340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 746..865
score: 2.0
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 786..866
score: 2.4
IPR001650Helicase, C-terminalPROFILEPS51194HELICASE_CTERcoord: 745..902
score: 13
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 84..101
score: 1.9E-6coord: 155..166
score: 1.
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 84..228
score: 1.6
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 527..700
score: 1.5
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 521..737
score: 2.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROFILEPS51192HELICASE_ATP_BIND_1coord: 533..716
score: 19
IPR014014RNA helicase, DEAD-box type, Q motifPROFILEPS51195Q_MOTIFcoord: 502..530
score: 6
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 75..229
score: 2.2
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 67..226
score: 2.96
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 717..893
score: 5.0E-24coord: 509..710
score: 1.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 534..868
score: 9.0
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 500..900
score: 2.4
NoneNo IPR availablePANTHERPTHR24031:SF228PROTEIN Y54G11A.3coord: 500..900
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g04340Cucsa.254100Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g04340CmaCh00G003740Cucurbita maxima (Rimu)cmacpeB012
Cp4.1LG08g04340CmaCh06G014260Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g04340CmoCh06G014300Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g04340Cla021650Watermelon (97103) v1cpewmB845
Cp4.1LG08g04340Csa3G149880Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g04340MELO3C006551Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g04340ClCG05G005310Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g04340CSPI03G13360Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g04340Lsi05G014430Bottle gourd (USVL1VR-Ls)cpelsiB718
Cp4.1LG08g04340MELO3C006551.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g04340CsaV3_3G013560Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g04340Bhi01G000617Wax gourdcpewgoB1110
Cp4.1LG08g04340CsGy3G013480Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g04340Carg17405Silver-seed gourdcarcpeB0861
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g04340Cucurbita pepo (Zucchini)cpecpeB192
Cp4.1LG08g04340Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g04340Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g04340Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g04340Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g04340Cucurbita maxima (Rimu)cmacpeB408
Cp4.1LG08g04340Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g04340Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g04340Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g04340Cucurbita moschata (Rifu)cmocpeB370
Cp4.1LG08g04340Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g04340Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g04340Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g04340Bottle gourd (USVL1VR-Ls)cpelsiB704
Cp4.1LG08g04340Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g04340Watermelon (Charleston Gray)cpewcgB762
Cp4.1LG08g04340Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g04340Watermelon (97103) v1cpewmB823
Cp4.1LG08g04340Watermelon (97103) v1cpewmB853
Cp4.1LG08g04340Silver-seed gourdcarcpeB0109
Cp4.1LG08g04340Silver-seed gourdcarcpeB0318
Cp4.1LG08g04340Silver-seed gourdcarcpeB0456
Cp4.1LG08g04340Wax gourdcpewgoB1096
Cp4.1LG08g04340Wax gourdcpewgoB1120