Cp4.1LG08g00440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g00440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 4280982 .. 4281356 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGGAGGAAACATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCAAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCGTCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCGGAGCCACTACTTCAAATTACTATATTACCCTTCAATTTTGTTTCTGGATTTATAA

mRNA sequence

ATGGGTGGCGGAGGAAACATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCAAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCGTCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCGGAGCCACTACTTCAAATTACTATATTACCCTTCAATTTTGTTTCTGGATTTATAA

Coding sequence (CDS)

ATGGGTGGCGGAGGAAACATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCAAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCGTCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCGGAGCCACTACTTCAAATTACTATATTACCCTTCAATTTTGTTTCTGGATTTATAA

Protein sequence

MGGGGNISMVMVRGRRRMDPVIYLLADKVDAESNESDAKARSGMSELIGERRMLPPLVCPPEELSSRSQRLIRHCKTALISASLRSFTSSWMGADRHFLLSSLFSLRSHYFKLLYYPSILFLDL
Homology
[Close]
BLAST of Cp4.1LG08g00440 vs. TrEMBL
Match: A0A0A0KP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 1  MGGGGNISMVMVRGRRRMDPVIYLLADKVDAESNESDAKARSGMSELIGERRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLADKVDAESNE DA+ARSG++ELIG+  MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of Cp4.1LG08g00440 vs. TrEMBL
Match: A0A151SBB2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 12 VRGRRRMDPVIYLLADKVDAESNESDAKARSGMSELIGERRMLPPLVCPPEELS 66
          VR RRR++ V+ LLAD+VDA+ +E DA+ R G+++LI + RMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

[Close]
BLAST of Cp4.1LG08g00440 vs. NCBI nr
Match: gi|700196233|gb|KGN51410.1| (hypothetical protein Csa_5G528950 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 1  MGGGGNISMVMVRGRRRMDPVIYLLADKVDAESNESDAKARSGMSELIGERRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLADKVDAESNE DA+ARSG++ELIG+  MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of Cp4.1LG08g00440 vs. NCBI nr
Match: gi|1012340892|gb|KYP52102.1| (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 12 VRGRRRMDPVIYLLADKVDAESNESDAKARSGMSELIGERRMLPPLVCPPEELS 66
          VR RRR++ V+ LLAD+VDA+ +E DA+ R G+++LI + RMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g00440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g00440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP64_CUCSA1.9e-2174.32Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1[more]
A0A151SBB2_CAJCA2.0e-0755.56Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1[more]
BLAST of Cp4.1LG08g00440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g00440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196233|gb|KGN51410.1|2.7e-2174.32hypothetical protein Csa_5G528950 [Cucumis sativus][more]
gi|1012340892|gb|KYP52102.1|2.9e-0755.56hypothetical protein KK1_026012, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g00440.1Cp4.1LG08g00440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g00440CmaCh06G009580Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g00440CmoCh06G009810Cucurbita moschata (Rifu)cmocpeB796
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g00440Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g00440Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g00440Cucurbita maxima (Rimu)cmacpeB023
Cp4.1LG08g00440Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g00440Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g00440Wild cucumber (PI 183967)cpecpiB864
Cp4.1LG08g00440Cucumber (Chinese Long) v2cpecuB862
Cp4.1LG08g00440Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g00440Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g00440Watermelon (97103) v1cpewmB845
Cp4.1LG08g00440Melon (DHL92) v3.5.1cpemeB815
Cp4.1LG08g00440Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g00440Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g00440Silver-seed gourdcarcpeB0145
Cp4.1LG08g00440Silver-seed gourdcarcpeB0194
Cp4.1LG08g00440Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g00440Wax gourdcpewgoB1105