CmoCh06G009810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G009810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr06 : 7725854 .. 7726228 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA

mRNA sequence

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA

Coding sequence (CDS)

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA
Homology
[Close]
BLAST of CmoCh06G009810 vs. TrEMBL
Match: A0A0A0KP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLADKVDAESNE DAEARSG++ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmoCh06G009810 vs. TrEMBL
Match: A0A151SBB2_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-09
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 12 VRGRRRMDPVIYLLADKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELS 66
          VR RRR++ V+ LLAD+VDA+ +E DAE R G+++LI +HRMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

[Close]
BLAST of CmoCh06G009810 vs. NCBI nr
Match: gi|700196233|gb|KGN51410.1| (hypothetical protein Csa_5G528950 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLADKVDAESNE DAEARSG++ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]
BLAST of CmoCh06G009810 vs. NCBI nr
Match: gi|1012340892|gb|KYP52102.1| (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 12 VRGRRRMDPVIYLLADKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELS 66
          VR RRR++ V+ LLAD+VDA+ +E DAE R G+++LI +HRMLPP +  PEELS
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELS 54

The following BLAST results are available for this feature:
BLAST of CmoCh06G009810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G009810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP64_CUCSA3.4e-2377.03Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528950 PE=4 SV=1[more]
A0A151SBB2_CAJCA8.2e-0959.26Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_026012 PE=4 SV=1[more]
BLAST of CmoCh06G009810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh06G009810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196233|gb|KGN51410.1|4.9e-2377.03hypothetical protein Csa_5G528950 [Cucumis sativus][more]
gi|1012340892|gb|KYP52102.1|1.2e-0859.26hypothetical protein KK1_026012, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G009810.1CmoCh06G009810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G009810CmaCh06G009580Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G009810Cp4.1LG08g00440Cucurbita pepo (Zucchini)cmocpeB796
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G009810Cucurbita moschata (Rifu)cmocmoB224
CmoCh06G009810Cucumber (Gy14) v1cgycmoB0718
CmoCh06G009810Cucurbita maxima (Rimu)cmacmoB017
CmoCh06G009810Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G009810Wild cucumber (PI 183967)cmocpiB814
CmoCh06G009810Cucumber (Chinese Long) v2cmocuB806
CmoCh06G009810Melon (DHL92) v3.5.1cmomeB755
CmoCh06G009810Watermelon (Charleston Gray)cmowcgB743
CmoCh06G009810Watermelon (97103) v1cmowmB793
CmoCh06G009810Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G009810Bottle gourd (USVL1VR-Ls)cmolsiB758
CmoCh06G009810Cucumber (Gy14) v2cgybcmoB401
CmoCh06G009810Melon (DHL92) v3.6.1cmomedB857
CmoCh06G009810Silver-seed gourdcarcmoB0137
CmoCh06G009810Silver-seed gourdcarcmoB0185
CmoCh06G009810Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G009810Watermelon (97103) v2cmowmbB833
CmoCh06G009810Wax gourdcmowgoB1013