Cp4.1LG08g00400 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g00400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane protein, putative
LocationCp4.1LG08 : 4281785 .. 4283828 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTCATGCCATTCCCACCCTCTTCTTCCACAATTCAAACGGCTCCTAAACCCTACCTTGTTTTTCTCTCTCTCTTTTTCAAATCCGACGGCGATTGTTGACGGCAGAAATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGTACTTCTCCATCTCTCTCTCTCTCTCTTTCGCTCTGTCTTCGTTGTCTTTCAATTCGTCTTGATTTCCGTCCACTTTCTTGGGGCTCTAATCGGTCCTTACTCGTGCGGTTGATTACGGGCTTTTCCTCCGCCAGAGGGTTTATTATTAATATTTTTTTGTTGCCATTGCCGGAATCACCCGTTTCTCAATTTGTTGCTTGTTTTTGTTTGAGTTTTGTTCTTTTCCACAATTGGAATATTGAAGGCACTCTTCAAATTTCTAACAACTATGTGTCTTCTCTGCGAATTCCGTTGGATTACTTTCCCTTTTCCTTAATCATTGGGAATCTTTTTCCCTCTTTCTTTTTAATGGTTCACTTCCATTTTCATTTTGATGGTTCACTTTTTCTTAACTCTTTTGGATTGGAGTAATTTATATGGTAGATTGAATTTCATTTATTTTTGAAATTTTGGGAACTTCTATGATTGTTTCTTTTGATCTATACTGAACAGAAACTACAAAAGTTCAGTCTTCCTCATTTGTTGTAATATGATAAATTTGACTGGTGTGTGTATGTGTGGGCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGATAAGTCCATCCCTTTGTTCTGGTATGCCACTTTCATTGATTATAATTTATAGAATTGAATTACTGATTTGTTGCCCAATTTAGAGCAGGAAGATGAACATTCCTAGCTCATTACCGGCTCATTATTGGACAATTACTTGTTCACAAGCATGGAGTTAATGATTTGAATTTTCCATCTAATGAAAAATCATTTTTGCTCCACTTCTTCTTCTTCTGATCCTTTGGAGAGATATTTTAGTGATAAGTTCTATAAGAGCTCGATGATCCCATTTGGTCAAATGCCTAGGGATAAACGTATTTCTGATTTGGTGGCGAGAATTTCTTTGTTAAAAACATTTCTGGATTTGATTTGCAGCTCAATTATTTCATCAAATTGGTATTCGATCATGGGACTTACTCGATTTTAAGTTTTTGATTTGGACCTGAAATTTTAAATTGTTTCATACGTTTTAGGGCAGAGTAGAGAGAAGGTTGAACAAACCTGTCCGTTTCCAAGGGCTGTTCATGTGAGGATTGGCTTTATCAGTTTCAAGATTTGATGCTTTTTTGAAACCTTCTCTCTTTTGCAATCTTTTCTCAGCTATGGTGGTGTGGATAAACCACTTTTATAATGGTCAATGTTGTTTGTTGATAAATGATCAATATTAGGTCTCCAATATTTGCCATATTTAGAGGTGGTAGGAAATACCCTGTCATGTCATTCCTCTATTGGAGGTCATTCCATACATGTGAATGCAATGACGGGCTCATCATTTCAATCTATTTTCCTATAATGCTATCTTAATGGTAAGTTGGATGTGTACCATATACTCTACACACAACCCATACCCATACGAGCGAGTATGGACTTACTAGTTAGTTCGCATACCGTTAGGCCACTTTTCTTGTTGGGCGAGCATACTATGGGAGCTCCTTAGGCCGACCACCCGTTAGAACTAGTAACCGTCCTGACAATATTAGGTTAACATAATGATCGTTTTTCTGCCTGACCAGAACTAGTCATCGTCACAACAACATTAGGTTAACATAATGATCTTTTTTGTGCCTGACTATCGCAGCATTATGATAAATATAATGATTGTTCTCCTGTCTCGTAATGTATGCGTTTGTACTATC

mRNA sequence

CAATTCATGCCATTCCCACCCTCTTCTTCCACAATTCAAACGGCTCCTAAACCCTACCTTGTTTTTCTCTCTCTCTTTTTCAAATCCGACGGCGATTGTTGACGGCAGAAATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGATAAGTCCATCCCTTTGTTCTGGGCAGAGTAGAGAGAAGGTTGAACAAACCTGTCCGTTTCCAAGGGCTGTTCATGTGAGGATTGGCTTTATCAGTTTCAAGATTTGATGCTTTTTTGAAACCTTCTCTCTTTTGCAATCTTTTCTCAGCTATGGTGGTGTGGATAAACCACTTTTATAATGGTCAATGTTGTTTGTTGATAAATGATCAATATTAGGTCTCCAATATTTGCCATATTTAGAGGTGGTAGGAAATACCCTGTCATGTCATTCCTCTATTGGAGGTCATTCCATACATGTGAATGCAATGACGGGCTCATCATTTCAATCTATTTTCCTATAATGCTATCTTAATGGTAAGTTGGATGTGTACCATATACTCTACACACAACCCATACCCATACGAGCGAGTATGGACTTACTAGTTAGTTCGCATACCGTTAGGCCACTTTTCTTGTTGGGCGAGCATACTATGGGAGCTCCTTAGGCCGACCACCCGTTAGAACTAGTAACCGTCCTGACAATATTAGGTTAACATAATGATCGTTTTTCTGCCTGACCAGAACTAGTCATCGTCACAACAACATTAGGTTAACATAATGATCTTTTTTGTGCCTGACTATCGCAGCATTATGATAAATATAATGATTGTTCTCCTGTCTCGTAATGTATGCGTTTGTACTATC

Coding sequence (CDS)

ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGA

Protein sequence

MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
Homology
[Close]
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match: A0A0A0KUK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G529450 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 83
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match: W9RT53_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003318 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1 

Query: 2  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 61
          KSA+  SS  +  R  EGI++ALSS DQSRLL++ RPPR VVS+ TCSKLC ICFV GVV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLVS-RPPRNVVSLWTCSKLCAICFVVGVV 75

Query: 62 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGY+LKRRV RW S+LL+RLKDD
Sbjct: 76 VGYTLKRRVRRWASRLLKRLKDD 97

[Close]
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match: M5VRN3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013822mg PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 3   SAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVG 62
           S++  SS ++ R GEG+A+ALSSSDQSR+L   RP RQVVS+ TCSKLC +CFVAG+VVG
Sbjct: 22  SSSSSSSFDSHRAGEGLAAALSSSDQSRILF-NRPARQVVSLWTCSKLCTLCFVAGIVVG 81

Query: 63  YSLKRRVNRWVSKLLRRLKDD 84
           Y+LKRRV  W S+LL+R+KD+
Sbjct: 82  YTLKRRVRSWASRLLKRIKDE 101

[Close]
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match: A0A061GK17_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037474 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 16  GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSK 75
           G G ++ALSS + SR+L+ TRPPRQ VS+ TCSKLC ICF AG+VVGY+LKRRV RW S+
Sbjct: 34  GAGASAALSSENTSRVLV-TRPPRQAVSLWTCSKLCAICFAAGIVVGYTLKRRVRRWASR 93

Query: 76  LLRRLKDD 84
           LL+RLKDD
Sbjct: 94  LLKRLKDD 100

[Close]
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match: A0A0D2MRG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G285500 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-17
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 16  GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSK 75
           G G A+  SS D +R+L++ RPPRQVVS+ TCSKLCG CFVAG++VGYSLKRRV  W SK
Sbjct: 35  GSGGAAGASSVDTARVLVS-RPPRQVVSLWTCSKLCGFCFVAGIIVGYSLKRRVRLWASK 94

Query: 76  LLRRLKDD 84
           LL+RLKDD
Sbjct: 95  LLKRLKDD 101

[Close]
BLAST of Cp4.1LG08g00400 vs. TAIR10
Match: AT1G19240.1 (AT1G19240.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-14
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 33  LATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD 84
           L TRPP  V S+ TCSKLC + FVAGV VGY+LKRRV RW SKLLRR+KDD
Sbjct: 55  LVTRPPSGV-SVWTCSKLCAVFFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104

[Close]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match: gi|659121277|ref|XP_008460579.1| (PREDICTED: uncharacterized protein LOC103499368 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 9.9e-28
Identity = 73/83 (87.95%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 1  MKSAALPSSVEALRNG-EGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRNG EGIASALSSSD SRLLLA RPPRQVVSI TCSKLC ICFVAGV
Sbjct: 1  MKSGISSSSVEALRNGGEGIASALSSSDHSRLLLANRPPRQVVSIWTCSKLCAICFVAGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 83
          VVGYSLKR VNRWVSKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWVSKLLRRLKD 83

[Close]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match: gi|700196234|gb|KGN51411.1| (hypothetical protein Csa_5G529450 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 83
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match: gi|703124536|ref|XP_010103076.1| (hypothetical protein L484_003318 [Morus notabilis])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1 

Query: 2  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 61
          KSA+  SS  +  R  EGI++ALSS DQSRLL++ RPPR VVS+ TCSKLC ICFV GVV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLVS-RPPRNVVSLWTCSKLCAICFVVGVV 75

Query: 62 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGY+LKRRV RW S+LL+RLKDD
Sbjct: 76 VGYTLKRRVRRWASRLLKRLKDD 97

[Close]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match: gi|595808705|ref|XP_007202798.1| (hypothetical protein PRUPE_ppa013822mg [Prunus persica])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 3   SAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVG 62
           S++  SS ++ R GEG+A+ALSSSDQSR+L   RP RQVVS+ TCSKLC +CFVAG+VVG
Sbjct: 22  SSSSSSSFDSHRAGEGLAAALSSSDQSRILF-NRPARQVVSLWTCSKLCTLCFVAGIVVG 81

Query: 63  YSLKRRVNRWVSKLLRRLKDD 84
           Y+LKRRV  W S+LL+R+KD+
Sbjct: 82  YTLKRRVRSWASRLLKRIKDE 101

[Close]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match: gi|658005346|ref|XP_008337816.1| (PREDICTED: uncharacterized protein LOC103400906 [Malus domestica])

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 2  KSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVV 61
          K  +  +S +  R  EG+A+ALSSSDQSR+LL  RP RQVVS+ TCSKLC +CFVAG+VV
Sbjct: 17 KLGSASASFDPHRGTEGLAAALSSSDQSRILL-NRPARQVVSLWTCSKLCTLCFVAGIVV 76

Query: 62 GYSLKRRVNRWVSKLLRRLKDD 84
          GY+LKRRV  W SKLL++++DD
Sbjct: 77 GYTLKRRVRSWASKLLKKMRDD 97

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g00400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g00400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK2_CUCSA2.9e-2681.93Uncharacterized protein OS=Cucumis sativus GN=Csa_5G529450 PE=4 SV=1[more]
W9RT53_9ROSA2.0e-1968.67Uncharacterized protein OS=Morus notabilis GN=L484_003318 PE=4 SV=1[more]
M5VRN3_PRUPE2.6e-1964.20Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013822mg PE=4 SV=1[more]
A0A061GK17_THECC1.4e-1769.12Uncharacterized protein OS=Theobroma cacao GN=TCM_037474 PE=4 SV=1[more]
A0A0D2MRG6_GOSRA4.2e-1769.12Uncharacterized protein OS=Gossypium raimondii GN=B456_004G285500 PE=4 SV=1[more]
BLAST of Cp4.1LG08g00400 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19240.12.3e-1472.55 unknown protein[more]
BLAST of Cp4.1LG08g00400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121277|ref|XP_008460579.1|9.9e-2887.95PREDICTED: uncharacterized protein LOC103499368 [Cucumis melo][more]
gi|700196234|gb|KGN51411.1|4.2e-2681.93hypothetical protein Csa_5G529450 [Cucumis sativus][more]
gi|703124536|ref|XP_010103076.1|2.9e-1968.67hypothetical protein L484_003318 [Morus notabilis][more]
gi|595808705|ref|XP_007202798.1|3.8e-1964.20hypothetical protein PRUPE_ppa013822mg [Prunus persica][more]
gi|658005346|ref|XP_008337816.1|2.4e-1862.20PREDICTED: uncharacterized protein LOC103400906 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g00400.1Cp4.1LG08g00400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g00400CmaCh06G009570Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g00400CmoCh06G009800Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g00400Carg24176Silver-seed gourdcarcpeB0145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g00400Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g00400Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g00400Silver-seed gourdcarcpeB0194
Cp4.1LG08g00400Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g00400Wax gourdcpewgoB1105
Cp4.1LG08g00400Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g00400Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g00400Cucurbita maxima (Rimu)cmacpeB023
Cp4.1LG08g00400Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g00400Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g00400Wild cucumber (PI 183967)cpecpiB864
Cp4.1LG08g00400Cucumber (Chinese Long) v2cpecuB862
Cp4.1LG08g00400Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g00400Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g00400Watermelon (97103) v1cpewmB845
Cp4.1LG08g00400Melon (DHL92) v3.5.1cpemeB815