Carg24176 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24176
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_221 : 155218 .. 156440 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACGGCTCCTAAACCCTACTTTGTATTTCTCTCTCTCTTTTTCAAGTCCGACGGCGATTGTTGACGGCAGAAATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGTACTTCTCCATCTCTCTCTCTCTCTCTTTCGCTCTGTCTTCGTTGTCTTTCAATTCGTCTTGATTTCCGTCCACTTTCTTGGGGCTCTAATCGGTCCTTACTCGTGCGGTTGATTACGGGCTTTTCCTCCGCCAGAGGGTTTATTATTAATATTTTTTTGTTGCCATTGCCGGAATCACCCGTTTCTCAATTTGTTGCTTGTTTTTGTTTGAGTTTTGTTCTTTTCCACAATTGGAATATTGAAGGCACTCTTCAAATTTCTAACAACTATGTGTCTTCTCTGCGAATTCCGTTGGATTACTTTCCCTTTTCCTTAATCATTGGGAATCTTTTTCCCTCTTTCTTTTTAATGGTTCACTTCCATTTTCATTTTGATGGTTCACTTTTTCTTAACTCTTTTGGATTGGAGTAATTTATATGGTAGATTGAATTTCATTTATTTTTGAAATTTTGGGAACTTCTATGATTGTTTCTTTTGATCTATACTCAACAGAAACTACAAAAGTTCAGTCTTCCTCATTTGTTGTAATATGATAAATTTGACTGGTGTGTGTATGTGTGGGCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGATAAGTCCATCCCTTTGTTCTGGTATGCCACTTTCATTGATTATAATTTATAGAATTGAATTACTGATTTGTTGCCCAATTTAGAGCAGGAAGATGAACATTCCTAGCTCATTACCGGCTCATTATTGGACAATTACTTGTTCACAAGCATGGAGTTAATGATTTGAATTTTCCATCTAATGAAAAATCATTTTTGCTCCACTTCTTCTTCTGATCCTTTGGAGAGGTATTTTAGTGATAAGTTCTATAAGAGCTCATCGATCCCATTTGGTCAAATGCCTAGGGATAAACGTATTTCTGATTTGGTGGCGAGAATTTCTTTGATAAAAA

mRNA sequence

TCAAACGGCTCCTAAACCCTACTTTGTATTTCTCTCTCTCTTTTTCAAGTCCGACGGCGATTGTTGACGGCAGAAATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGATAAGTCCATCCCTTTGTTCTGGTATGCCACTTTCATTGATTATAATTTATAGAATTGAATTACTGATTTGTTGCCCAATTTAGAGCAGGAAGATGAACATTCCTAGCTCATTACCGGCTCATTATTGGACAATTACTTGTTCACAAGCATGGAGTTAATGATTTGAATTTTCCATCTAATGAAAAATCATTTTTGCTCCACTTCTTCTTCTGATCCTTTGGAGAGGTATTTTAGTGATAAGTTCTATAAGAGCTCATCGATCCCATTTGGTCAAATGCCTAGGGATAAACGTATTTCTGATTTGGTGGCGAGAATTTCTTTGATAAAAA

Coding sequence (CDS)

ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGA

Protein sequence

MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

Homology

[Close]

BLAST of Carg24176 vs. NCBI nr
Match: XP_023540347.1 (uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 8.6e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV
Sbjct: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGYSLKRRVNRWVSKLLRRLKDD
Sbjct: 61 VGYSLKRRVNRWVSKLLRRLKDD 83

[Close]

BLAST of Carg24176 vs. NCBI nr
Match: XP_022956291.1 (uncharacterized protein LOC111458016 [Cucurbita moschata])

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV
Sbjct: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGYSLKRRVNRWVSKLLRRLK+D
Sbjct: 61 VGYSLKRRVNRWVSKLLRRLKED 83

[Close]

BLAST of Carg24176 vs. NCBI nr
Match: XP_022974252.1 (uncharacterized protein LOC111472885 [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALR+GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV+
Sbjct: 1  MKSAALPSSVEALRSGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVL 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VGYSLKRCVNRWVSKLLRRLKDD 83

[Close]

BLAST of Carg24176 vs. NCBI nr
Match: KGN51411.1 (hypothetical protein Csa_5G529450 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 8.1e-26
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 83
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]

BLAST of Carg24176 vs. NCBI nr
Match: XP_010103076.1 (uncharacterized protein LOC21386858 [Morus notabilis] >EXB94754.1 hypothetical protein L484_003318 [Morus notabilis])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 61
          KSA+  SS  +  R  EGI++ALSS DQSRLL+ +RPPR VVS+ TCSKLC ICFV GVV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLV-SRPPRNVVSLWTCSKLCAICFVVGVV 75

Query: 62 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGY+LKRRV RW S+LL+RLKDD
Sbjct: 76 VGYTLKRRVRRWASRLLKRLKDD 97

[Close]

BLAST of Carg24176 vs. TAIR10
Match: AT1G19240.1 (unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-14
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 33  LATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD 84
           L TRPP   VS+ TCSKLC + FVAGV VGY+LKRRV RW SKLLRR+KDD
Sbjct: 55  LVTRPP-SGVSVWTCSKLCAVFFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104

[Close]

BLAST of Carg24176 vs. TrEMBL
Match: tr|A0A0A0KUK2|A0A0A0KUK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-26
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 83
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]

BLAST of Carg24176 vs. TrEMBL
Match: tr|W9RT53|W9RT53_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 61
          KSA+  SS  +  R  EGI++ALSS DQSRLL+ +RPPR VVS+ TCSKLC ICFV GVV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLV-SRPPRNVVSLWTCSKLCAICFVVGVV 75

Query: 62 VGYSLKRRVNRWVSKLLRRLKDD 84
          VGY+LKRRV RW S+LL+RLKDD
Sbjct: 76 VGYTLKRRVRRWASRLLKRLKDD 97

[Close]

BLAST of Carg24176 vs. TrEMBL
Match: tr|M5VRN3|M5VRN3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G193100 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 14  RNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWV 73
           R GEG+A+ALSSSDQSR+L   RP RQVVS+ TCSKLC +CFVAG+VVGY+LKRRV  W 
Sbjct: 33  RAGEGLAAALSSSDQSRILF-NRPARQVVSLWTCSKLCTLCFVAGIVVGYTLKRRVRSWA 92

Query: 74  SKLLRRLKDD 84
           S+LL+R+KD+
Sbjct: 93  SRLLKRIKDE 101

[Close]

BLAST of Carg24176 vs. TrEMBL
Match: tr|A0A251J065|A0A251J065_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G092000 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 18 GIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLL 77
          G+ +ALSSSDQSR+L+ TRPPRQ+VS+ TCSKLC + FVAGVVVGY+LK+RV  W SKLL
Sbjct: 33 GVTTALSSSDQSRVLM-TRPPRQMVSLYTCSKLCTVFFVAGVVVGYTLKKRVRSWASKLL 92

Query: 78 RRLKDD 84
          +RLKDD
Sbjct: 93 KRLKDD 97

[Close]

BLAST of Carg24176 vs. TrEMBL
Match: tr|A0A061GK17|A0A061GK17_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037474 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 16  GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSK 75
           G G ++ALSS + SR+L+ TRPPRQ VS+ TCSKLC ICF AG+VVGY+LKRRV RW S+
Sbjct: 34  GAGASAALSSENTSRVLV-TRPPRQAVSLWTCSKLCAICFAAGIVVGYTLKRRVRRWASR 93

Query: 76  LLRRLKDD 84
           LL+RLKDD
Sbjct: 94  LLKRLKDD 100

The following BLAST results are available for this feature:

BLAST of Carg24176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540347.1	8.6e-36	100.00	uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo]	[more]
XP_022956291.1	2.5e-35	98.80	uncharacterized protein LOC111458016 [Cucurbita moschata]	[more]
XP_022974252.1	6.2e-34	96.39	uncharacterized protein LOC111472885 [Cucurbita maxima]	[more]
KGN51411.1	8.1e-26	81.93	hypothetical protein Csa_5G529450 [Cucumis sativus]	[more]
XP_010103076.1	4.3e-19	68.67	uncharacterized protein LOC21386858 [Morus notabilis] >EXB94754.1 hypothetical p...	[more]

BLAST of Carg24176 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19240.1	2.3e-14	72.55	unknown protein	[more]

BLAST of Carg24176 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24176 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUK2\|A0A0A0KUK2_CUCSA	5.4e-26	81.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1	[more]
tr\|W9RT53\|W9RT53_9ROSA	2.8e-19	68.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1	[more]
tr\|M5VRN3\|M5VRN3_PRUPE	2.4e-18	70.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G193100 PE=4 SV=1	[more]
tr\|A0A251J065\|A0A251J065_MANES	2.0e-17	72.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G092000 PE=4 SV=...	[more]
tr\|A0A061GK17\|A0A061GK17_THECC	2.7e-17	69.12	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037474 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24176-RA	Carg24176-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24176	CmaCh06G009570	Cucurbita maxima (Rimu)	carcmaB0128
Carg24176	CmoCh06G009800	Cucurbita moschata (Rifu)	carcmoB0137
Carg24176	Cp4.1LG08g00400	Cucurbita pepo (Zucchini)	carcpeB0145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24176	Cucurbita pepo (Zucchini)	carcpeB0144
Carg24176	Wild cucumber (PI 183967)	carcpiB0110
Carg24176	Cucumber (Chinese Long) v2	carcuB0105
Carg24176	Cucumber (Chinese Long) v3	carcucB0114
Carg24176	Bottle gourd (USVL1VR-Ls)	carlsiB088
Carg24176	Melon (DHL92) v3.5.1	carmeB0099
Carg24176	Melon (DHL92) v3.6.1	carmedB0101
Carg24176	Watermelon (Charleston Gray)	carwcgB0096
Carg24176	Watermelon (97103) v1	carwmB0094
Carg24176	Watermelon (97103) v2	carwmbB0098
Carg24176	Wax gourd	carwgoB0111
Carg24176	Silver-seed gourd	carcarB109
Carg24176	Cucumber (Gy14) v2	carcgybB0105
Carg24176	Cucumber (Gy14) v1	carcgyB0117
Carg24176	Cucurbita maxima (Rimu)	carcmaB0127
Carg24176	Cucurbita moschata (Rifu)	carcmoB0136