Cp4.1LG07g11270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g11270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionActin-related protein 2/3 complex subunit 3
LocationCp4.1LG07 : 9853887 .. 9856091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTTTTTACGAAACGTCCCCTAAATTTTAACATTATTTCCTTTTCACCCCTCCTTCTCGCAAATATTGACAGAGTAGAATGGAAAGAAGAAGACGGTGACGGAAATACCAGAGACGAAAACCTTTTCTCCGATCCCCCACCGTTAGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCCATTCCGTCTCCGATCCGCTCATTGGAACATAAACTCTCCGGTAAGTCTCATCGGATCCTAATTAGTCGATTTACAGTTGCAAAGTGAGAGCCGATCGAATTGCGATTTCGAATTCTATTGGAAATTCTGTCCTCTGGCTTTGAATGAATCAGAATTCGTTTGATTTGATTGATATTTATAGTTCATTGCTAAATTACCTGTTGGAACTCGAATTGTTCTTTAGACGTTAAAGAGATCGATCCGCTTACTTTACTTCTTTTCCTGCGATCTTCGCAGTTGGGAAGAACTCGGAGTTCGGATTGAAGGTTAAGACGTTGAATATTGAGATAAATTATGGTGAGGTTTCAATTGTTAAAAGCTTTAACTCACGATGTAGTTGTAGCATGGGAAGTGTTAAGATTGAGAAGGCCATTAGGAGGAAACTTGTTTGTATTTTTGATCCCATTGATTTCATGTTAGGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGGTTTACACGAACTCAATGGATTATTTTGTTTGTTTCATCTCGTCTTCCTATATGTTTCGTACTGAAATTCATCTTGGTTGGAAATTCACAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTGGGAACTAAGGCAATAATTAACTTGGGGTTGGAGAATGTTCCCGTGCCTGGAGAGTTGGGCTTTCCCTTTCCTGGACTCTTCCCTATCCCTCAATCTAATGAGGAAGCAGGTGAAGCTCGATTTTAGTTTTTGCTTAACTGCTCGATATCTGTAATGCTTTTATTTGTCAACTAGAAATGCTTACATATGAAGAATCTTCACTTCCCAATGGTCGCCACTAGCTCTGATTGATTGATTGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCTTATGGGGAAGCCTGGAAGGGAAATTCCAAAGAAGACAATATCTGCTAGCAGTGGGCTTAGGCTGTTACAAATGGTATTAGAGCCAGATATCGGGCAGTGTGTTAGCGAGGAAGATGGGCCTCCAAGGGGGTGGATTGTGAGATCCAGTATTGGTTAGAGAGGAGAATGAAACATTCCTTATAATAGTGTAGAAGTCTCTCCCTAATAGATGTGTTTTAAAACCTTGAGGGGAAGCCCGTAAAGGAAAGTCCAAAGAGGACAATATCTGGACAATATCTGGTAGCGATGAGTTTAGGTTGTTACATTGATGCATTCAGATTAGGCACTTTGCTCCTTTTTCTGCATTTAGACGTTTTTCCAATTCTGTTGATGGAGATATTATGAGTTAATTTTGTGTGAAAAAAAGCCAGTAAACTCCTGTTCCTTGTCTTAAGATCAGCAATTTCATAAGCTTCAAATATGGCTACCTTTATATGCAGATCTATTCAGGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGGACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGACCAATTTGCTTCCAAGATTATTGATGTGAACGTTAATGCACCGCATGGACTTCTATGATCATGTGGTTTCTTCTGCCCCTTCAGGAGTTTGTTTGTAATGTACTGAATCTGAATGTTATATTAGTTTATGCCAATGCATGTCAGTATAGATTCTGTCATTTCATACGTTTTGTACATTAATTACACCACTCCATCTTGTTTAGAAGGAAAAGCTCATTTCCATGGTTCTCATTGAATTCAATACCCTGTTTCTTACTC

mRNA sequence

TTATTTTTTACGAAACGTCCCCTAAATTTTAACATTATTTCCTTTTCACCCCTCCTTCTCGCAAATATTGACAGAGTAGAATGGAAAGAAGAAGACGGTGACGGAAATACCAGAGACGAAAACCTTTTCTCCGATCCCCCACCGTTAGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCCATTCCGTCTCCGATCCGCTCATTGGAACATAAACTCTCCGTTGGGAAGAACTCGGAGTTCGGATTGAAGGTTAAGACGTTGAATATTGAGATAAATTATGGTGAGGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTGGGAACTAAGGCAATAATTAACTTGGGGTTGGAGAATGTTCCCGTGCCTGGAGAGTTGGGCTTTCCCTTTCCTGGACTCTTCCCTATCCCTCAATCTAATGAGGAAGCAGATCTATTCAGGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGGACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGACCAATTTGCTTCCAAGATTATTGATGTGAACGTTAATGCACCGCATGGACTTCTATGATCATGTGGTTTCTTCTGCCCCTTCAGGAGTTTGTTTGTAATGTACTGAATCTGAATGTTATATTAGTTTATGCCAATGCATGTCAGTATAGATTCTGTCATTTCATACGTTTTGTACATTAATTACACCACTCCATCTTGTTTAGAAGGAAAAGCTCATTTCCATGGTTCTCATTGAATTCAATACCCTGTTTCTTACTC

Coding sequence (CDS)

TTATTTTTTACGAAACGTCCCCTAAATTTTAACATTATTTCCTTTTCACCCCTCCTTCTCGCAAATATTGACAGAGTAGAATGGAAAGAAGAAGACGGTGACGGAAATACCAGAGACGAAAACCTTTTCTCCGATCCCCCACCGTTAGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCCATTCCGTCTCCGATCCGCTCATTGGAACATAAACTCTCCGTTGGGAAGAACTCGGAGTTCGGATTGAAGGTTAAGACGTTGAATATTGAGATAAATTATGGTGAGGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTGGGAACTAAGGCAATAATTAACTTGGGGTTGGAGAATGTTCCCGTGCCTGGAGAGTTGGGCTTTCCCTTTCCTGGACTCTTCCCTATCCCTCAATCTAATGAGGAAGCAGATCTATTCAGGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGGACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGA

Protein sequence

LFFTKRPLNFNIISFSPLLLANIDRVEWKEEDGDGNTRDENLFSDPPPLGSALPLKFPAAIPSPIRSLEHKLSVGKNSEFGLKVKTLNIEINYGEVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIPQSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Homology
[Close]
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match: ARPC3_ARATH (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-90
Identity = 154/172 (89.53%), Postives = 168/172 (97.67%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFVDEEG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE GFPFPGLF +P
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 268
           QS +EA+LFRNYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 122 QSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

[Close]
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-38
Identity = 80/170 (47.06%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 97  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 156
           +HSS +D +  +K  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 157 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 216
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE GFP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 217 QSNEEADLFRNYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 265
            S +E ++ R YL+Q+R+ET  RL    +   +  P+KWW  F KR+FMN
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

[Close]
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38
Identity = 79/170 (46.47%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 97  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 156
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 157 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 216
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE GFP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 217 QSNEEADLFRNYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 265
            + +E ++ R YL+Q+R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38
Identity = 79/170 (46.47%), Postives = 114/170 (67.06%), Query Frame = 1 

Query: 97  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 156
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 157 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 216
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE GFP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 217 QSNEEADLFRNYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 265
            + +E ++ R YL+Q+R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.0e-34
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = 1 

Query: 97  HHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIK 156
           +HSSF+    +       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK
Sbjct: 4   YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIK 63

Query: 157 SPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIPQ 216
            PAD+ LIY T +I+  L R+ G        + + +L LEN  +PG  GFP   L+  P 
Sbjct: 64  GPADRTLIYGTLFISECLGRVNGL-NYRDAERQLNSLALENFSIPGSAGFPLNALYAPPL 123

Query: 217 SNEEADLFRNYLRQIREETSGRLLSVAYRA-NGTPNKWWLAFAKRKFMN 265
           S ++A++ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct: 124 SPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171

[Close]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match: A0A0A0LI55_CUCSA (Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus GN=Csa_2G008100 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.1e-93
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KS ADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE GFPFPGLFPIP
Sbjct: 62  KSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           QSNEEA+LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKRKFMNIIIP 174

[Close]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match: I1MU29_SOYBN (Actin-related protein 2/3 complex subunit 3 OS=Glycine max GN=GLYMA_17G108800 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 6.0e-89
Identity = 158/173 (91.33%), Postives = 169/173 (97.69%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFV+E+G+S+ACGCPLLPLKSHIKGPAPVSDQD+TDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VYHSSFVNEDGVSRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLA GTKAIINLGLE VPVPGE GFPFPGLFP+P
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPLP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           QS++EA+LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 122 QSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174

[Close]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match: I0J3F7_ARAHH (Pantothenate kinase 1 OS=Arabidopsis halleri subsp. halleri PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.3e-88
Identity = 155/172 (90.12%), Postives = 168/172 (97.67%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFVDEEGI+KACGCPLLPLKSHIKGPAP+S+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 400 VYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTNFDI 459

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE GFPFPGLF +P
Sbjct: 460 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 519

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 268
           QS EEADLFRNYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKRKF+N+++
Sbjct: 520 QSQEEADLFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFINVVV 571

[Close]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match: A0A151SR67_CAJCA (Actin-related protein 2/3 complex subunit 3 OS=Cajanus cajan GN=KK1_003584 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-88
Identity = 158/179 (88.27%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 90  EINYGEVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVF 149
           +I Y +V+HSSFV+E+G+ +ACGCPLLPLKSHIKGPAPVSDQD TDIVDEAITFFRANVF
Sbjct: 14  KIPYIQVYHSSFVNEDGVDRACGCPLLPLKSHIKGPAPVSDQDTTDIVDEAITFFRANVF 73

Query: 150 FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFP 209
           FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLA GTKAIINLGLE VPVPGE GFPFP
Sbjct: 74  FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFP 133

Query: 210 GLFPIPQSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           GLFP+PQS +E +LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 134 GLFPLPQSQKETELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 192

[Close]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match: R0I610_9BRAS (Actin-related protein 2/3 complex subunit 3 OS=Capsella rubella GN=CARUB_v10021035mg PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.3e-88
Identity = 155/172 (90.12%), Postives = 168/172 (97.67%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFVDEEGI+KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAI+FFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGITKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAISFFRANVFFTNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE GFPFPGLF +P
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 268
           QS +EADLFRNYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 122 QSQDEADLFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

[Close]
BLAST of Cp4.1LG07g11270 vs. TAIR10
Match: AT1G60430.1 (AT1G60430.1 actin-related protein C3)

HSP 1 Score: 333.2 bits (853), Expect = 1.5e-91
Identity = 154/172 (89.53%), Postives = 168/172 (97.67%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFVDEEG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE GFPFPGLF +P
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 268
           QS +EA+LFRNYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 122 QSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

[Close]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match: gi|659070910|ref|XP_008457213.1| (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo])

HSP 1 Score: 354.4 bits (908), Expect = 1.8e-94
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE GFPFPGLFPIP
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           QSNEEA+LFRNYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match: gi|778666246|ref|XP_011648714.1| (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 4.4e-93
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KS ADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE GFPFPGLFPIP
Sbjct: 62  KSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           QSNEEA+LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKRKFMNIIIP 174

[Close]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match: gi|356562945|ref|XP_003549728.1| (PREDICTED: actin-related protein 2/3 complex subunit 3 [Glycine max])

HSP 1 Score: 335.5 bits (859), Expect = 8.6e-89
Identity = 158/173 (91.33%), Postives = 169/173 (97.69%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFV+E+G+S+ACGCPLLPLKSHIKGPAPVSDQD+TDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VYHSSFVNEDGVSRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFDI 61

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLA GTKAIINLGLE VPVPGE GFPFPGLFP+P
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPLP 121

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           QS++EA+LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 122 QSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174

[Close]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match: gi|383100974|emb|CCD74517.1| (Pantothenate kinase 1 [Arabidopsis halleri subsp. halleri])

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88
Identity = 155/172 (90.12%), Postives = 168/172 (97.67%), Query Frame = 1 

Query: 96  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 155
           V+HSSFVDEEGI+KACGCPLLPLKSHIKGPAP+S+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 400 VYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTNFDI 459

Query: 156 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 215
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE GFPFPGLF +P
Sbjct: 460 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 519

Query: 216 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 268
           QS EEADLFRNYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKRKF+N+++
Sbjct: 520 QSQEEADLFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFINVVV 571

[Close]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match: gi|1012346132|gb|KYP57324.1| (Actin-related protein 2/3 complex subunit 3 [Cajanus cajan])

HSP 1 Score: 334.0 bits (855), Expect = 2.5e-88
Identity = 158/179 (88.27%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 90  EINYGEVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVF 149
           +I Y +V+HSSFV+E+G+ +ACGCPLLPLKSHIKGPAPVSDQD TDIVDEAITFFRANVF
Sbjct: 14  KIPYIQVYHSSFVNEDGVDRACGCPLLPLKSHIKGPAPVSDQDTTDIVDEAITFFRANVF 73

Query: 150 FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFP 209
           FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLA GTKAIINLGLE VPVPGE GFPFP
Sbjct: 74  FRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFP 133

Query: 210 GLFPIPQSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 269
           GLFP+PQS +E +LFRNYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 134 GLFPLPQSQKETELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 192

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g11270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARPC3_ARATH2.7e-9089.53Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana GN=ARPC3 PE=... [more]
ARPC3_MOUSE1.8e-3847.06Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3[more]
ARPC3_BOVIN2.4e-3846.47Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3[more]
ARPC3_HUMAN2.4e-3846.47Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3[more]
ARPC3_SCHPO6.0e-3443.20Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of Cp4.1LG07g11270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI55_CUCSA3.1e-9397.11Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus GN=Csa_2G008100 P... [more]
I1MU29_SOYBN6.0e-8991.33Actin-related protein 2/3 complex subunit 3 OS=Glycine max GN=GLYMA_17G108800 PE... [more]
I0J3F7_ARAHH1.3e-8890.12Pantothenate kinase 1 OS=Arabidopsis halleri subsp. halleri PE=4 SV=1[more]
A0A151SR67_CAJCA1.7e-8888.27Actin-related protein 2/3 complex subunit 3 OS=Cajanus cajan GN=KK1_003584 PE=3 ... [more]
R0I610_9BRAS2.3e-8890.12Actin-related protein 2/3 complex subunit 3 OS=Capsella rubella GN=CARUB_v100210... [more]
BLAST of Cp4.1LG07g11270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60430.11.5e-9189.53 actin-related protein C3[more]
BLAST of Cp4.1LG07g11270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070910|ref|XP_008457213.1|1.8e-9498.27PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo][more]
gi|778666246|ref|XP_011648714.1|4.4e-9397.11PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis sativus][more]
gi|356562945|ref|XP_003549728.1|8.6e-8991.33PREDICTED: actin-related protein 2/3 complex subunit 3 [Glycine max][more]
gi|383100974|emb|CCD74517.1|1.9e-8890.12Pantothenate kinase 1 [Arabidopsis halleri subsp. halleri][more]
gi|1012346132|gb|KYP57324.1|2.5e-8888.27Actin-related protein 2/3 complex subunit 3 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030833regulation of actin filament polymerization
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0005856cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR007204ARPC3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0015937 coenzyme A biosynthetic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0009407 toxin catabolic process
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0003779 actin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004594 pantothenate kinase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g11270.1Cp4.1LG07g11270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007204Actin-related protein 2/3 complex subunit 3GENE3DG3DSA:1.10.1760.10coord: 97..264
score: 3.3
IPR007204Actin-related protein 2/3 complex subunit 3PANTHERPTHR12391ARP2/3 COMPLEX 21 KD SUBUNITcoord: 72..267
score: 3.7E
IPR007204Actin-related protein 2/3 complex subunit 3PFAMPF04062P21-Arccoord: 97..264
score: 3.2
IPR007204Actin-related protein 2/3 complex subunit 3unknownSSF69060Arp2/3 complex 21 kDa subunit ARPC3coord: 97..264
score: 5.1
NoneNo IPR availablePANTHERPTHR12391:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 3coord: 72..267
score: 3.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g11270MELO3C004473Melon (DHL92) v3.5.1cpemeB778
Cp4.1LG07g11270MELO3C004473.2Melon (DHL92) v3.6.1cpemedB914
Cp4.1LG07g11270Carg17484Silver-seed gourdcarcpeB0362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g11270Silver-seed gourdcarcpeB0815
Cp4.1LG07g11270Cucumber (Chinese Long) v3cpecucB1006
Cp4.1LG07g11270Cucumber (Chinese Long) v3cpecucB1023
Cp4.1LG07g11270Wax gourdcpewgoB1017
Cp4.1LG07g11270Wax gourdcpewgoB1066
Cp4.1LG07g11270Cucurbita pepo (Zucchini)cpecpeB147
Cp4.1LG07g11270Cucumber (Gy14) v1cgycpeB0355
Cp4.1LG07g11270Cucumber (Gy14) v1cgycpeB0831
Cp4.1LG07g11270Cucurbita maxima (Rimu)cmacpeB206
Cp4.1LG07g11270Cucurbita maxima (Rimu)cmacpeB798
Cp4.1LG07g11270Cucurbita moschata (Rifu)cmocpeB178
Cp4.1LG07g11270Cucurbita moschata (Rifu)cmocpeB751
Cp4.1LG07g11270Wild cucumber (PI 183967)cpecpiB813
Cp4.1LG07g11270Wild cucumber (PI 183967)cpecpiB831
Cp4.1LG07g11270Cucumber (Chinese Long) v2cpecuB812
Cp4.1LG07g11270Cucumber (Chinese Long) v2cpecuB830
Cp4.1LG07g11270Bottle gourd (USVL1VR-Ls)cpelsiB655
Cp4.1LG07g11270Bottle gourd (USVL1VR-Ls)cpelsiB679
Cp4.1LG07g11270Watermelon (Charleston Gray)cpewcgB718
Cp4.1LG07g11270Watermelon (Charleston Gray)cpewcgB743
Cp4.1LG07g11270Watermelon (97103) v1cpewmB799
Cp4.1LG07g11270Watermelon (97103) v1cpewmB815
Cp4.1LG07g11270Melon (DHL92) v3.5.1cpemeB768
Cp4.1LG07g11270Melon (DHL92) v3.5.1cpemeB774
Cp4.1LG07g11270Cucumber (Gy14) v2cgybcpeB262
Cp4.1LG07g11270Cucumber (Gy14) v2cgybcpeB443
Cp4.1LG07g11270Melon (DHL92) v3.6.1cpemedB905
Cp4.1LG07g11270Melon (DHL92) v3.6.1cpemedB910