Carg17484 (gene) Silver-seed gourd

Overview
NameCarg17484
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionActin-related protein 2/3 complex subunit 3
LocationCucurbita_argyrosperma_scaffold_084 : 385628 .. 387633 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGAAGAAGACGGTGACGGAAATACCAGAGGCGAAAACCTTTTCTCCGATCCCCACCGTTAGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCTATTCCGGCTCTGATCCGCGCATTGGAACACAAACTCTCCGGTAAGTCTCATCGGATCCTAATTAGTTGATTTACAGTTGCAAAGTGAGAGCCGATCGAATTGCGATTTCGAATTCTATTGGAAATTCTGTCCTCTGGCTTTGAATGAATCAGAATTCGTTCGATTTGATTGATATTTATAGTTCATTGCTAAATTACCTGTTGGAACTCGAATTGTTCTTTAGACGTTAAAGAGATCGATCCGCTTACTTTACTTCTTTTCCAGCGATCTTCGCAGTTGGGGAGAACTCGGAGTTCGAATTGAAGGTTAAGACGTTGAATATTGAGATAAATTATGGTGAGGTTTCAATTGTTAAAAGCTTTAACTCACTATGTAGTTGTTGTAGCATGAGAAGTGTTAAGATTGAGAAGGCCATTAGGAGAAAACTTGTTTGTATTTTTGATCCCATTGATTTCATGTTAGGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCCTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGGTTTACACGAACTCAATGGATTATTTTGTTTGTTTCATCTCGTATGTGTTTCGTACTGAAATTCATCTTGGTTGGAAATTCACAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATAATTAACTTGGGCTTGGAGAATGTTCCCGTGCCTGGAGAGTTGGGCTTTCCCTTTCCAGGACTCTTCCCTATCCCTCAATCTAATGAGGAAGCAGGTGAAGCTCGATTTTAGTTTTTGCTTAACTGCTCGATATCTGTAATGCTTTTATTTGTCAACTAGTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGATGTGGAAACTTTTCCCTAGCAGACGCGTTTAAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTTGTTACAACTAAAAATGCTTACATATGAAGAATCTTCACTTCCCAATGGCCACCGCTAGCTCTGATTGATTGTGAGAACCCACGTTGGTTGAAGAGGGAAACGAAACATTCCTTTTAAGGGTGTGGAAACCTCTCCTTAGTAGACACGTTTTAAAATCTTGAGAGGAAGCCCAGAAGAGAAATCCCAAAGAGGACAATATCTGCTAGCATTGGGCTTAGGCTGTTACAAATGGTATTAGAGCTAGACATCGAGCGGTGTGTCAGTGAGGACGATAGGCCTCCAAGAGGAGTGGATTGTGAGATCCCATATCGGTTAGAGATGAGAATGAAACATTCCTTATAATAGTGTAGAAGTCTCTCCCTAGTAGATGCATTTTAAAACCTTGAGGGGAAAGCCTGGAAAGGAAAGTCCAAAGAAGACAATATTTGCTAGCAGTGAGTTTGGACTATTACATTGATGCAATTCAGATTAGGCACTTCGATCCTTTTTCTGCATTTCACACAAATTACGTCAGTAGTACTACATTCTTTTCCCAAAGGATGGAGATATTATGAGTTCATTTTGTGTGGAAAAAAGCCAGTAAACTCCTGTTCCTTGTCTTAAGATCAACAATTTCATAAGCTTCAAATATGGCTACCTTTATATGCAGAGCTATTCAGGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGAACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGG

mRNA sequence

ATGGAAAGAAGAAGACGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCTATTCCGGCTCTGATCCGCGCATTGGAACACAAACTCTCCGCGATCTTCGCAGTTGGGGAGAACTCGGAGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCCTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATAATTAACTTGGGCTTGGAGAATGTTCCCGTGCCTGGAGAGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGAACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGG

Coding sequence (CDS)

ATGGAAAGAAGAAGACGGTTCAGCGCTGCCTCTGAAATTCCCGGCGGCTATTCCGGCTCTGATCCGCGCATTGGAACACAAACTCTCCGCGATCTTCGCAGTTGGGGAGAACTCGGAGTTCACCACTCTAGCTTTGTAGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCCTTACTTCCTTTGAAAAGTCATATAAAGGGTCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTTGATGAAGCAATTACATTCTTTCGTGCCAATGTTTTCTTTAGAAATTTTGACATCAAGAGTCCTGCTGATAAGCTTCTCATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATAATTAACTTGGGCTTGGAGAATGTTCCCGTGCCTGGAGAGAATTATTTGAGGCAAATAAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCGTATAGAGCCAATGGAACTCCAAATAAATGGTGGCTAGCATTTGCAAAGAGG

Protein sequence

MERRRRFSAASEIPGGYSGSDPRIGTQTLRDLRSWGELGVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGENYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR
Homology
[Close]
BLAST of Carg17484 vs. NCBI nr
Match: XP_022938181.1 (actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_022965982.1 actin-related protein 2/3 complex subunit 3 [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 143/165 (86.67%), Postives = 143/165 (86.67%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. NCBI nr
Match: XP_023536665.1 (actin-related protein 2/3 complex subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 143/165 (86.67%), Postives = 143/165 (86.67%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. NCBI nr
Match: XP_008457213.1 (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 142/165 (86.06%), Postives = 143/165 (86.67%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. NCBI nr
Match: XP_011648714.1 (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis sativus] >KGN60719.1 hypothetical protein Csa_2G008100 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 140/165 (84.85%), Postives = 141/165 (85.45%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KS ADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKR
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. NCBI nr
Match: XP_022143039.1 (actin-related protein 2/3 complex subunit 3 [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 138/165 (83.64%), Postives = 143/165 (86.67%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEG++KACGCPLLPLKSHIKGPAPVSD+DKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGVNKACGCPLLPLKSHIKGPAPVSDEDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGELGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSNEEADVFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. TAIR10
Match: AT1G60430.1 (actin-related protein C3)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-73
Identity = 134/165 (81.21%), Postives = 142/165 (86.06%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           V+HSSFVDEEG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. Swiss-Prot
Match: sp|Q1ECJ7|ARPC3_ARATH (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-72
Identity = 134/165 (81.21%), Postives = 142/165 (86.06%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           V+HSSFVDEEG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. Swiss-Prot
Match: sp|Q3T035|ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 70/166 (42.17%), Postives = 98/166 (59.04%), Query Frame = 0 

Query: 41  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 100
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 101 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 160
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE            
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 161 ----------NYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKR 183
                      YL+Q+R+ET  RL    +   N  P+KWW  F KR
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKR 166

[Close]
BLAST of Carg17484 vs. Swiss-Prot
Match: sp|O15145|ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 70/166 (42.17%), Postives = 98/166 (59.04%), Query Frame = 0 

Query: 41  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 100
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 101 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 160
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE            
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 161 ----------NYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKR 183
                      YL+Q+R+ET  RL    +   N  P+KWW  F KR
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKR 166

[Close]
BLAST of Carg17484 vs. Swiss-Prot
Match: sp|Q9JM76|ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-28
Identity = 70/166 (42.17%), Postives = 98/166 (59.04%), Query Frame = 0 

Query: 41  HHSSFVDEEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 100
           +HSS +D +  +K  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 101 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 160
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ N P+PGE            
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 161 ----------NYLRQIREETSGRLLSVAY-RANGTPNKWWLAFAKR 183
                      YL+Q+R+ET  RL    +   +  P+KWW  F KR
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKR 166

[Close]
BLAST of Carg17484 vs. Swiss-Prot
Match: sp|Q9XWV3|ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans OX=6239 GN=arx-5 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 0 

Query: 60  LPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALK 119
           LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F+IK PAD+ +IYL FYI   L+
Sbjct: 25  LPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLR 84

Query: 120 RLEGCRTLAVGTKAIINLGLEN-VPVPGEN----------------------YLRQIREE 179
           +L+       G K +  L L + +P+PGEN                      YL+QIR+E
Sbjct: 85  KLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQE 144

Query: 180 TSGRLLSVAY-RANGTPNKWWLAFAKR 183
              RL  +A+      P+KWWL FA+R
Sbjct: 145 IGARLCDLAFPDPQDRPSKWWLCFARR 169

[Close]
BLAST of Carg17484 vs. TrEMBL
Match: tr|A0A1S3C5N9|A0A1S3C5N9_CUCME (Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496939 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.4e-73
Identity = 142/165 (86.06%), Postives = 143/165 (86.67%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. TrEMBL
Match: tr|A0A0A0LI55|A0A0A0LI55_CUCSA (Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G008100 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 8.3e-72
Identity = 140/165 (84.85%), Postives = 141/165 (85.45%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI
Sbjct: 2   VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KS ADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE            
Sbjct: 62  KSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPIP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+QIREETSGRLLSVAYR NGTPNKWWLAFAKR
Sbjct: 122 QSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKR 166

[Close]
BLAST of Carg17484 vs. TrEMBL
Match: tr|I0J3F7|I0J3F7_ARAHH (Pantothenate kinase 1 OS=Arabidopsis halleri subsp. halleri OX=81971 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 135/168 (80.36%), Postives = 144/168 (85.71%), Query Frame = 0 

Query: 37  ELGVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRN 96
           E+ V+HSSFVDEEGI+KACGCPLLPLKSHIKGPAP+S+QDKTDIVDEAITFFRANVFF N
Sbjct: 397 EICVYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTN 456

Query: 97  FDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE--------- 156
           FDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE         
Sbjct: 457 FDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLF 516

Query: 157 -------------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                        NYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 517 SLPQSQEEADLFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKR 564

[Close]
BLAST of Carg17484 vs. TrEMBL
Match: tr|V4KPY8|V4KPY8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023668mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.6e-70
Identity = 135/166 (81.33%), Postives = 143/166 (86.14%), Query Frame = 0 

Query: 39  GVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 98
           GV+HSSFVDEEGI+KACGCPLLPLKSHIKGPAPVS+QD+TDIVDEAITFFRANVFF NFD
Sbjct: 60  GVYHSSFVDEEGITKACGCPLLPLKSHIKGPAPVSEQDRTDIVDEAITFFRANVFFTNFD 119

Query: 99  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE----------- 158
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE           
Sbjct: 120 IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 179

Query: 159 -----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                      NYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 180 PPSQEEADLFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKR 225

[Close]
BLAST of Carg17484 vs. TrEMBL
Match: tr|A0A178W794|A0A178W794_ARATH (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g53460 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 4.6e-70
Identity = 134/165 (81.21%), Postives = 142/165 (86.06%), Query Frame = 0 

Query: 40  VHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 99
           V+HSSFVDEEGI+KACGCPLLPLKSHIKGPAP+S+QDKTDIVDEAITFFRANVFF NFDI
Sbjct: 2   VYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTNFDI 61

Query: 100 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGE------------ 159
           KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE++PVPGE            
Sbjct: 62  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121

Query: 160 ----------NYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKR 183
                     NYL+Q+REETSGRLLSVAYRANGTPNKWWLAFAKR
Sbjct: 122 QSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKR 166

The following BLAST results are available for this feature:
BLAST of Carg17484 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938181.12.3e-7386.67actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_... [more]
XP_023536665.12.3e-7386.67actin-related protein 2/3 complex subunit 3 [Cucurbita pepo subsp. pepo][more]
XP_008457213.15.1e-7386.06PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo][more]
XP_011648714.11.3e-7184.85PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis sativus] >KGN607... [more]
XP_022143039.11.3e-7183.64actin-related protein 2/3 complex subunit 3 [Momordica charantia][more]
BLAST of Carg17484 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60430.11.2e-7381.21actin-related protein C3[more]
BLAST of Carg17484 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1ECJ7|ARPC3_ARATH2.3e-7281.21Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A... [more]
sp|Q3T035|ARPC3_BOVIN1.2e-2842.17Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 ... [more]
sp|O15145|ARPC3_HUMAN1.2e-2842.17Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=... [more]
sp|Q9JM76|ARPC3_MOUSE2.6e-2842.17Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE... [more]
sp|Q9XWV3|ARPC3_CAEEL1.3e-2440.82Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans O... [more]
BLAST of Carg17484 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5N9|A0A1S3C5N9_CUCME3.4e-7386.06Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
tr|A0A0A0LI55|A0A0A0LI55_CUCSA8.3e-7284.85Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G... [more]
tr|I0J3F7|I0J3F7_ARAHH1.2e-7080.36Pantothenate kinase 1 OS=Arabidopsis halleri subsp. halleri OX=81971 PE=4 SV=1[more]
tr|V4KPY8|V4KPY8_EUTSA1.6e-7081.33Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023668mg PE=... [more]
tr|A0A178W794|A0A178W794_ARATH4.6e-7081.21Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0005856cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030833regulation of actin filament polymerization
Vocabulary: INTERPRO
TermDefinition
IPR036753ARPC3_sf
IPR007204ARPC3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17484-RACarg17484-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007204Actin-related protein 2/3 complex subunit 3PFAMPF04062P21-Arccoord: 148..182
e-value: 3.8E-8
score: 33.5
coord: 40..147
e-value: 1.5E-36
score: 125.9
IPR007204Actin-related protein 2/3 complex subunit 3PIRSFPIRSF016315p21-ARCcoord: 147..182
e-value: 2.2E-9
score: 35.4
coord: 38..148
e-value: 7.2E-40
score: 134.6
IPR007204Actin-related protein 2/3 complex subunit 3PANTHERPTHR12391ARP2/3 COMPLEX 21 KD SUBUNITcoord: 148..182
coord: 40..147
IPR036753Actin-related protein 2/3 complex subunit 3 superfamilyGENE3DG3DSA:1.10.1760.10coord: 149..182
e-value: 6.0E-7
score: 31.4
coord: 38..148
e-value: 2.7E-38
score: 133.5
IPR036753Actin-related protein 2/3 complex subunit 3 superfamilySUPERFAMILYSSF69060Arp2/3 complex 21 kDa subunit ARPC3coord: 41..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17484MELO3C004473Melon (DHL92) v3.5.1carmeB0258
Carg17484CmoCh12G012160Cucurbita moschata (Rifu)carcmoB0356
Carg17484Cp4.1LG07g11270Cucurbita pepo (Zucchini)carcpeB0362
Carg17484MELO3C004473.2Melon (DHL92) v3.6.1carmedB0268
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17484Silver-seed gourdcarcarB296
Carg17484Cucumber (Gy14) v2carcgybB0269
Carg17484Cucumber (Gy14) v2carcgybB0270
Carg17484Cucumber (Gy14) v1carcgyB0300
Carg17484Cucumber (Gy14) v1carcgyB0301
Carg17484Cucurbita maxima (Rimu)carcmaB0356
Carg17484Cucurbita maxima (Rimu)carcmaB0355
Carg17484Cucurbita moschata (Rifu)carcmoB0357
Carg17484Cucurbita pepo (Zucchini)carcpeB0357
Carg17484Wild cucumber (PI 183967)carcpiB0286
Carg17484Wild cucumber (PI 183967)carcpiB0287
Carg17484Cucumber (Chinese Long) v2carcuB0282
Carg17484Cucumber (Chinese Long) v2carcuB0283
Carg17484Cucumber (Chinese Long) v3carcucB0286
Carg17484Cucumber (Chinese Long) v3carcucB0287
Carg17484Bottle gourd (USVL1VR-Ls)carlsiB226
Carg17484Bottle gourd (USVL1VR-Ls)carlsiB227
Carg17484Melon (DHL92) v3.5.1carmeB0257
Carg17484Melon (DHL92) v3.5.1carmeB0259
Carg17484Melon (DHL92) v3.6.1carmedB0267
Carg17484Melon (DHL92) v3.6.1carmedB0269
Carg17484Watermelon (Charleston Gray)carwcgB0244
Carg17484Watermelon (Charleston Gray)carwcgB0246
Carg17484Watermelon (97103) v1carwmB0241
Carg17484Watermelon (97103) v1carwmB0243
Carg17484Watermelon (97103) v2carwmbB0258
Carg17484Watermelon (97103) v2carwmbB0260
Carg17484Wax gourdcarwgoB0331
Carg17484Wax gourdcarwgoB0334