Cp4.1LG07g08550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g08550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 7709370 .. 7709615 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

mRNA sequence

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Coding sequence (CDS)

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Protein sequence

METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAELQFHEKSEERTSVHRNMEDLMENSNSGHRNADLDELPAIAASSTP
Homology
[Close]
BLAST of Cp4.1LG07g08550 vs. TrEMBL
Match: A0A0A0LGJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQA-ELQFHEKSEERTSVHRNM 54
          METKATDSKAV+TDQ  SS    LRRPR +RRNQA E+QFHEKSEER+ + R +
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

[Close]
BLAST of Cp4.1LG07g08550 vs. NCBI nr
Match: gi|700205891|gb|KGN61010.1| (hypothetical protein Csa_2G034630 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQA-ELQFHEKSEERTSVHRNM 54
          METKATDSKAV+TDQ  SS    LRRPR +RRNQA E+QFHEKSEER+ + R +
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g08550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g08550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGJ2_CUCSA1.1e-0668.52Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034630 PE=4 SV=1[more]
BLAST of Cp4.1LG07g08550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g08550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205891|gb|KGN61010.1|1.6e-0668.52hypothetical protein Csa_2G034630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g08550.1Cp4.1LG07g08550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g08550CmaCh12G010190Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g08550CmoCh12G010250Cucurbita moschata (Rifu)cmocpeB175
Cp4.1LG07g08550MELO3C004175Melon (DHL92) v3.5.1cpemeB771
Cp4.1LG07g08550ClCG02G014820Watermelon (Charleston Gray)cpewcgB733
Cp4.1LG07g08550Lsi11G006460Bottle gourd (USVL1VR-Ls)cpelsiB659
Cp4.1LG07g08550MELO3C004175.2Melon (DHL92) v3.6.1cpemedB907
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g08550Cp4.1LG11g08650Cucurbita pepo (Zucchini)cpecpeB139
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g08550Cucumber (Gy14) v1cgycpeB0177
Cp4.1LG07g08550Cucurbita maxima (Rimu)cmacpeB789
Cp4.1LG07g08550Cucurbita moschata (Rifu)cmocpeB742
Cp4.1LG07g08550Wild cucumber (PI 183967)cpecpiB821
Cp4.1LG07g08550Cucumber (Chinese Long) v2cpecuB820
Cp4.1LG07g08550Watermelon (97103) v1cpewmB806
Cp4.1LG07g08550Cucumber (Gy14) v2cgybcpeB271
Cp4.1LG07g08550Silver-seed gourdcarcpeB0805
Cp4.1LG07g08550Silver-seed gourdcarcpeB1293
Cp4.1LG07g08550Cucumber (Chinese Long) v3cpecucB1014
Cp4.1LG07g08550Wax gourdcpewgoB1015