ClCG02G014820 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G014820
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 29170596 .. 29173668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCGAGGAAGGGGCCATTGACCCTTCTTCTGATATGAAGGATAAAATCAAACTCAAAGGAGTGGAGGAGAAGTTTTGAGACCAAGGATTATAATATTTATATCGATATTTCAATTTTATTATAGGTATATCAATAAAATATCGATATTGACAGATATTTCAGTAAGTCACAAAAATTTATAAAATTTATTTAGATTAATAATTAAGTTGTTTTAACTTCCTAAACTAAGTTATGGATGTTGTTATAAATATTCCTAATTGATATTGAACTAAACCTTGTTCAAACATAGGCCAATCGAGAGAGGTGGGAAAAGAGAGTTATAAAAATCTTTTTGTAAATTTTTATTTTTAAAAAAATGACATATCAATATTAATTATAATTTTTTAAAAAACCCTAATTGTCATAGTTAGTGACCTTTTAAACCTAACAAAATTTATAGTTTAATCTAAAAATTATGACCAATGGGGATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATGAAGATTGAGATGAATTATACAGACAATGACCGCTGCCAGTCCCAAAATTATAGAGAAAAATGGGCCGTTTCTGAGCCCAACCACCAACCTTTGTAGGACACTCAAAAAGTCAAAATTATTCATAAATGATAGTGCATCGTTTAAAAATCAATATTGTCCTTTTTAATTTTTAAAAATTAAAATCATTCAGATTTTTTTTTATCCCTTGAAATGGTATCTTTTGTTTTTGGTAATATTTGATTTTTAGTTTTAAAAAATTTAAATTTATTTTTCTCTCAATTTTTTTTTTTAATTTTAATGGTTCTCATACTTTTTTAAATAAAAGAGTTAAATTATTAGCTAAACTTTCAAGATAAGTTTTTAGAAATTACTTTTAAAATTTTTTATTTTTTAAAATATCGATAGTTAATAAACAAAATTACTTTTAAAATTTTTTATTTTTTAAAATATCGATGGTTAATAAACAACAAAACATGAATTTTAGAGATTATAAGCATAGATTTTCAAAAATAAAAAATTATGAAGAATAAAAAACAAACAAAATATCTGTTTGAACTCCTCATAAAAAGACAACCGTTTTTGAAAATTTGTTATTTTAGTCGCACACTCCCAATTTTCTTTCATTGTTTTGTCCTTATAGATTCTAAATATCTATTGTATCAGAATTAGCTTTTGTTACTTTTTTTCTACTCCCCAACTTTATGCTAAAGAGTTTATGTGACTCTAATACATATTCATTAAAACAAATGACAGTGTCAAAAAAATCAAACTATTTACAAATATAAAAAATTTCAATATCCATTAACAATAGATAGAGATAGACGGAGAAAATTCTTTATATTTATAGATATTTTGGCTCATTTTGCTATATTTGATAACATCATACACAAAAACTCATAAATAAAAATAGTTATTCTATAAAGTTAGAGATTACTCTTGAAACTCCAAAAAGGATCTAGTAGTCAATGGAGACCAATGAAAGGGTAAAAGGTTTAAGATAATTAGGTTCGAGCTAATTGCATTTAATAGCACTTTTAAAATTAATAATTAATCACATAGCAACATTTTTAGATAATTGCAAATATAGCAATTCCTATGGGTGATAGACTCTTATCAGTCATATAATCTATGACTTACACATTAATCTAAATATTTTTCATATCTACAAATCCTTTTGATTTTCCACTCAATTACTCGCAGTAGGGTTAAGTATGCTTAGTGATGCATACTCATAAGTAACAATTATAAAAAGTCCTTCGATTTTATGTTTAATATACTTGTAATTTAAAAAAGAATTACAAAATCTATTATCCTGTTTTAAATTTTAGTGAATATTATACATAAAATTAAATTTTTCGAAAAACTATTGAACATTTTTTTCGAGTTTAAAAACCTAAATTGAAATTTTAAACTAACAATTAACAGAAAAGATATATTTTGATCTCTAAATTTTGAGTGTAGTTTTCCGTTTAGTCTTTAACTTTCAAAATGTCACATTTTTATCCCCTAAATTGTTAACTTAATTCATTTGATCTCCAAGTTTCAAAATATTTATACTCAAATTTTGAATTGTACATTTTAATTAGTACCTGTATTTACTCATAAGTTTTCATTAATTACCACTCTGATCTTGGTGTTATAGTTCTAATTGTAAAATTTTAAAATTAACTTTGAAGAATAATTAATTTATTTATAATCAAGAGTATTTACTGAAAATTGTATTTTTCACCAAATAAATGAATAAAATCCTTCGTCGCTAAGGTCTAACGTGCATCCATTCAATTATACGCGTTTAGTTCTGATTGGTGATAGTTGTATTTATTTTTCCAAGCATGATTTTCTCATTTTCATTATTATTTCATTTCCGTTAAGATATTTAAAGATAAATCCAGAAAAAACGAAGCATTTGAAATTTCAAAATTCAAATAATTCGGATATACAAAAACGAAAAACATTCTACAAAAAAGAAAAAAAAGGAAAAACAACCCTAATGAAATTACTACTGATTTTTGAGGAAGATTAAGCCAATTAGGGCTCGTACTAATTACGGTCGCACTCACAAATTGGACAAGAAACAAAAATCTCCATCAAGAACAGAGTGCAGAAAACGAAAAGAGAAATCAATAAATTAAAGTTAAAAAGCAAAAGGAATCTCATATTGAGTACTAGAATGATTCGTTCTCACCAGTCATTACTCTGCTTCTAATGCCGCTGAGGAAGCGACAAGCGATTTTGAAATGGAATCGACCGAGAACGGATTACAAGTTGCAGCCGTAGAAGACGAAGAAGAAGCCGATCATTGAGACTAAGGCGACGGATTCGAAGGCGGTGGTGAGGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAGAGGGAGGAGAGAACGTCGGTCCACCGAAATATGGAGGATCTGAGGGAAAATTCGAATTCCGTCCAGCGGAATGCCGATCTTGGTAACCTTCCCGCCATTGCTGCTCTTTCGCCTTCTTGA

mRNA sequence

ATGTCTCTCGAGGAAGGGGCCATTGACCCTTCTTCTGATATGAAGGATAAAATCAAACTCAAAGGAGTGGAGGAGAAGAAGATTAAGCCAATTAGGGCTCGTACTAATTACGGTCGCACTCACAAATTGGACAAGAAACAAAAATCTCCATCAAGAACAGATCATTACTCTGCTTCTAATGCCGCTGAGGAAGCGACAAGCGATTTTGAAATGGAATCGACCGAGAACGGATTACAAGTTGCAGCCACTAAGGCGACGGATTCGAAGGCGGTGGTGAGGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAGAGGGAGGAGAGAACGTCGGTCCACCGAAATATGGAGGATCTGAGGGAAAATTCGAATTCCGTCCAGCGGAATGCCGATCTTGGTAACCTTCCCGCCATTGCTGCTCTTTCGCCTTCTTGA

Coding sequence (CDS)

ATGTCTCTCGAGGAAGGGGCCATTGACCCTTCTTCTGATATGAAGGATAAAATCAAACTCAAAGGAGTGGAGGAGAAGAAGATTAAGCCAATTAGGGCTCGTACTAATTACGGTCGCACTCACAAATTGGACAAGAAACAAAAATCTCCATCAAGAACAGATCATTACTCTGCTTCTAATGCCGCTGAGGAAGCGACAAGCGATTTTGAAATGGAATCGACCGAGAACGGATTACAAGTTGCAGCCACTAAGGCGACGGATTCGAAGGCGGTGGTGAGGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAGAGGGAGGAGAGAACGTCGGTCCACCGAAATATGGAGGATCTGAGGGAAAATTCGAATTCCGTCCAGCGGAATGCCGATCTTGGTAACCTTCCCGCCATTGCTGCTCTTTCGCCTTCTTGA

Protein sequence

MSLEEGAIDPSSDMKDKIKLKGVEEKKIKPIRARTNYGRTHKLDKKQKSPSRTDHYSASNAAEEATSDFEMESTENGLQVAATKATDSKAVVRDQTSSSTIGMLRRPRGQRRNQAELQFHEKREERTSVHRNMEDLRENSNSVQRNADLGNLPAIAALSPS
Homology
[Close]
BLAST of ClCG02G014820 vs. TrEMBL
Match: A0A0A0LGJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 83  TKATDSKAVVRDQTSSSTIGMLRRPRGQRRNQA-ELQFHEKREERTSVHRNM 134
           TKATDSKAVV DQ +SS +  LRRPR QRRNQA E+QFHEK EER+ + R +
Sbjct: 3   TKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

[Close]
BLAST of ClCG02G014820 vs. NCBI nr
Match: gi|700205891|gb|KGN61010.1| (hypothetical protein Csa_2G034630 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 83  TKATDSKAVVRDQTSSSTIGMLRRPRGQRRNQA-ELQFHEKREERTSVHRNM 134
           TKATDSKAVV DQ +SS +  LRRPR QRRNQA E+QFHEK EER+ + R +
Sbjct: 3   TKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

The following BLAST results are available for this feature:
BLAST of ClCG02G014820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGJ2_CUCSA1.5e-0767.31Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034630 PE=4 SV=1[more]
BLAST of ClCG02G014820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205891|gb|KGN61010.1|2.2e-0767.31hypothetical protein Csa_2G034630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G014820.1ClCG02G014820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G014820MELO3C004175Melon (DHL92) v3.5.1mewcgB375
ClCG02G014820CmaCh12G010190Cucurbita maxima (Rimu)cmawcgB156
ClCG02G014820CmoCh12G010250Cucurbita moschata (Rifu)cmowcgB144
ClCG02G014820Lsi11G006460Bottle gourd (USVL1VR-Ls)lsiwcgB098
ClCG02G014820Cp4.1LG11g08650Cucurbita pepo (Zucchini)cpewcgB104
ClCG02G014820Cp4.1LG07g08550Cucurbita pepo (Zucchini)cpewcgB733
ClCG02G014820MELO3C004175.2Melon (DHL92) v3.6.1medwcgB369
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G014820Silver-seed gourdcarwcgB0551
ClCG02G014820Silver-seed gourdcarwcgB0910
ClCG02G014820Cucumber (Chinese Long) v3cucwcgB137
ClCG02G014820Watermelon (97103) v2wcgwmbB138
ClCG02G014820Watermelon (97103) v2wcgwmbB161
ClCG02G014820Wax gourdwcgwgoB262
ClCG02G014820Watermelon (Charleston Gray)wcgwcgB125
ClCG02G014820Watermelon (Charleston Gray)wcgwcgB133
ClCG02G014820Cucumber (Gy14) v1cgywcgB103
ClCG02G014820Cucurbita maxima (Rimu)cmawcgB053
ClCG02G014820Cucurbita maxima (Rimu)cmawcgB695
ClCG02G014820Cucurbita moschata (Rifu)cmowcgB044
ClCG02G014820Cucurbita moschata (Rifu)cmowcgB312
ClCG02G014820Cucurbita moschata (Rifu)cmowcgB700
ClCG02G014820Wild cucumber (PI 183967)cpiwcgB128
ClCG02G014820Cucumber (Chinese Long) v2cuwcgB122
ClCG02G014820Melon (DHL92) v3.5.1mewcgB237
ClCG02G014820Watermelon (97103) v1wcgwmB197
ClCG02G014820Cucumber (Gy14) v2cgybwcgB029
ClCG02G014820Cucumber (Gy14) v2cgybwcgB119
ClCG02G014820Melon (DHL92) v3.6.1medwcgB228