Cp4.1LG07g07480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g07480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 6489351 .. 6489863 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCAAGGATACAATCTCCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCGTCACCCCAGACGAGGAGAAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCACAAATTGCTTGAAAATTGGCCATCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATCGAAAACGAAATATTCACCTCTGATCTTTACTTTGCTTTGAATACCATGGATGGTCGATGTTTTCTTTAG

mRNA sequence

ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCAAGGATACAATCTCCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCGTCACCCCAGACGAGGAGAAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCACAAATTGCTTGAAAATTGGCCATCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATCGAAAACGAAATATTCACCTCTGATCTTTACTTTGCTTTGAATACCATGGATGGTCGATGTTTTCTTTAG

Coding sequence (CDS)

ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCAAGGATACAATCTCCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCGTCACCCCAGACGAGGAGAAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCACAAATTGCTTGAAAATTGGCCATCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATCGAAAACGAAATATTCACCTCTGATCTTTACTTTGCTTTGAATACCATGGATGGTCGATGTTTTCTTTAG

Protein sequence

MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLNDANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQLWSFRRVRLVDIENEIFTSDLYFALNTMDGRCFL
Homology
[Close]
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match: A0A0A0KP87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G544060 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P MP  MR +I EM GY + LVI K+L +TD+N+  GRL +  K++ FDF T +E KLL+
Sbjct: 122 PSMPVAMRDRILEMGGYEINLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEEESKLLS 181

Query: 82  DANGV----MEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQL 141
           +        + V ILD+      + L K KI     YCL T WN  V    LK G  IQ+
Sbjct: 182 EQENKNKMGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQV 241

Query: 142 WSFRR 143
           WSFR+
Sbjct: 242 WSFRK 246

[Close]
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match: A0A0A0LRL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365090 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P+MP  MR ++    GY +QLVI K+L E+D++   GRL L  KK+  +FV  +E  +L 
Sbjct: 103 PEMPASMRDRVVGKGGYEIQLVIQKQLEESDVSRNHGRLCLPAKKVKTEFVREEERNILE 162

Query: 82  DANG-------VMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHL 141
           + N         +EV ++D+  R S M L K KI     YCL  +WN FV  N L+ G  
Sbjct: 163 EENDGKKKNKKGLEVGVMDDSLRESSMCLKKWKIGSGKFYCLMKNWNCFVEENGLRSGDY 222

[Close]
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match: A0A0A0KSY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570420 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P MP  MR +I EM GY ++LVI K+L +TD+N+  GR  +  K + FDF T +E KLL+
Sbjct: 125 PPMPVTMRDRILEMGGYEIRLVIQKELTDTDLNKNHGRFSMNTKLLSFDFATEEESKLLS 184

Query: 82  DANGV----MEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQL 141
           +        + V ILD+      + L K KI   + YCL T WN  V     K G  IQ+
Sbjct: 185 EQENKNKKGINVMILDDALEERILCLKKWKIGSGEVYCLMTQWNLMVEKRGFKSGEEIQV 244

Query: 142 WSFRR 143
           WSFR+
Sbjct: 245 WSFRK 249

[Close]
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match: A0A0A0KUX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570410 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-17
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P MP  MR +I EM GY + LVI K+L +TD+N+  GRL +  K++ FDF T +E KLL+
Sbjct: 106 PSMPVAMRDRILEMGGYEINLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEEESKLLS 165

Query: 82  DANGV----MEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQL 141
           +        + V  LD+      + L K KI     YCL T WN  V    LK G  IQ+
Sbjct: 166 EQENKNKMGINVMTLDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQV 225

Query: 142 WSFRR 143
           WSFR+
Sbjct: 226 WSFRK 230

[Close]
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match: A0A0A0KPD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550750 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1 

Query: 34  EMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLNDANGV----MEV 93
           EM GY + LVI K+L +TD+N+  GRL +  K++ FDF T +E KLL++        + V
Sbjct: 4   EMCGYEINLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEEESKLLSEQENKNKMGINV 63

Query: 94  KILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQLWSFRR 143
            +LD+      + L K KI   + YCL T WN  V    LK G  IQ+WSFR+
Sbjct: 64  MLLDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEERGLKSGEEIQVWSFRK 116

[Close]
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match: gi|778674339|ref|XP_004152777.2| (PREDICTED: putative B3 domain-containing protein At2g27410 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 1 

Query: 21  TPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKL- 80
           T +MP  +R +IEE+ G+N+Q    K+L +TDMN+  GRL +  KK++ DF + +E++L 
Sbjct: 95  TIEMPQMLRDRIEELGGFNIQFATQKRLQDTDMNKNHGRLLIPFKKLVNDFASEEEKRLL 154

Query: 81  -------LNDANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIG 140
                  L + NG M V I+D   R   + L   K+ +H++YCL + WN FV  N L+ G
Sbjct: 155 KQHDQEDLKNKNG-MTVLIIDPQLRNRQIGLKMWKVGQHESYCLMSKWNLFVKENSLESG 214

Query: 141 HLIQLWSFRRVRLVDIENEI---FTSDLYFALNTMD 166
             IQLWSFR      + +E      S+L FA   +D
Sbjct: 215 DYIQLWSFRSDNAFIVGHEAQLPINSNLCFAFVKLD 249

[Close]
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match: gi|659089541|ref|XP_008445565.1| (PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 1 

Query: 21  TPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLL 80
           T +M   +R +I+E+ G+++Q V  K+L +TDMN+  GRL +  KK+  DF + +E++LL
Sbjct: 90  TIEMSAMLRDRIDELDGFDIQYVTQKRLQDTDMNKNHGRLLIPFKKLRNDFASEEEKQLL 149

Query: 81  N--------DANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIG 140
                    + NG M V I+D   R   + L   K+ +HD+YCL + WNSFV  N L+ G
Sbjct: 150 KQHDQEDLKNKNG-MTVLIIDPQLRNRHIELKMWKVGQHDSYCLMSKWNSFVQENSLESG 209

Query: 141 HLIQLWSFR--RVRLVDIENEI-FTSDLYFALNTMD 166
             IQLWSFR   + +V  ++++   S+L FAL  +D
Sbjct: 210 DYIQLWSFRSNNIFIVGHQSQVPVNSNLCFALVKLD 244

[Close]
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match: gi|659072764|ref|XP_008467039.1| (PREDICTED: putative B3 domain-containing protein At2g27410 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P+MPT MR +IEEM GY + LVI K+L +TD+N+ +GRL +  KK+ FDF T +E  LL+
Sbjct: 103 PEMPTTMRDRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLLS 162

Query: 82  -----DANGVMEVKILDEGQRVSPMFLTKGKI--QEHDAYCLTTHWNSFVATNCLKIGHL 141
                +  G+  + + +  + +  + L K KI     D YCL T WN+FV    LK G  
Sbjct: 163 QQENKNKKGINVMIMNNMVEDIRSICLKKWKIGSGNGDVYCLMTQWNAFVEETGLKSGQH 222

Query: 142 IQLWSFRR 143
           IQLW FR+
Sbjct: 223 IQLWCFRK 230

[Close]
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match: gi|778703844|ref|XP_011655441.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1 

Query: 22  PDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEKLLN 81
           P MP  MR +I EM GY + LVI K+L +TD+N+  GRL +  K++ FDF T +E KLL+
Sbjct: 122 PSMPVAMRDRILEMGGYEINLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEEESKLLS 181

Query: 82  DANGV----MEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHLIQL 141
           +        + V ILD+      + L K KI     YCL T WN  V    LK G  IQ+
Sbjct: 182 EQENKNKMGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQV 241

Query: 142 WSFRR 143
           WSFR+
Sbjct: 242 WSFRK 246

[Close]
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match: gi|659072862|ref|XP_008467133.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-17
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 1 

Query: 19  ITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFVTPDEEK 78
           I  P MP  MR +I EM GY ++LVI K+L +TD+N+  GRL +  K++ FDF T +E K
Sbjct: 41  IEHPSMPVAMRDRILEMGGYEIRLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEEETK 100

Query: 79  LLNDANGV----MEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVATNCLKIGHL 138
           LL++        + V +LD+      + L K KI   + YCL T WN  V     K G  
Sbjct: 101 LLSEQENKNKRGINVMMLDDVLEERMLCLKKWKIGSGEVYCLMTRWNLMVEERGFKGGEE 160

Query: 139 IQLWSFRR 143
           IQ+WSFR+
Sbjct: 161 IQVWSFRK 168

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g07480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g07480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP87_CUCSA1.3e-1743.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G544060 PE=4 SV=1[more]
A0A0A0LRL4_CUCSA3.0e-1741.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365090 PE=4 SV=1[more]
A0A0A0KSY8_CUCSA3.0e-1741.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570420 PE=4 SV=1[more]
A0A0A0KUX9_CUCSA5.0e-1742.40Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570410 PE=4 SV=1[more]
A0A0A0KPD7_CUCSA1.1e-1441.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550750 PE=4 SV=1[more]
BLAST of Cp4.1LG07g07480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g07480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674339|ref|XP_004152777.2|1.0e-1837.82PREDICTED: putative B3 domain-containing protein At2g27410 [Cucumis sativus][more]
gi|659089541|ref|XP_008445565.1|1.0e-1838.46PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo][more]
gi|659072764|ref|XP_008467039.1|2.9e-1842.97PREDICTED: putative B3 domain-containing protein At2g27410 [Cucumis melo][more]
gi|778703844|ref|XP_011655441.1|1.9e-1743.20PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus][more]
gi|659072862|ref|XP_008467133.1|2.5e-1741.41PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
IPR005508DUF313
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g07480.1Cp4.1LG07g07480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005508B3 domain-containing proteinPFAMPF03754DUF313coord: 24..124
score: 1.
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 41..141
score: 1.
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 44..141
score: 9.6
NoneNo IPR availablePANTHERPTHR31541FAMILY NOT NAMEDcoord: 9..165
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g07480CmaCh12G009010Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g07480Cla022795Watermelon (97103) v1cpewmB814
Cp4.1LG07g07480ClCG11G011860Watermelon (Charleston Gray)cpewcgB723
Cp4.1LG07g07480Bhi06G001092Wax gourdcpewgoB1018
Cp4.1LG07g07480Carg24203Silver-seed gourdcarcpeB1382
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g07480Silver-seed gourdcarcpeB0848
Cp4.1LG07g07480Silver-seed gourdcarcpeB0880
Cp4.1LG07g07480Cucumber (Chinese Long) v3cpecucB0999
Cp4.1LG07g07480Cucumber (Chinese Long) v3cpecucB1005
Cp4.1LG07g07480Wax gourdcpewgoB1071
Cp4.1LG07g07480Cucurbita pepo (Zucchini)cpecpeB142
Cp4.1LG07g07480Cucurbita pepo (Zucchini)cpecpeB150
Cp4.1LG07g07480Cucurbita pepo (Zucchini)cpecpeB499
Cp4.1LG07g07480Cucumber (Gy14) v1cgycpeB0179
Cp4.1LG07g07480Cucurbita maxima (Rimu)cmacpeB163
Cp4.1LG07g07480Cucurbita maxima (Rimu)cmacpeB790
Cp4.1LG07g07480Cucurbita moschata (Rifu)cmocpeB140
Cp4.1LG07g07480Cucurbita moschata (Rifu)cmocpeB175
Cp4.1LG07g07480Cucurbita moschata (Rifu)cmocpeB743
Cp4.1LG07g07480Wild cucumber (PI 183967)cpecpiB807
Cp4.1LG07g07480Wild cucumber (PI 183967)cpecpiB812
Cp4.1LG07g07480Cucumber (Chinese Long) v2cpecuB807
Cp4.1LG07g07480Cucumber (Chinese Long) v2cpecuB811
Cp4.1LG07g07480Bottle gourd (USVL1VR-Ls)cpelsiB654
Cp4.1LG07g07480Bottle gourd (USVL1VR-Ls)cpelsiB681
Cp4.1LG07g07480Watermelon (Charleston Gray)cpewcgB745
Cp4.1LG07g07480Watermelon (97103) v1cpewmB820
Cp4.1LG07g07480Melon (DHL92) v3.5.1cpemeB749
Cp4.1LG07g07480Melon (DHL92) v3.5.1cpemeB777
Cp4.1LG07g07480Cucumber (Gy14) v2cgybcpeB145
Cp4.1LG07g07480Cucumber (Gy14) v2cgybcpeB261
Cp4.1LG07g07480Melon (DHL92) v3.6.1cpemedB888
Cp4.1LG07g07480Melon (DHL92) v3.6.1cpemedB913