Cp4.1LG07g03460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g03460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSkp1, putative
LocationCp4.1LG07 : 2245251 .. 2247451 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTATTTATTTATTGTAATTTAGGCTAAGAAAAGTGGTTATCGGTGGAATTTGCACTTGTTTTAAACCCATTTTGTGGTCACCGTTTGGTTTTCGTCCTCTTTAGCAAATCGCGACTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTTTGGGTTTCAGACCTCACCGAATCTTCGAGAAAGGAGATACGGCACCATGTCTTCAGGGAGGAAGATCACGTTGAAGAGCTCCGATGGCGAGATCTTTGAGGTTGACGAAGCCGTCGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCCCTCCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATTGAGTACTGCAAGAAGCACGTCGAGTCTCCCAAGCCGGAGGATCGTGCTGGCTCCGTCGAGGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCGACCTTGTTCGATCTCATTCTGGTATGCGGATGATACTTTCTAAATTTTCTTGCGGTTTTGTCCTTTTTTTTCCCCCTCTGTATGTATGCCCTCCGATTGTTCTCTTTTTGTGGTTAATTTCGGGTCTAGGGTTTGGATACTGCTTAGATTTGGGGTAAGGTTCTTTCGGTTCTTGTTTCGTTACGTACCCTATGATTGCATAATACGTTTTCTGTTTTGGTATGATGCCTGAATCGGATATCTTACATTGTGAATAAGATATTGCAAAATTACTGAAACATGATGGCCGCCTGCTGTTATATGTGACATCTATAGCTATATTTAGTCGCTAGGGGAGTTTATTTATTGATTTATAAGGGCTTTGTATGGGAGGTTCACAAATGTTTGTCATTGAGAAGGCTTTTGATGTATTAGGCGTTTGGCTGCAATCTTTATTCCTTATATAATCTTTGTTTGGAATTGTTACACTAAAACATGCGCGGTATATGTCCTGTTTATCGAGTGATGAAATTCATGTACACCAACAATAGCCATTCCAACTTGTTTTCTGTTTAATCCGATACAATCTTTTATGTTTTGGTTATGGCTGTAACATTAGTTTAGTTGAGGTAATTCGATGTCAGTTGCTTATTTTCAAGTGGGATATGGGTGAATCTCTTTCCTCTTACCAGTTTATCTTGATCTTTCCTGGTTTTATTGATTTTATTTCTACTTTCGTTCCTTCCTAATAAGATTTAAACGAAATTTTTTATTTACCGGTTTCGAACTTGCTAATCATATGATAATTATCCTCTGTTATTCATTCATGTGTGTGTGCACGCGCGGGCGTGTTTATATGTATTGGTTTATCTGAAATTTATAGGTTCTGTGTTGTATTTAGTTGAATTATTTCATCATCTTTTTTGACAAATAAGTAACTTGAATCCACCTAAATCCCTTCGGAAGATGTTAATTGTTTTCGTTGAGAGCTTAAAAATTAGGCTTTCTACTGAACCAATCGGCTTGATAGATTAATGTTACTTGTTATGTTTTGTAAATTACATTGACAACCATAGTAACTTCATACGGTTGTTCGGTGAGAGAATAGTCGAGGTGCACACAAGATGTGCTTGGTATATATTGTTAGACGACACGGTTGAAGCTCCCCCAAGTAGAGGCATCACCGTAACTTTTTGTTTCTTTTCATTCCCTTAACTTGTGATATGGGGATAGTGATGGTCAGAATCTAATCCTACATGACATTTGCAGGCTGCAAACTATCTCAATATCAAGAGCTTGCTAGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAATGACTTCACACCCGAGGAAGAGGAGGAAGTTCGTAGGGAGAATCAATGGGCGTTCGAGTAAAAAAAAAAAGGAAGTAAACGCTTATATTCTACTTTCTCTTGTCGCATTGTAACATTTGATACTTGTTCTTTCTGTTAAACTAAACTATGTGATGTTCGTTGGGTGTTATCTTCATTCCTCAATCTCTGGTTTTCATCGAACTTTACCCGACTTGCATTTCTTCATAATATAAGACAGAACTCGTGAAGCACTCGTGTCGCGATAATGTAATAGATTGGCTGCTTCATGAATGGTTTCATTGCTGTCAACTCCTCCGGTATTATATTACTTAACTGTTCAACTCA

mRNA sequence

TTTATTTATTTATTTATTGTAATTTAGGCTAAGAAAAGTGGTTATCGGTGGAATTTGCACTTGTTTTAAACCCATTTTGTGGTCACCGTTTGGTTTTCGTCCTCTTTAGCAAATCGCGACTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTTTGGGTTTCAGACCTCACCGAATCTTCGAGAAAGGAGATACGGCACCATGTCTTCAGGGAGGAAGATCACGTTGAAGAGCTCCGATGGCGAGATCTTTGAGGTTGACGAAGCCGTCGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCCCTCCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATTGAGTACTGCAAGAAGCACGTCGAGTCTCCCAAGCCGGAGGATCGTGCTGGCTCCGTCGAGGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCGACCTTGTTCGATCTCATTCTGGCTGCAAACTATCTCAATATCAAGAGCTTGCTAGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAATGACTTCACACCCGAGGAAGAGGAGGAAGTTCGTAGGGAGAATCAATGGGCGTTCGAGTAAAAAAAAAAAGGAAGTAAACGCTTATATTCTACTTTCTCTTGTCGCATTGTAACATTTGATACTTGTTCTTTCTGTTAAACTAAACTATGTGATGTTCGTTGGGTGTTATCTTCATTCCTCAATCTCTGGTTTTCATCGAACTTTACCCGACTTGCATTTCTTCATAATATAAGACAGAACTCGTGAAGCACTCGTGTCGCGATAATGTAATAGATTGGCTGCTTCATGAATGGTTTCATTGCTGTCAACTCCTCCGGTATTATATTACTTAACTGTTCAACTCA

Coding sequence (CDS)

ATGTCTTCAGGGAGGAAGATCACGTTGAAGAGCTCCGATGGCGAGATCTTTGAGGTTGACGAAGCCGTCGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCCCTCCCTAACGTCAACAGCAAGATCTTGTCCAAGGTTATTGAGTACTGCAAGAAGCACGTCGAGTCTCCCAAGCCGGAGGATCGTGCTGGCTCCGTCGAGGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCGACCTTGTTCGATCTCATTCTGGCTGCAAACTATCTCAATATCAAGAGCTTGCTAGATTTGACTTGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAATGACTTCACACCCGAGGAAGAGGAGGAAGTTCGTAGGGAGAATCAATGGGCGTTCGAGTAA

Protein sequence

MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Homology
[Close]
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.6e-69
Identity = 135/171 (78.95%), Postives = 146/171 (85.38%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDR--------------AGSVEDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  +               +GS ++DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.0e-65
Identity = 123/159 (77.36%), Postives = 141/159 (88.68%), Query Frame = 1 

Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVESPKPE----DRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE+   +    + A + +DDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.1e-57
Identity = 114/158 (72.15%), Postives = 131/158 (82.91%), Query Frame = 1 

Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRAGSVE-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS E D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.7e-55
Identity = 110/156 (70.51%), Postives = 127/156 (81.41%), Query Frame = 1 

Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S + I L SSDG+ FEV+EAVA++SQTI HM+EDDC   GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 122
           H V+   P       E+DL  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADM
Sbjct: 62  HHVDEANPIS-----EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 121

Query: 123 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-54
Identity = 109/158 (68.99%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FEV+EAVA+ESQTIKHMIEDDC D+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRAGSVED-DLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS E+ +LKTWD++FVKVD  TLFDL+ AANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match: A0A0A0LMK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346050 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.8e-81
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDR GSV+DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match: W9QZI9_9ROSA (SKP1-like protein 1B OS=Morus notabilis GN=L484_016022 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-75
Identity = 145/157 (92.36%), Postives = 151/157 (96.18%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DRA S +DDLK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVEAPKSDDRASSADDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match: B9R8D4_RICCO (Skp1, putative OS=Ricinus communis GN=RCOM_1598820 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-74
Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+G+KITLKSSDGE FEV+E VALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSAGKKITLKSSDGETFEVEELVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK EDR  S +DDLK WD+EFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSEDRPSSADDDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match: A7KZP6_HUMLU (SKP1 component-like 1 OS=Humulus lupulus PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.1e-74
Identity = 143/157 (91.08%), Postives = 150/157 (95.54%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+GRKITLKSSDGE  EVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTGRKITLKSSDGETLEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHV +PK EDRA SV+D+LK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVGAPKAEDRASSVDDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match: A0A067KYF6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08180 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.4e-74
Identity = 141/157 (89.81%), Postives = 151/157 (96.18%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+GRKITLKS+DGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTGRKITLKSADGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DR  S +++LKTWD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSDDRPSSADEELKTWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 262.7 bits (670), Expect = 1.5e-70
Identity = 135/171 (78.95%), Postives = 146/171 (85.38%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDR--------------AGSVEDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  +               +GS ++DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match: AT1G75950.1 (AT1G75950.1 S phase kinase-associated protein 1)

HSP 1 Score: 248.4 bits (633), Expect = 2.8e-66
Identity = 123/159 (77.36%), Postives = 141/159 (88.68%), Query Frame = 1 

Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVESPKPE----DRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE+   +    + A + +DDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 221.9 bits (564), Expect = 2.8e-58
Identity = 114/158 (72.15%), Postives = 131/158 (82.91%), Query Frame = 1 

Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRAGSVE-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS E D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-56
Identity = 110/156 (70.51%), Postives = 127/156 (81.41%), Query Frame = 1 

Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S + I L SSDG+ FEV+EAVA++SQTI HM+EDDC   GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 122
           H V+   P       E+DL  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADM
Sbjct: 62  HHVDEANPIS-----EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 121

Query: 123 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match: AT2G25700.1 (AT2G25700.1 SKP1-like 3)

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-56
Identity = 109/158 (68.99%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FEV+EAVA+ESQTIKHMIEDDC D+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRAGSVED-DLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS E+ +LKTWD++FVKVD  TLFDL+ AANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match: gi|449450520|ref|XP_004143010.1| (PREDICTED: SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDR GSV+DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match: gi|659089095|ref|XP_008445323.1| (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 5.6e-80
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDR GSV+DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match: gi|703095476|ref|XP_010095548.1| (SKP1-like protein 1B [Morus notabilis])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 145/157 (92.36%), Postives = 151/157 (96.18%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DRA S +DDLK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVEAPKSDDRASSADDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match: gi|1009108914|ref|XP_015887325.1| (PREDICTED: SKP1-like protein 1B [Ziziphus jujuba])

HSP 1 Score: 289.3 bits (739), Expect = 4.1e-75
Identity = 143/157 (91.08%), Postives = 152/157 (96.82%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           +KHVE+PKP++R  SV+D+LK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  RKHVEAPKPDERGSSVDDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match: gi|255539024|ref|XP_002510577.1| (PREDICTED: SKP1-like protein 1B [Ricinus communis])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 1 

Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+G+KITLKSSDGE FEV+E VALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSAGKKITLKSSDGETFEVEELVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRAGSVEDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK EDR  S +DDLK WD+EFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSEDRPSSADDDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g03460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKP1B_ARATH2.6e-6978.95SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1[more]
SKP1A_ARATH5.0e-6577.36SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1[more]
ASK4_ARATH5.1e-5772.15SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1[more]
ASK11_ARATH4.7e-5570.51SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1[more]
ASK3_ARATH1.1e-5468.99SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1[more]
BLAST of Cp4.1LG07g03460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMK0_CUCSA7.8e-8198.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346050 PE=3 SV=1[more]
W9QZI9_9ROSA1.3e-7592.36SKP1-like protein 1B OS=Morus notabilis GN=L484_016022 PE=3 SV=1[more]
B9R8D4_RICCO2.4e-7491.08Skp1, putative OS=Ricinus communis GN=RCOM_1598820 PE=3 SV=1[more]
A7KZP6_HUMLU4.1e-7491.08SKP1 component-like 1 OS=Humulus lupulus PE=2 SV=1[more]
A0A067KYF6_JATCU5.4e-7489.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08180 PE=3 SV=1[more]
BLAST of Cp4.1LG07g03460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42190.11.5e-7078.95 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein[more]
AT1G75950.12.8e-6677.36 S phase kinase-associated protein 1[more]
AT1G20140.12.8e-5872.15 SKP1-like 4[more]
AT4G34210.12.7e-5670.51 SKP1-like 11[more]
AT2G25700.15.9e-5668.99 SKP1-like 3[more]
BLAST of Cp4.1LG07g03460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450520|ref|XP_004143010.1|1.1e-8098.73PREDICTED: SKP1-like protein 1B [Cucumis sativus][more]
gi|659089095|ref|XP_008445323.1|5.6e-8098.09PREDICTED: SKP1-like protein 1B [Cucumis melo][more]
gi|703095476|ref|XP_010095548.1|1.8e-7592.36SKP1-like protein 1B [Morus notabilis][more]
gi|1009108914|ref|XP_015887325.1|4.1e-7591.08PREDICTED: SKP1-like protein 1B [Ziziphus jujuba][more]
gi|255539024|ref|XP_002510577.1|3.5e-7491.08PREDICTED: SKP1-like protein 1B [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016897SKP1
IPR016073Skp1_comp_POZ
IPR016072Skp1_comp_dimer
IPR011333SKP1/BTB/POZ_sf
IPR001232SKP1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016301 kinase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0008080 N-acetyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g03460.1Cp4.1LG07g03460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 4..107
score: 2.4
IPR011333SKP1/BTB/POZ domainunknownSSF54695POZ domaincoord: 5..67
score: 1.02
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 108..155
score: 8.0
IPR016072SKP1 component, dimerisationunknownSSF81382Skp1 dimerisation domain-likecoord: 80..155
score: 2.75
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 6..64
score: 3.4
IPR016897S-phase kinase-associated protein 1PIRPIRSF028729SCF_Skpcoord: 1..157
score: 1.1
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 3..157
score: 8.7
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 1..157
score: 5.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g03460CmaCh12G003910Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g03460CmoCh05G003250Cucurbita moschata (Rifu)cmocpeB750
Cp4.1LG07g03460Cla022402Watermelon (97103) v1cpewmB782
Cp4.1LG07g03460Cla015822Watermelon (97103) v1cpewmB808
Cp4.1LG07g03460Csa2G346050Cucumber (Chinese Long) v2cpecuB824
Cp4.1LG07g03460MELO3C011345Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g03460ClCG08G014070Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g03460ClCG02G004050Watermelon (Charleston Gray)cpewcgB735
Cp4.1LG07g03460CSPI02G16800Wild cucumber (PI 183967)cpecpiB825
Cp4.1LG07g03460CSPI07G01030Wild cucumber (PI 183967)cpecpiB850
Cp4.1LG07g03460Lsi11G012050Bottle gourd (USVL1VR-Ls)cpelsiB662
Cp4.1LG07g03460Lsi08G012980Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g03460MELO3C011345.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g03460CsaV3_2G024370Cucumber (Chinese Long) v3cpecucB1018
Cp4.1LG07g03460Bhi04G000097Wax gourdcpewgoB1029
Cp4.1LG07g03460CsGy7G000850Cucumber (Gy14) v2cgybcpeB987
Cp4.1LG07g03460CsGy2G016790Cucumber (Gy14) v2cgybcpeB275
Cp4.1LG07g03460Carg03976Silver-seed gourdcarcpeB1368
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g03460Cp4.1LG11g02740Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g03460Cucumber (Gy14) v1cgycpeB1047
Cp4.1LG07g03460Cucurbita maxima (Rimu)cmacpeB797
Cp4.1LG07g03460Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g03460Watermelon (Charleston Gray)cpewcgB732
Cp4.1LG07g03460Silver-seed gourdcarcpeB0205