CSPI02G16800 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16800
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Skp1, putative
Location	Chr2 : 16080571 .. 16082971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGCAGAGAGTGGTAGGATTTTTATTATATTGTTTTTTAAAATAATGATAACAACAAATATATTTATTAATAAAAAGAAAATTGGGCAATCGGTGGAGTTTGATCTTAAAAGCCATATTTTTGTGGTCAGTTTCATACATATTTGGTTTCTCTCTTTCTCAAATCGCAAAACGCTTCTCTCTGTGTTTTCGAACCTCACCGAATCCCAAACACGCCACCATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGACTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAAAAGCACGTCGAGTCCCCTAAGCCCGAGGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCCACCTTATTCGATCTCATTCTGGTTTGTTCATCCTACCTCTTTTGAGTTCTTTCGCCTTTTTCTTTGTGGGTTTTTCTTTTTTGCTTCTTTCTATCTTTGCCCTCTCTTTGACTGCGTATGTATTCGATTGTTTGGTTAAATTTGGGGGTCTAGGGTTTCGGTGCTTCGTAAGATTGGGGTTAGGGTTTTTGTACCTACTCTATGTTTGCATAAACCGTTTTCTGTTTTGGTTTGATGCCTGAATGAGATATAACAAATTGTTAAATGGGATATTGCAAAATTACCGAAGCGTGAATGCCTCCTCCAGTTTTGTTGTCGAATTGGAGTCGATAGAGGAGCTCATTTATTGATTTATAAGGACTATAAAGATTTTCTCATTGGGAACCCTTGATACAAGGCGTTTGGCTGCAATCTTCTTTAGAATTTTGGTAGTATCCCCGTTTATTTTAGATATTCTTAAACTACCAGCAAAATGACCACACGGGTGCCCATTATTCTTACATGTTTCGTTTTTGAAAAGGCTTCACTGGATGCAATCCATAGCTATTGTAGCTATCATCAAGTAGGACATGTTCAATTCAATCCTTTTAAGTTTTGGGTGGACGTGGAAGAAATATCCATTTAGTTTAGTTGAGGTAATTCGATGTAAATTGATTATTTGTGGACGGGATATGGGTGAATCATTGTTTTCTTAATACCCATTGAACTTGACCTCCCTGCCTTCTTCGGGTTATAATGAGTTTATTTCTACTTTTGATCCATCATTATTAGACTTAAATGAAATTGCAAGTTTGTTTGCACATTCGTTATTCTGAAGTCCTTCCTTTTTATAATCTTGTTGATCATCTCATGTTATTCATTCACACGCGTGTGTTTTTGATTATGGTTCATCTAAAATTTCTTGGTTCTCTTCATCATTACTTTAAACTGCCATTTATTGACAAACGAGTAGCCAAGAAGAACCATCATTCATTATTCTCATCTGAAAAAGTAGAACCATCGTGTTGTTGGTTACTGTTGAGATCTCTGTTCATATTTCTCAAATTGACGTGTGATGGAGATAAACAATTTTGAGAATCTTTTTTTTTTTTTTGCAGGCTGCAAACTATCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAAGGGAAGACTCCAGAGGAGATCAGGAAGACATTTAACATCAAGAATGACTTTACACCCGAGGAAGAGGAAGAGGTCCGTAGGGAGAACCAATGGGCATTTGAATGAAAAAAGAATAAAAGAGATGGAATCACTTATATGTTATTAACTTTTTCTCTTGTTGCATGGTGATGTTTGATGCTTGTGTTATCTGTTGTGTTGAACTCTCGTGATGTTCGTTGGGTGTTAACTATCCTACAATGTTATCTTTCATCCAACGTACCTGACTTCGACTTCAACATTTTTTATTAATATCGTAGATTGCCTGCTATTATGAATGGTTTGATTTCACTGTTGTCAACTCTTAAGCGTCAAGCAAAGAGAGGACGTGTGAGTTCTTGGACTCGAGATGTAATAATCCTAATAAGTTAATAGGTCCTTTTGAAGTTTGGACATCCATTCAAATGGATGACACTTTCACTATCAAAACAGGTTTGAACTTAACTTTGATTGGTGCATTCACATTATATGCTGTAGTTTGGGGAAATAGGGGTGGGATGTGGGTAGCTTATAAATCTAAGATAAGATGCATACCCATGCCCTTGCTACTAATAATAGTACCACACAAGGCCATTCAATTATGATGAGGGAAGAATTTTTTAATAGAACTTCCATCGCATTTTGTGACATTCTTCTTAACGTTTTACCTTAATTGTTGGACTGATGGTTGAAAATAAAAACGCATCATTTTACATTCT

mRNA sequence

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGACTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAAAAGCACGTCGAGTCCCCTAAGCCCGAGGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCCACCTTATTCGATCTCATTCTGGCTGCAAACTATCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAAGGGAAGACTCCAGAGGAGATCAGGAAGACATTTAACATCAAGAATGACTTTACACCCGAGGAAGAGGAAGAGGTCCGTAGGGAGAACCAATGGGCATTTGAATGA

Coding sequence (CDS)

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGACTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGTCCAAGGTTATCGAGTACTGCAAAAAGCACGTCGAGTCCCCTAAGCCCGAGGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGGCCACCTTATTCGATCTCATTCTGGCTGCAAACTATCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGACATGATCAAAGGGAAGACTCCAGAGGAGATCAGGAAGACATTTAACATCAAGAATGACTTTACACCCGAGGAAGAGGAAGAGGTCCGTAGGGAGAACCAATGGGCATTTGAATGA

Homology

[Close]

BLAST of CSPI02G16800 vs. Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-70
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRT--------------GSVDDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  + T              GS D+DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CSPI02G16800 vs. Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-65
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 1


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVESP--KPEDRTGSV--DDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE+   K E   G+   DDDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CSPI02G16800 vs. Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.6e-57
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRTGSVD-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS + D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CSPI02G16800 vs. Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.2e-55
Identity = 109/156 (69.87%), Postives = 127/156 (81.41%), Query Frame = 1


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S + I L SSDG+ FEV+EAVA++SQTI HM+EDDC   GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 122
           H V+   P       ++DL  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADM
Sbjct: 62  HHVDEANPIS-----EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 121

Query: 123 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CSPI02G16800 vs. Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-54
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FEV+EAVA+ESQTIKHMIEDDC D+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRTGSVDD-DLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS ++ +LKTWD++FVKVD  TLFDL+ AANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of CSPI02G16800 vs. TrEMBL
Match: A0A0A0LMK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346050 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.2e-82
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. TrEMBL
Match: W9QZI9_9ROSA (SKP1-like protein 1B OS=Morus notabilis GN=L484_016022 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.6e-76
Identity = 145/157 (92.36%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DR  S DDDLK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVEAPKSDDRASSADDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. TrEMBL
Match: B9R8D4_RICCO (Skp1, putative OS=Ricinus communis GN=RCOM_1598820 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.9e-75
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+G+KITLKSSDGE FEV+E VALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSAGKKITLKSSDGETFEVEELVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK EDR  S DDDLK WD+EFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSEDRPSSADDDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. TrEMBL
Match: A0A067KYF6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08180 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 142/157 (90.45%), Postives = 151/157 (96.18%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+GRKITLKS+DGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTGRKITLKSADGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DR  S D++LKTWD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSDDRPSSADEELKTWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. TrEMBL
Match: B9R8D3_RICCO (Skp1, putative OS=Ricinus communis GN=RCOM_1598810 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 144/157 (91.72%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTSRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+ K +DR  SVDD+LKTWD+EFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETSKSDDRPSSVDDELKTWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 266.5 bits (680), Expect = 1.0e-71
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIEDDC D+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRT--------------GSVDDDLKTWDSEFVKVDQATLFDLILAANYLN 120
           K+HVE+ +  + T              GS D+DLKTWDSEF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CSPI02G16800 vs. TAIR10
Match: AT1G75950.1 (AT1G75950.1 S phase kinase-associated protein 1)

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-66
Identity = 126/159 (79.25%), Postives = 141/159 (88.68%), Query Frame = 1


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S +KI LKSSDGE FEV+EAVALESQTI HM+EDDC D+G+PLPNV SKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVESP--KPEDRTGSV--DDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HVE+   K E   G+   DDDLK WD++F+K+DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CSPI02G16800 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 221.5 bits (563), Expect = 3.7e-58
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FE++EAVA++SQTIKHMIEDDCAD+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRTGSVD-DDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS + D+LK WDSEFVKVDQ TLFDLILAANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of CSPI02G16800 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-56
Identity = 109/156 (69.87%), Postives = 127/156 (81.41%), Query Frame = 1


Query: 3   SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKK 62
           S + I L SSDG+ FEV+EAVA++SQTI HM+EDDC   GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  H-VESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 122
           H V+   P       ++DL  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADM
Sbjct: 62  HHVDEANPIS-----EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 121

Query: 123 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CSPI02G16800 vs. TAIR10
Match: AT2G25700.1 (AT2G25700.1 SKP1-like 3)

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 5   RKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHV 64
           + I LKSSDGE FEV+EAVA+ESQTIKHMIEDDC D+GIPLPNV   IL+KVIEYCKKHV
Sbjct: 6   KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65  ESPKP----EDRTGSVDD-DLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 124
           E+       +D  GS ++ +LKTWD++FVKVD  TLFDL+ AANYLNI  LLDLTC+ VA
Sbjct: 66  EAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVA 125

Query: 125 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           D ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 126 DQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of CSPI02G16800 vs. NCBI nr
Match: gi|449450520|ref|XP_004143010.1| (PREDICTED: SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 6.0e-82
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. NCBI nr
Match: gi|659089095|ref|XP_008445323.1| (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.0e-81
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. NCBI nr
Match: gi|703095476|ref|XP_010095548.1| (SKP1-like protein 1B [Morus notabilis])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 145/157 (92.36%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK +DR  S DDDLK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVEAPKSDDRASSADDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. NCBI nr
Match: gi|1009108914|ref|XP_015887325.1| (PREDICTED: SKP1-like protein 1B [Ziziphus jujuba])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MSSGRKITLKSSDGE FEVDEAVALESQTIKHMIEDDCAD+GIPLPNV SKILSKVIEYC
Sbjct: 1   MSSGRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           +KHVE+PKP++R  SVDD+LK WD++FVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  RKHVEAPKPDERGSSVDDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

[Close]

BLAST of CSPI02G16800 vs. NCBI nr
Match: gi|255539024|ref|XP_002510577.1| (PREDICTED: SKP1-like protein 1B [Ricinus communis])

HSP 1 Score: 288.5 bits (737), Expect = 7.1e-75
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 1


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60
           MS+G+KITLKSSDGE FEV+E VALESQTIKHMIEDDCADSGIPLPNV SKILSKVIEYC
Sbjct: 1   MSAGKKITLKSSDGETFEVEELVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120
           KKHVE+PK EDR  S DDDLK WD+EFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD
Sbjct: 61  KKHVETPKSEDRPSSADDDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVAD 120

Query: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

The following BLAST results are available for this feature:

BLAST of CSPI02G16800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP1B_ARATH	1.8e-70	80.12	SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1	[more]
SKP1A_ARATH	2.3e-65	79.25	SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1	[more]
ASK4_ARATH	6.6e-57	71.52	SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1	[more]
ASK11_ARATH	6.2e-55	69.87	SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1	[more]
ASK3_ARATH	1.4e-54	68.35	SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1	[more]

BLAST of CSPI02G16800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK0_CUCSA	4.2e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346050 PE=3 SV=1	[more]
W9QZI9_9ROSA	7.6e-76	92.36	SKP1-like protein 1B OS=Morus notabilis GN=L484_016022 PE=3 SV=1	[more]
B9R8D4_RICCO	4.9e-75	91.72	Skp1, putative OS=Ricinus communis GN=RCOM_1598820 PE=3 SV=1	[more]
A0A067KYF6_JATCU	1.1e-74	90.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08180 PE=3 SV=1	[more]
B9R8D3_RICCO	1.1e-74	91.72	Skp1, putative OS=Ricinus communis GN=RCOM_1598810 PE=3 SV=1	[more]

BLAST of CSPI02G16800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42190.1	1.0e-71	80.12	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	1.3e-66	79.25	S phase kinase-associated protein 1	[more]
AT1G20140.1	3.7e-58	71.52	SKP1-like 4	[more]
AT4G34210.1	3.5e-56	69.87	SKP1-like 11	[more]
AT2G25700.1	7.8e-56	68.35	SKP1-like 3	[more]

BLAST of CSPI02G16800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450520\|ref\|XP_004143010.1\|	6.0e-82	100.00	PREDICTED: SKP1-like protein 1B [Cucumis sativus]	[more]
gi\|659089095\|ref\|XP_008445323.1\|	3.0e-81	99.36	PREDICTED: SKP1-like protein 1B [Cucumis melo]	[more]
gi\|703095476\|ref\|XP_010095548.1\|	1.1e-75	92.36	SKP1-like protein 1B [Morus notabilis]	[more]
gi\|1009108914\|ref\|XP_015887325.1\|	1.4e-75	91.72	PREDICTED: SKP1-like protein 1B [Ziziphus jujuba]	[more]
gi\|255539024\|ref\|XP_002510577.1\|	7.1e-75	91.72	PREDICTED: SKP1-like protein 1B [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001232	SKP1-like
IPR011333	SKP1/BTB/POZ_sf
IPR016072	Skp1_comp_dimer
IPR016073	Skp1_comp_POZ
IPR016897	SKP1

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016042	lipid catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016298	lipase activity
molecular_function	GO:0016635	oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16800.1	CSPI02G16800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..107 score: 2.3
IPR011333	SKP1/BTB/POZ domain	unknown	SSF54695	POZ domain	coord: 5..67 score: 1.02
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 108..155 score: 8.0
IPR016072	SKP1 component, dimerisation	unknown	SSF81382	Skp1 dimerisation domain-like	coord: 80..155 score: 2.75
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..64 score: 3.4
IPR016897	S-phase kinase-associated protein 1	PIR	PIRSF028729	SCF_Skp	coord: 1..157 score: 1.1
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 3..157 score: 7.6
None	No IPR available	PANTHER	PTHR11165	SKP1	coord: 1..157 score: 1.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G16800	Cla022402	Watermelon (97103) v1	cpiwmB117
CSPI02G16800	Csa2G346050	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G16800	MELO3C011345	Melon (DHL92) v3.5.1	cpimeB117
CSPI02G16800	ClCG08G014070	Watermelon (Charleston Gray)	cpiwcgB173
CSPI02G16800	Lsi08G012980	Bottle gourd (USVL1VR-Ls)	cpilsiB142
CSPI02G16800	MELO3C011345.2	Melon (DHL92) v3.6.1	cpimedB113
CSPI02G16800	CsaV3_2G024370	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G16800	Cla97C08G157640	Watermelon (97103) v2	cpiwmbB167
CSPI02G16800	Bhi04G000097	Wax gourd	cpiwgoB163
CSPI02G16800	Cucsa.393980	Cucumber (Gy14) v1	cgycpiB578
CSPI02G16800	CmaCh05G003240	Cucurbita maxima (Rimu)	cmacpiB797
CSPI02G16800	CmaCh12G003910	Cucurbita maxima (Rimu)	cmacpiB178
CSPI02G16800	CmoCh12G003410	Cucurbita moschata (Rifu)	cmocpiB163
CSPI02G16800	CmoCh05G003250	Cucurbita moschata (Rifu)	cmocpiB785
CSPI02G16800	Cp4.1LG07g03460	Cucurbita pepo (Zucchini)	cpecpiB825
CSPI02G16800	Cp4.1LG11g02740	Cucurbita pepo (Zucchini)	cpecpiB096
CSPI02G16800	CsGy2G016790	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G16800	Carg03976	Silver-seed gourd	carcpiB1013
CSPI02G16800	Carg09389	Silver-seed gourd	carcpiB0158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None