Cp4.1LG07g02330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g02330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDREB-like protein
LocationCp4.1LG07 : 1399919 .. 1400221 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCGCCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTCGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA

mRNA sequence

ATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCGCCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTCGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA

Coding sequence (CDS)

ATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCGCCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTCGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA

Protein sequence

MHNLSPNNIPTTTTTTDDASDASDELTEIVQLPSLGTAYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY
Homology
[Close]
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match: Q75UJ6_CUCME (DREB-like protein OS=Cucumis melo GN=CMe-DREB1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-20
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 1   MHNLSPN-NIPTTTTTTDDASDASDELTEIVQLPSLGTAYDG--DCGDSFVFLDYSTEDS 60
           MHNLS N N     T ++ +S  SDEL+EIV+LP+LGT+YDG    G  FVF++ S  +S
Sbjct: 126 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVE-SELES 185

Query: 61  AAWLYPPPWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 101
           AAWLY PPW+ SL EDYD+I  DG  G +GMGF+S  FKG L+DY
Sbjct: 186 AAWLYQPPWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229

[Close]
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match: A0A0A0LPS6_CUCSA (DREB-like protein OS=Cucumis sativus GN=Csa_2G374590 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-19
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 1   MHNLSPN-NIPTTTTTTDDASDASDELTEIVQLPSLGTAYDG--DCGDSFVFLDYSTEDS 60
           MHNLS N N     T ++ +S  SDEL+EIV+LP+LGT+YD     G  FVF++ S  +S
Sbjct: 128 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVE-SELES 187

Query: 61  AAWLYPPPWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 101
           AAWLYPPPW+ SL EDYD+   DG  G +GMGF+S  FKG L+DY
Sbjct: 188 AAWLYPPPWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match: W6FFW1_9ROSA (Dehydration responsive element binding transcription factor OS=Morus notabilis GN=DREB4D PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1 

Query: 1   MHNLSPNNIPTTTTTTDDASDA---------------SDELTEIVQLPSLGTAYD-GDCG 60
           MH L  +    T  TT  +S A               S+EL+EIV+LPSLGT+Y+  + G
Sbjct: 150 MHKLDGSQTAATAVTTTSSSSALLSASSSATTTSFVLSEELSEIVELPSLGTSYESAELG 209

Query: 61  DSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLW-DY 101
             FVF+D  +ED   W+YPPPWL S+ D++              IST F+GLLW DY
Sbjct: 210 TEFVFVD--SED--GWVYPPPWLQSVRDHE-------------LISTGFEGLLWSDY 249

[Close]
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match: A0A0D2Q9A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 18  DASDASDELTEIVQLPSLGTAYDG-DCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEI 77
           D S ASDELTEIV+LPSLGT+Y+  + G  F+F D        W YPPPWL S+ED + +
Sbjct: 186 DLSSASDELTEIVELPSLGTSYESVELGSEFIFAD----SMDGWFYPPPWLESMEDCEYV 243

Query: 78  QN 79
            N
Sbjct: 246 CN 243

[Close]
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match: A0A067KPE2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07721 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 1   MHNLSPNNIPTTTTTTDDASDASDELTEIVQLPSLGTAYD-GDCGDSFVFLDYSTEDSAA 60
           M + S +++ +  +  D ++ + +EL+EIV+LPSLGT+Y+  +    FVF+D        
Sbjct: 158 MSSASASSLSSLVSAMDLSTGSEEELSEIVELPSLGTSYEWTELSSDFVFVD----SVDG 217

Query: 61  WLYPPPWLPSLEDYDEIQNDGKMGMGM---GFISTNF-KGLLWDY 101
           W+YPPPW+ SLED      DG +   M     IS +F +GLLW+Y
Sbjct: 218 WVYPPPWVQSLED---SYGDGCLFDEMTVTNTISNSFEQGLLWEY 255

[Close]
BLAST of Cp4.1LG07g02330 vs. TAIR10
Match: AT5G11590.1 (AT5G11590.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 41/99 (41.41%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 5   SPNNIPTTTTTTDDASDASDELTEIVQLPSLGTAYDGD---CGDSFVFLDYSTEDSAAWL 64
           S +++ +     D +   S+EL EIV+LPSLG +YD D    G+ FVF  Y + D    L
Sbjct: 152 STSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF--YDSVDYC--L 211

Query: 65  YPPPWLPSLEDYDEIQNDGKMGMGMGFISTNF-KGLLWD 100
           YPPPW  S ED            G G IS NF  GL WD
Sbjct: 212 YPPPWGQSSED----------NYGHG-ISPNFGHGLSWD 235

[Close]
BLAST of Cp4.1LG07g02330 vs. TAIR10
Match: AT5G25810.1 (AT5G25810.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.0e-06
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 19  ASDASDELTEIVQLPSLGTAYDG--DCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEI 77
           ++  S+EL EIV+LPSLG++YDG    G+ F+F D     +  W YPP W  S  DY  I
Sbjct: 149 SATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD----SADLWPYPPQW--SEGDYQMI 202

[Close]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match: gi|985482321|ref|NP_001306241.1| (ethylene-responsive transcription factor TINY-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 7.0e-20
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 1   MHNLSPN-NIPTTTTTTDDASDASDELTEIVQLPSLGTAYDG--DCGDSFVFLDYSTEDS 60
           MHNLS N N     T ++ +S  SDEL+EIV+LP+LGT+YDG    G  FVF++ S  +S
Sbjct: 126 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVE-SELES 185

Query: 61  AAWLYPPPWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 101
           AAWLY PPW+ SL EDYD+I  DG  G +GMGF+S  FKG L+DY
Sbjct: 186 AAWLYQPPWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229

[Close]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match: gi|778672054|ref|XP_004150289.2| (PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-19
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 1   MHNLSPN-NIPTTTTTTDDASDASDELTEIVQLPSLGTAYDG--DCGDSFVFLDYSTEDS 60
           MHNLS N N     T ++ +S  SDEL+EIV+LP+LGT+YD     G  FVF++ S  +S
Sbjct: 128 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVE-SELES 187

Query: 61  AAWLYPPPWLPSL-EDYDEIQNDGKMG-MGMGFISTNFKGLLWDY 101
           AAWLYPPPW+ SL EDYD+   DG  G +GMGF+S  FKG L+DY
Sbjct: 188 AAWLYPPPWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match: gi|823229144|ref|XP_012447312.1| (PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimondii])

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 18  DASDASDELTEIVQLPSLGTAYDG-DCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEI 77
           D S ASDELTEIV+LPSLGT+Y+  + G  F+F D        W YPPPWL S+ED + +
Sbjct: 186 DLSSASDELTEIVELPSLGTSYESVELGSEFIFAD----SMDGWFYPPPWLESMEDCEYV 245

Query: 78  QNDGKMGMGMGFISTNFK-GLLWDY 101
            N  ++ +    +   FK GLLWDY
Sbjct: 246 CN--QLVVPESVLQNGFKQGLLWDY 264

[Close]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match: gi|470109809|ref|XP_004291182.1| (PREDICTED: dehydration-responsive element-binding protein 3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 1 

Query: 5   SPNNIPTTTTTTDDASDASDELTEIVQLPSLGTAYDG-DCGDSFVFLDYSTEDSAAWLYP 64
           S +++ +  +  D+ S  S+EL+EIV+LPSLGT+Y+  +    FVF+D + ++   W+YP
Sbjct: 164 SSSSLSSLVSAIDNLSTESEELSEIVELPSLGTSYESYELRSEFVFVDSADDE---WVYP 223

Query: 65  PPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY 101
           PPWL  + D   +   G  G+G    ST F+GLLWDY
Sbjct: 224 PPWLQQMGDCG-VYVCG--GLGSSANSTGFEGLLWDY 254

[Close]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match: gi|703121669|ref|XP_010102390.1| (Dehydration-responsive element-binding protein 3 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1 

Query: 1   MHNLSPNNIPTTTTTTDDASDA---------------SDELTEIVQLPSLGTAYD-GDCG 60
           MH L  +    T  TT  +S A               S+EL+EIV+LPSLGT+Y+  + G
Sbjct: 150 MHKLDGSQTAATAVTTTSSSSALLSASSSATTTSFVLSEELSEIVELPSLGTSYESAELG 209

Query: 61  DSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLW-DY 101
             FVF+D  +ED   W+YPPPWL S+ D++              IST F+GLLW DY
Sbjct: 210 TEFVFVD--SED--GWVYPPPWLQSVRDHE-------------LISTGFEGLLWSDY 249

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g02330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g02330 vs. TrEMBL
Match NameE-valueIdentityDescription
Q75UJ6_CUCME4.9e-2056.19DREB-like protein OS=Cucumis melo GN=CMe-DREB1 PE=2 SV=1[more]
A0A0A0LPS6_CUCSA4.1e-1955.24DREB-like protein OS=Cucumis sativus GN=Csa_2G374590 PE=4 SV=1[more]
W6FFW1_9ROSA2.3e-0940.17Dehydration responsive element binding transcription factor OS=Morus notabilis G... [more]
A0A0D2Q9A2_GOSRA1.1e-0853.23Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050200 PE=4 SV=1[more]
A0A067KPE2_JATCU3.6e-0738.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07721 PE=4 SV=1[more]
BLAST of Cp4.1LG07g02330 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11590.11.6e-0641.41 Integrase-type DNA-binding superfamily protein[more]
AT5G25810.18.0e-0645.00 Integrase-type DNA-binding superfamily protein[more]
BLAST of Cp4.1LG07g02330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985482321|ref|NP_001306241.1|7.0e-2056.19ethylene-responsive transcription factor TINY-like [Cucumis melo][more]
gi|778672054|ref|XP_004150289.2|5.9e-1955.24PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus][more]
gi|823229144|ref|XP_012447312.1|2.7e-1148.24PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimond... [more]
gi|470109809|ref|XP_004291182.1|1.5e-0941.24PREDICTED: dehydration-responsive element-binding protein 3-like [Fragaria vesca... [more]
gi|703121669|ref|XP_010102390.1|3.3e-0940.17Dehydration-responsive element-binding protein 3 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g02330.1Cp4.1LG07g02330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g02330CmaCh12G002530Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g02330CmoCh12G002060Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g02330MELO3C011143.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g02330CsaV3_2G030880Cucumber (Chinese Long) v3cpecucB1004
Cp4.1LG07g02330Bhi04G000696Wax gourdcpewgoB1043
Cp4.1LG07g02330CsGy2G022020Cucumber (Gy14) v2cgybcpeB260
Cp4.1LG07g02330Carg03844Silver-seed gourdcarcpeB1368
Cp4.1LG07g02330Carg08281Silver-seed gourdcarcpeB0087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g02330Cucurbita pepo (Zucchini)cpecpeB138
Cp4.1LG07g02330Cucurbita pepo (Zucchini)cpecpeB511
Cp4.1LG07g02330Cucumber (Gy14) v1cgycpeB0444
Cp4.1LG07g02330Cucurbita maxima (Rimu)cmacpeB794
Cp4.1LG07g02330Cucurbita moschata (Rifu)cmocpeB747
Cp4.1LG07g02330Wild cucumber (PI 183967)cpecpiB811
Cp4.1LG07g02330Cucumber (Chinese Long) v2cpecuB810
Cp4.1LG07g02330Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g02330Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g02330Watermelon (97103) v1cpewmB782
Cp4.1LG07g02330Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g02330Cucumber (Gy14) v2cgybcpeB440
Cp4.1LG07g02330Melon (DHL92) v3.6.1cpemedB906
Cp4.1LG07g02330Silver-seed gourdcarcpeB0907
Cp4.1LG07g02330Cucumber (Chinese Long) v3cpecucB1020
Cp4.1LG07g02330Wax gourdcpewgoB1059