Cp4.1LG06g04230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g04230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG06 : 2609256 .. 2611416 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATAGTCTCCTCCTACTTTCTCGCCCCTCTCTCACTCACGCTCTTCCCACGCTGCTGGCAGTGCTCTCTGGCGAGACCTCCTCACTCCATTGCGCCGCCTCAACGACGCCGCCTCGGTGCCGGTGACGTGCCTCGTCGACTTTCCATCGCTCACCGTCGCAGCTATCAGGTAATCTCTCTCGCTCCAATGTTCTCTCGATCGATTCCATTTCTTTCTCTTTTAGACATGAAGGATCGATTTCCGGTTTGGAAAAAGAAAAAAGGAAAAAAATTCGAAGGAATCGAACTGATCATCGCCCCTACTCACTTGGAAGAGAAGAAGAAACAGGAAAGCAAATTACAGGATTTGTCTCCTTTGTTTTCCCCCTTTTTGAGTTCAGCGTGTGAGAAATTCGAATTTCTTTATGATTTTGCTTGAATCTGTCATTTCTAAAGCGTTATTCCTATGGAATTCATGATAGATGTAAAAAAAAACGTGTAGGATTAGCAAGCTTATGGATTGGTTTGTATAGATACAGTGCACGTTTTGATTGTTCAGGAAGTTTTTTGTTCTTCCTAACCTATTTTTCTCTCTAATTTTCCATCTTAGATGATATCGGCATTTAGCAGATTTTGATGAATATTGCGGCCTTGTCCTCTCTTCTGTCTATACATACGCCTGCGGTTTCCTGGATTTCATGAATATTGTTTGGATTTCAAAAGCAATAATCTCCAAGAGGAATAGTCCTACCAGACTCTTTACTACCTCCATAGAAGCTCAGAAGAAATCCAAATCCAGTTACATTTCTCACGAAACAGCCATAAGGTTAATAAAAAATGAAAGAGATCCTCAACATGCGCTTGAAATATTCAACATGGTGTCAGAGCAAAAAGGCTTTAATCACAATAACGCCACTTATGGAGGCATTCTTCAAAGGCTTGCAAAATCGAAGAAATTCCAGGCTATTGATGGAGTTCTGCATCAAATGACATATGACACTTGCAAATTACACGAGGGTATATTCCTTAATCTCATGAAGCATTATTCAAAGTCTTCTATGCACGAAAGAGTGCTTGACATGTTTTATGCTATCCAGTCGATTGTTCGTCAAAAGCCTTCTCTTAAAGCGATCAGCACGTGTCTCAATCTTCTAGTCGAAAACGACCGGGTTGATCTAGCCAGGAAATTGCTTGTAAATGCTAGTAGCAAGCTCAACTTAATACCAAATACTTGCATTTTCAACATTTTAGTTAAGCATCATTGCAGAAATGGAAATCTTCAAGCTGCATTTGAGGTTGTAAGGGAAATGAAAAGTGCTAGAGTCTCTTATCCTAATCTCATCACCTATTCAACTCTGATAGGTGGCCTTTGTCAAAGTGGAAAACTTAAAGAAGCCATTGAACTTTTTGAGAACATGGTTTCAAAGGACAAGATTTTGCCTGATGCCTTGACTTACAATATTTTGATCAACGGCTTTTGTCAAGGAGGGAAGGTCGACCGTGCAAGGAAAATAGTCGAGTTCATGAAAAGCAATGGATGCAGTCCTAACGTATTCAATTACTCAGTCTTAATGAATGGCTTCTGTAAAGAAGGGAAATTGCAAGAGGCAAAGGAGGTTTTTGATGAAATGAAGAGCCTCGGGATGAAGCCCGATACGGTCAGCTACACCACCTTAATGAACTGCCTATGTAGAACTGGAAGGGTCGACGAGGCTAATGAGTTACTCCAGCAAATGAAGGACCAAGATTGCAGGGCCGATGTGGTAACATTGAATGTGATCCTTGGAGGTCTATGCCGAGAAGGCAGGTTCGAAGAGGCTCTCGATATGGTGCAGAAACTTCCCTTTGAGGGTTACTATTTGAACAAAGGAAGTTACAGAATTGTGTTGAATTTCCTGTCTCAAAAGGGAGAATTGAAAAGGGCTACTGAGTTATTGGGTCTAATGTTAAATAGGGGATTTGTACCTCACTATGCAACTTCTAATAGTCTGTTGGTTCTTCTGTGTAACAGTGGAATGGTGAAGGACGCAGTAGAATCTTTGGTTGGGCTGTTGGAGATGGGCTTCAAACCTGAGCCTGATTCTTGGTTTTCTTTGGTTGATTTGATCTGCAGGGAGAAGAAACTGCTGCCTGTGTTTGAATTGCTTGATGAGTTGATTGCTGAAGAACATTTAAAT

mRNA sequence

ATGTCTATAGTCTCCTCCTACTTTCTCGCCCCTCTCTCACTCACGCTCTTCCCACGCTGCTGGCAGTGCTCTCTGGCGAGACCTCCTCACTCCATTGCGCCGCCTCAACGACGCCGCCTCGGTGCCGGTGACGTGCCTCGTCGACTTTCCATCGCTCACCGTCGCAGCTATCAGCGTTATTCCTATGGAATTCATGATAGATGTAAAAAAAAACGTGTAGGATTAGCAAGCTTATGGATTGATTTTGATGAATATTGCGGCCTTGTCCTCTCTTCTGTCTATACATACGCCTGCGGTTTCCTGGATTTCATGAATATTGTTTGGATTTCAAAAGCAATAATCTCCAAGAGGAATAGTCCTACCAGACTCTTTACTACCTCCATAGAAGCTCAGAAGAAATCCAAATCCAGTTACATTTCTCACGAAACAGCCATAAGGTTAATAAAAAATGAAAGAGATCCTCAACATGCGCTTGAAATATTCAACATGGTGTCAGAGCAAAAAGGCTTTAATCACAATAACGCCACTTATGGAGGCATTCTTCAAAGGCTTGCAAAATCGAAGAAATTCCAGGCTATTGATGGAGTTCTGCATCAAATGACATATGACACTTGCAAATTACACGAGGGTATATTCCTTAATCTCATGAAGCATTATTCAAAGTCTTCTATGCACGAAAGAGTGCTTGACATGTTTTATGCTATCCAGTCGATTGTTCGTCAAAAGCCTTCTCTTAAAGCGATCAGCACGTGTCTCAATCTTCTAGTCGAAAACGACCGGGTTGATCTAGCCAGGAAATTGCTTGTAAATGCTAGTAGCAAGCTCAACTTAATACCAAATACTTGCATTTTCAACATTTTAGTTAAGCATCATTGCAGAAATGGAAATCTTCAAGCTGCATTTGAGGTTGTAAGGGAAATGAAAAGTGCTAGAGTCTCTTATCCTAATCTCATCACCTATTCAACTCTGATAGGTGGCCTTTGTCAAAGTGGAAAACTTAAAGAAGCCATTGAACTTTTTGAGAACATGGTTTCAAAGGACAAGATTTTGCCTGATGCCTTGACTTACAATATTTTGATCAACGGCTTTTGTCAAGGAGGGAAGGTCGACCGTGCAAGGAAAATAGTCGAGTTCATGAAAAGCAATGGATGCAGTCCTAACGTATTCAATTACTCAGTCTTAATGAATGGCTTCTGTAAAGAAGGGAAATTGCAAGAGGCAAAGGAGGTTTTTGATGAAATGAAGAGCCTCGGGATGAAGCCCGATACGGTCAGCTACACCACCTTAATGAACTGCCTATGTAGAACTGGAAGGGTCGACGAGGCTAATGAGTTACTCCAGCAAATGAAGGACCAAGATTGCAGGGCCGATGTGGTAACATTGAATGTGATCCTTGGAGGTCTATGCCGAGAAGGCAGGTTCGAAGAGGCTCTCGATATGGTGCAGAAACTTCCCTTTGAGGGTTACTATTTGAACAAAGGAAGTTACAGAATTGTGTTGAATTTCCTGTCTCAAAAGGGAGAATTGAAAAGGGCTACTGAGTTATTGGGTCTAATGTTAAATAGGGGATTTGTACCTCACTATGCAACTTCTAATAGTCTGTTGGTTCTTCTGTGTAACAGTGGAATGGTGAAGGACGCAGTAGAATCTTTGGTTGGGCTGTTGGAGATGGGCTTCAAACCTGAGCCTGATTCTTGGTTTTCTTTGGTTGATTTGATCTGCAGGGAGAAGAAACTGCTGCCTGTGTTTGAATTGCTTGATGAGTTGATTGCTGAAGAACATTTAAAT

Coding sequence (CDS)

ATGTCTATAGTCTCCTCCTACTTTCTCGCCCCTCTCTCACTCACGCTCTTCCCACGCTGCTGGCAGTGCTCTCTGGCGAGACCTCCTCACTCCATTGCGCCGCCTCAACGACGCCGCCTCGGTGCCGGTGACGTGCCTCGTCGACTTTCCATCGCTCACCGTCGCAGCTATCAGCGTTATTCCTATGGAATTCATGATAGATGTAAAAAAAAACGTGTAGGATTAGCAAGCTTATGGATTGATTTTGATGAATATTGCGGCCTTGTCCTCTCTTCTGTCTATACATACGCCTGCGGTTTCCTGGATTTCATGAATATTGTTTGGATTTCAAAAGCAATAATCTCCAAGAGGAATAGTCCTACCAGACTCTTTACTACCTCCATAGAAGCTCAGAAGAAATCCAAATCCAGTTACATTTCTCACGAAACAGCCATAAGGTTAATAAAAAATGAAAGAGATCCTCAACATGCGCTTGAAATATTCAACATGGTGTCAGAGCAAAAAGGCTTTAATCACAATAACGCCACTTATGGAGGCATTCTTCAAAGGCTTGCAAAATCGAAGAAATTCCAGGCTATTGATGGAGTTCTGCATCAAATGACATATGACACTTGCAAATTACACGAGGGTATATTCCTTAATCTCATGAAGCATTATTCAAAGTCTTCTATGCACGAAAGAGTGCTTGACATGTTTTATGCTATCCAGTCGATTGTTCGTCAAAAGCCTTCTCTTAAAGCGATCAGCACGTGTCTCAATCTTCTAGTCGAAAACGACCGGGTTGATCTAGCCAGGAAATTGCTTGTAAATGCTAGTAGCAAGCTCAACTTAATACCAAATACTTGCATTTTCAACATTTTAGTTAAGCATCATTGCAGAAATGGAAATCTTCAAGCTGCATTTGAGGTTGTAAGGGAAATGAAAAGTGCTAGAGTCTCTTATCCTAATCTCATCACCTATTCAACTCTGATAGGTGGCCTTTGTCAAAGTGGAAAACTTAAAGAAGCCATTGAACTTTTTGAGAACATGGTTTCAAAGGACAAGATTTTGCCTGATGCCTTGACTTACAATATTTTGATCAACGGCTTTTGTCAAGGAGGGAAGGTCGACCGTGCAAGGAAAATAGTCGAGTTCATGAAAAGCAATGGATGCAGTCCTAACGTATTCAATTACTCAGTCTTAATGAATGGCTTCTGTAAAGAAGGGAAATTGCAAGAGGCAAAGGAGGTTTTTGATGAAATGAAGAGCCTCGGGATGAAGCCCGATACGGTCAGCTACACCACCTTAATGAACTGCCTATGTAGAACTGGAAGGGTCGACGAGGCTAATGAGTTACTCCAGCAAATGAAGGACCAAGATTGCAGGGCCGATGTGGTAACATTGAATGTGATCCTTGGAGGTCTATGCCGAGAAGGCAGGTTCGAAGAGGCTCTCGATATGGTGCAGAAACTTCCCTTTGAGGGTTACTATTTGAACAAAGGAAGTTACAGAATTGTGTTGAATTTCCTGTCTCAAAAGGGAGAATTGAAAAGGGCTACTGAGTTATTGGGTCTAATGTTAAATAGGGGATTTGTACCTCACTATGCAACTTCTAATAGTCTGTTGGTTCTTCTGTGTAACAGTGGAATGGTGAAGGACGCAGTAGAATCTTTGGTTGGGCTGTTGGAGATGGGCTTCAAACCTGAGCCTGATTCTTGGTTTTCTTTGGTTGATTTGATCTGCAGGGAGAAGAAACTGCTGCCTGTGTTTGAATTGCTTGATGAGTTGATTGCTGAAGAACATTTAAAT

Protein sequence

MSIVSSYFLAPLSLTLFPRCWQCSLARPPHSIAPPQRRRLGAGDVPRRLSIAHRRSYQRYSYGIHDRCKKKRVGLASLWIDFDEYCGLVLSSVYTYACGFLDFMNIVWISKAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFELLDELIAEEHLN
Homology
[Close]
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match: PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 2.3e-158
Identity = 273/486 (56.17%), Postives = 357/486 (73.46%), Query Frame = 1 

Query: 108 WISKAIIS-KRNSPTRLFTTSIE-AQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVS 167
           W+S    S K+  P+    +SI   +   K+ +ISHE+A+ L+K ERDPQ  L+IFN  S
Sbjct: 21  WVSPICFSEKKKKPSPPPESSISPVETNPKTKFISHESAVSLMKRERDPQGVLDIFNKAS 80

Query: 168 EQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMH 227
           +QKGFNHNNATY  +L  L + KKF A+D +LHQM Y+TC+  E +FLNLM+H+S+S +H
Sbjct: 81  QQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLH 140

Query: 228 ERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFN 287
           ++V++MF  IQ I R KPSL AISTCLNLL+++  V+L+RKLL+ A   L L PNTCIFN
Sbjct: 141 DKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 200

Query: 288 ILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVS 347
           ILVKHHC+NG++  AF VV EMK + +SYPN ITYSTL+  L    + KEA+ELFE+M+S
Sbjct: 201 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMIS 260

Query: 348 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQ 407
           K+ I PD +T+N++INGFC+ G+V+RA+KI++FMK NGC+PNV+NYS LMNGFCK GK+Q
Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQ 320

Query: 408 EAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVIL 467
           EAK+ FDE+K  G+K DTV YTTLMNC CR G  DEA +LL +MK   CRAD +T NVIL
Sbjct: 321 EAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVIL 380

Query: 468 GGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFV 527
            GL  EGR EEAL M+ +   EG +LNKGSYRI+LN L   GEL++A + L +M  RG  
Sbjct: 381 RGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIW 440

Query: 528 PHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFEL 587
           PH+AT N L+V LC SG  +  V  L+G L +G  P P SW ++V+ IC+E+KL+ VFEL
Sbjct: 441 PHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFEL 500

Query: 588 LDELIA 592
           LD L++
Sbjct: 501 LDSLVS 506

[Close]
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match: PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-56
Identity = 129/430 (30.00%), Postives = 232/430 (53.95%), Query Frame = 1 

Query: 145 IRLIKNERDPQHALEIFNMVSEQK-GFNHNNATYGGILQRLAKSKKFQAIDGVLHQM--T 204
           + +I  +++   AL+IF    +   GF HN  TY  IL +L++++ F  ++ ++  +  +
Sbjct: 53  VSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNS 112

Query: 205 YDTCKLHEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRV 264
           Y   K  E +F++L+++Y  +  +E  + +F  I      K S+++++T LN+L++N R 
Sbjct: 113 YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDF-GVKRSVRSLNTLLNVLIQNQRF 172

Query: 265 DLARKLLVNASSKLNLIPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYS 324
           DL   +  N+     + PN    N+LVK  C+  ++++A++V+ E+ S  +  PNL+TY+
Sbjct: 173 DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL-VPNLVTYT 232

Query: 325 TLIGGLCQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKS 384
           T++GG    G ++ A  + E M+ +    PDA TY +L++G+C+ G+   A  +++ M+ 
Sbjct: 233 TILGGYVARGDMESAKRVLEEMLDRG-WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 292

Query: 385 NGCSPNVFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDE 444
           N   PN   Y V++   CKE K  EA+ +FDEM      PD+     +++ LC   +VDE
Sbjct: 293 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 352

Query: 445 ANELLQQMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLN 504
           A  L ++M   +C  D   L+ ++  LC+EGR  EA  +  +   +G   +  +Y  ++ 
Sbjct: 353 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIA 412

Query: 505 FLSQKGELKRATELLGLMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKP 564
            + +KGEL  A  L   M  R   P+  T N L+  L  +G VK+ V  L  +LE+G  P
Sbjct: 413 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 472

Query: 565 EPDSWFSLVD 572
              ++  L +
Sbjct: 473 NKTTFLILFE 478

[Close]
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-56
Identity = 140/460 (30.43%), Postives = 237/460 (51.52%), Query Frame = 1 

Query: 136 SSYISHETAIRLIKNERDPQHALEIFNMVSEQ--KGFNHNNATYGGILQRLAKSKKFQAI 195
           S  I+    I+L++ E+D + ++ +F+  + +   G+ H+ +++G ++ RL  + KF+A 
Sbjct: 11  SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAA 70

Query: 196 DGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLN 255
           + ++ +M  + C + E I L++ + Y +       L +F+ ++      PS KA  T L 
Sbjct: 71  EDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCD-PSQKAYVTVLA 130

Query: 256 LLVENDRVDLARKLLVNASSKLNLIPNTCIFNILVKHHCRN-GNLQAAFEVVREMKSARV 315
           +LVE ++++LA K   N   ++ L P     N+L+K  CRN G + A  ++  EM   R 
Sbjct: 131 ILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPK-RG 190

Query: 316 SYPNLITYSTLIGGLCQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRA 375
             P+  TY TLI GLC+ G++ EA +LF  MV KD   P  +TY  LING C    VD A
Sbjct: 191 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD-CAPTVVTYTSLINGLCGSKNVDEA 250

Query: 376 RKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNC 435
            + +E MKS G  PNVF YS LM+G CK+G+  +A E+F+ M + G +P+ V+YTTL+  
Sbjct: 251 MRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 310

Query: 436 LCRTGRVDEANELLQQMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLN 495
           LC+  ++ EA ELL +M  Q  + D      ++ G C   +F EA + + ++   G   N
Sbjct: 311 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPN 370

Query: 496 KGSYRIVLNFLSQKGELKRATELLGLMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLV 555
           + ++ I                            H  TSN ++  LC +     A    +
Sbjct: 371 RLTWNI----------------------------HVKTSNEVVRGLC-ANYPSRAFTLYL 430

Query: 556 GLLEMGFKPEPDSWFSLVDLICREKKLLPVFELLDELIAE 593
            +   G   E ++  SLV  +C++ +     +L+DE++ +
Sbjct: 431 SMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTD 437

[Close]
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-55
Identity = 109/316 (34.49%), Postives = 188/316 (59.49%), Query Frame = 1 

Query: 278 IPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAI 337
           +P+   +N+++  +C+ G +  A  V+  M  +    P+++TY+T++  LC SGKLK+A+
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAM 228

Query: 338 ELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNG 397
           E+ + M+ +D   PD +TY ILI   C+   V  A K+++ M+  GC+P+V  Y+VL+NG
Sbjct: 229 EVLDRMLQRD-CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG 288

Query: 398 FCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRAD 457
            CKEG+L EA +  ++M S G +P+ +++  ++  +C TGR  +A +LL  M  +     
Sbjct: 289 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 348

Query: 458 VVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLG 517
           VVT N+++  LCR+G    A+D+++K+P  G   N  SY  +L+   ++ ++ RA E L 
Sbjct: 349 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 408

Query: 518 LMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREK 577
            M++RG  P   T N++L  LC  G V+DAVE L  L   G  P   ++ +++D + +  
Sbjct: 409 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 468

Query: 578 KLLPVFELLDELIAEE 594
           K     +LLDE+ A++
Sbjct: 469 KTGKAIKLLDEMRAKD 479

[Close]
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match: PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-55
Identity = 124/409 (30.32%), Postives = 230/409 (56.23%), Query Frame = 1 

Query: 148 IKNERDPQHALEIFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKL 207
           +K   DP+ AL +F+   E  GF H+  +Y  ++ +LAKS+ F A+D +L  + Y   + 
Sbjct: 56  LKEIEDPEEALSLFHQYQEM-GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRC 115

Query: 208 HEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKL 267
            E +F+ L++HY K+   ++ +D+F+ I S    + ++++++T +N+LV+N  ++ A K 
Sbjct: 116 RESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVR-TIQSLNTLINVLVDNGELEKA-KS 175

Query: 268 LVNASSKLNLIPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGL 327
             + +  + L PN+  FNIL+K      + +AA +V  EM    V  P+++TY++LIG L
Sbjct: 176 FFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQ-PSVVTYNSLIGFL 235

Query: 328 CQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPN 387
           C++  + +A  L E+M+ K +I P+A+T+ +L+ G C  G+ + A+K++  M+  GC P 
Sbjct: 236 CRNDDMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPG 295

Query: 388 VFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQ 447
           + NY +LM+   K G++ EAK +  EMK   +KPD V Y  L+N LC   RV EA  +L 
Sbjct: 296 LVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLT 355

Query: 448 QMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKG 507
           +M+ + C+ +  T  +++ G CR   F+  L+++  +    +     ++  ++  L + G
Sbjct: 356 EMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGG 415

Query: 508 ELKRATELLGLMLNRGFVPHYATSNSLLVLLC--NSGMVKDAVESLVGL 555
            L  A  +L +M  +          +LL  LC  + G+  +A+  ++ +
Sbjct: 416 NLDHACFVLEVMGKKNLSFGSGAWQNLLSDLCIKDGGVYCEALSEVISI 459

[Close]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match: A0A0A0LGW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890050 PE=4 SV=1)

HSP 1 Score: 863.6 bits (2230), Expect = 1.4e-247
Identity = 421/490 (85.92%), Postives = 465/490 (94.90%), Query Frame = 1 

Query: 106 IVWISKAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVS 165
           I W+SK +ISK N+  RLF TS E QKKSKSSYISHETAI+LIKNERDPQHAL+IFNMVS
Sbjct: 15  IGWVSKTVISKSNTSIRLFATSKEIQKKSKSSYISHETAIKLIKNERDPQHALDIFNMVS 74

Query: 166 EQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMH 225
           EQ+GFNHN+ATY  I+Q LAK KKFQAIDGVLHQMTYDTCK+HEGIFLNLMKH+SKSSMH
Sbjct: 75  EQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMH 134

Query: 226 ERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFN 285
           ERVLDMFYAI+SIVR+KPSLKAISTCLNLLVE+DRVDLARKLLVNA SKLNL PNTCIFN
Sbjct: 135 ERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFN 194

Query: 286 ILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVS 345
           ILVKHHCRNG+LQAAFEVV+EMKSARVSYPNL+TYSTLIGGLC++GKLKEAIE FE MVS
Sbjct: 195 ILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVS 254

Query: 346 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQ 405
           KD ILPDALTYNILINGFCQ GKVDRAR I+EFMKSNGCSPNVFNYSVLMNG+CKEG+LQ
Sbjct: 255 KDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQ 314

Query: 406 EAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVIL 465
           EAKEVF+E+KSLGMKPDT+SYTTL+NCLCRTGRVDEA ELLQQMKD+DCRAD VT NV+L
Sbjct: 315 EAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVML 374

Query: 466 GGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFV 525
           GGLCREGRF+EALDMVQKLPFEG+YLNKGSYRIVLNFL+QKGEL++ATELLGLMLNRGFV
Sbjct: 375 GGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFV 434

Query: 526 PHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFEL 585
           PH+ATSN+LL+LLCN+GMVKDAVESL+GLLEMGFKPE +SWF+LVDLICRE+K+LPVFEL
Sbjct: 435 PHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFEL 494

Query: 586 LDELIAEEHL 596
           LD L+ +E+L
Sbjct: 495 LDVLVTQEYL 504

[Close]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match: A0A061GZH5_THECC (Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_041049 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 8.0e-203
Identity = 345/491 (70.26%), Postives = 420/491 (85.54%), Query Frame = 1 

Query: 108 WIS-----KAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFN 167
           WIS     KA   KR+ P  +  T  E+Q+K +  ++SHETAI LIK ERDPQ ALEIFN
Sbjct: 26  WISPLQFLKANSQKRDPPPEIPYTLTESQRKPR--FVSHETAINLIKRERDPQRALEIFN 85

Query: 168 MVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKS 227
            VSEQKGF+HNNATYG IL +L +SKKFQAID +L QMTY+TCK HEG+FLNLMKH+SK 
Sbjct: 86  RVSEQKGFSHNNATYGTILHKLVQSKKFQAIDSILRQMTYETCKFHEGVFLNLMKHFSKF 145

Query: 228 SMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTC 287
           S+H+RVL+MFYAIQ IVR+KPSLKAISTCLNLL+E+++VDLAR  L+N+   L L PNTC
Sbjct: 146 SLHDRVLEMFYAIQPIVREKPSLKAISTCLNLLIESNQVDLARHFLLNSKKSLRLRPNTC 205

Query: 288 IFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFEN 347
           IFNILVKHHC+NG+L++AFEVV+EMK +RVSYPNLITYSTL+GGLC+SG+LKEAIELFE 
Sbjct: 206 IFNILVKHHCKNGDLESAFEVVKEMKKSRVSYPNLITYSTLMGGLCESGRLKEAIELFEE 265

Query: 348 MVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEG 407
           MV+KD+ILPD LTYNILINGFC  GKVDRARKI+EFMK+NGC+PN+FNYS L+NGFCKEG
Sbjct: 266 MVAKDQILPDVLTYNILINGFCCRGKVDRARKIMEFMKNNGCNPNLFNYSTLINGFCKEG 325

Query: 408 KLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLN 467
           + QEAKEVF EM+S+G+KPDT+ YTTL+NCLCR  +++EA ELL++MK+++C+ADVVTLN
Sbjct: 326 RWQEAKEVFVEMESIGLKPDTIGYTTLINCLCRAAQIEEAMELLKEMKEKECQADVVTLN 385

Query: 468 VILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNR 527
           V+LGGLCREGRF++AL M++KLP+EG YLNK SYRIVLN L QK E+++A +L+GLML+R
Sbjct: 386 VLLGGLCREGRFQDALQMLEKLPYEGVYLNKASYRIVLNSLCQKDEMEKAAKLVGLMLDR 445

Query: 528 GFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPV 587
           GFVPHYATSN LL+ LC +GMV DAV +LVGL E GFKPEP  W  L +L C+E+KLL V
Sbjct: 446 GFVPHYATSNDLLIRLCKAGMVDDAVTALVGLAETGFKPEPHCWEFLTELNCKERKLLSV 505

Query: 588 FELLDELIAEE 594
           FELLDEL+ +E
Sbjct: 506 FELLDELVIKE 514

[Close]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match: F6H114_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07250 PE=4 SV=1)

HSP 1 Score: 712.2 bits (1837), Expect = 5.2e-202
Identity = 352/495 (71.11%), Postives = 412/495 (83.23%), Query Frame = 1 

Query: 105 NIVWISKAIISKRNSP------TRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHAL 164
           ++ WIS        SP      T   TT +E +KK K  +ISHE+AI LIK E DPQ AL
Sbjct: 54  SLPWISPLQYLNATSPKPDPPATEATTTMVEPRKKPK--FISHESAINLIKRETDPQRAL 113

Query: 165 EIFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKH 224
           EIFN V+EQ+GF+HNNATY  IL +LAKSKKFQAID VLHQMTY+TCK HEGIFLNLMKH
Sbjct: 114 EIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKH 173

Query: 225 YSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLI 284
           +SK S+HERV++MF AI+ IVR+KPSLKAISTCLNLLVE+++VDL RK L+N+   LNL 
Sbjct: 174 FSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLE 233

Query: 285 PNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIE 344
           PNTCIFNILVKHHC+NG++ +AFEVV EMK + VSYPNLITYSTLI GLC SG+LKEAIE
Sbjct: 234 PNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 293

Query: 345 LFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGF 404
           LFE MVSKD+ILPDALTYN LINGFC G KVDRA KI+EFMK NGC+PNVFNYS LMNGF
Sbjct: 294 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 353

Query: 405 CKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADV 464
           CKEG+L+EAKEVFDEMKSLG+KPDTV YTTL+N  CR GRVDEA ELL+ M++  CRAD 
Sbjct: 354 CKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADT 413

Query: 465 VTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGL 524
           VT NVILGGLCREGRFEEA  M+++LP+EG YLNK SYRIVLN L ++GEL++AT+L+GL
Sbjct: 414 VTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGL 473

Query: 525 MLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKK 584
           ML RG +PH+ATSN LLV LC +G V DAV +L+GLLE+GFKPEP+SW  LV+LICRE+K
Sbjct: 474 MLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERK 533

Query: 585 LLPVFELLDELIAEE 594
           LLP FELLD+L+ +E
Sbjct: 534 LLPAFELLDDLVIQE 546

[Close]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match: W9RXH4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007723 PE=4 SV=1)

HSP 1 Score: 699.1 bits (1803), Expect = 4.6e-198
Identity = 345/484 (71.28%), Postives = 405/484 (83.68%), Query Frame = 1 

Query: 107 VWISKAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVSE 166
           V +SKA   K + PT    +S+E ++K+K  YISH+TAI LIK ERDPQ ALEIFN VSE
Sbjct: 31  VQLSKASSKKPDPPTESIASSLEGRRKAK--YISHDTAINLIKRERDPQRALEIFNSVSE 90

Query: 167 QKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMHE 226
           QKGFNHN  TY  IL +LA SKKF AID +L QM Y+TCK HE IFLNLMKH+SK ++HE
Sbjct: 91  QKGFNHNGDTYSTILHKLALSKKFGAIDAILRQMMYETCKFHEPIFLNLMKHFSKYALHE 150

Query: 227 RVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFNI 286
           +VL+MF+AI+SI R+KPSLKAISTCLNLLVE +R+DLAR+ L+++   L+L PNTCIFNI
Sbjct: 151 KVLEMFHAIRSIAREKPSLKAISTCLNLLVEANRIDLARQFLMHSRKNLSLKPNTCIFNI 210

Query: 287 LVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVSK 346
           LVKHHCRNG+L++AFEVV+EMK A++SYPNLITYSTLI GLC SG+LK AIELFE M+SK
Sbjct: 211 LVKHHCRNGDLESAFEVVKEMKKAKISYPNLITYSTLIDGLCVSGRLKGAIELFEEMISK 270

Query: 347 DKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQE 406
           D+ILPDALT+N+LINGFC+ GKVDRARKI+EFMKSNGCSPNVFNYS L+NGF K G+ +E
Sbjct: 271 DQILPDALTFNVLINGFCRDGKVDRARKIMEFMKSNGCSPNVFNYSALINGFFKVGRFEE 330

Query: 407 AKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVILG 466
           A+E+F EMKS G KPD V YTT++NC CRTGR DEA ELL++MK  +CRADVVT NVI G
Sbjct: 331 AEEIFYEMKSFGPKPDKVGYTTIINCFCRTGRTDEAMELLKEMKGGECRADVVTFNVIFG 390

Query: 467 GLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFVP 526
           GLCREGR EEAL M+++LP+EG +LNK SYRIVLNFL QKGELK+AT LL LML RGFVP
Sbjct: 391 GLCREGRLEEALRMLERLPYEGMHLNKASYRIVLNFLCQKGELKKATSLLDLMLGRGFVP 450

Query: 527 HYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFELL 586
           H+ATSN LLV LCN+GM  DA  +L GLLEMGFKPEPDSW  LVDLI RE+KLL  F+LL
Sbjct: 451 HFATSNELLVRLCNAGMADDAAMALFGLLEMGFKPEPDSWAILVDLISRERKLLSSFQLL 510

Query: 587 DELI 591
           DELI
Sbjct: 511 DELI 512

[Close]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match: B9T1X9_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0108800 PE=4 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 3.9e-197
Identity = 337/491 (68.64%), Postives = 408/491 (83.10%), Query Frame = 1 

Query: 108 WISKAIISKR-----NSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFN 167
           WIS    SK      +SPT   +T +E  +K K  +ISHE+AI LIK E+DPQHALEIFN
Sbjct: 23  WISPLQFSKAAPLVPDSPTETSSTLVETGRKCK--FISHESAINLIKREKDPQHALEIFN 82

Query: 168 MVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKS 227
           MV EQKGFNHN+ATY  ++ +LA++KKF A+D +LHQMTY+TCK HE IFLNLMKH+ KS
Sbjct: 83  MVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFYKS 142

Query: 228 SMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTC 287
           S+HERVL+MFYAIQ IVR+KPSLKAISTCLN+LVE+ ++DLA+K L+  +  L + PNTC
Sbjct: 143 SLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTC 202

Query: 288 IFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFEN 347
           IFNILVKHHC++G+L++A EV+ EMK +R SYPN+ITYSTLI GLC +G+LKEAIELFE 
Sbjct: 203 IFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEE 262

Query: 348 MVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEG 407
           MVSKD+ILPDALTY++LI GFC GGK DRARKI+EFM+SNGC PNVFNYSVLMNGFCKEG
Sbjct: 263 MVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEG 322

Query: 408 KLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLN 467
           +L+EAKEVFDEMKS G+KPDTV YTTL+NC C  GR+DEA ELL++M +  C+AD VT N
Sbjct: 323 RLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFN 382

Query: 468 VILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNR 527
           V+L GLCREGRF+EAL M++ L +EG YLNKGSYRIVLNFL QKGEL+++  LLGLML+R
Sbjct: 383 VLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSR 442

Query: 528 GFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPV 587
           GFVPHYATSN LLV LC +GMV +AV +L GL +MGF PEP SW  L++ ICRE+KLL V
Sbjct: 443 GFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYICRERKLLFV 502

Query: 588 FELLDELIAEE 594
           FEL+DEL+ +E
Sbjct: 503 FELVDELVEKE 511

[Close]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match: AT5G18475.1 (AT5G18475.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 560.5 bits (1443), Expect = 1.3e-159
Identity = 273/486 (56.17%), Postives = 357/486 (73.46%), Query Frame = 1 

Query: 108 WISKAIIS-KRNSPTRLFTTSIE-AQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVS 167
           W+S    S K+  P+    +SI   +   K+ +ISHE+A+ L+K ERDPQ  L+IFN  S
Sbjct: 21  WVSPICFSEKKKKPSPPPESSISPVETNPKTKFISHESAVSLMKRERDPQGVLDIFNKAS 80

Query: 168 EQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMH 227
           +QKGFNHNNATY  +L  L + KKF A+D +LHQM Y+TC+  E +FLNLM+H+S+S +H
Sbjct: 81  QQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLH 140

Query: 228 ERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFN 287
           ++V++MF  IQ I R KPSL AISTCLNLL+++  V+L+RKLL+ A   L L PNTCIFN
Sbjct: 141 DKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 200

Query: 288 ILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVS 347
           ILVKHHC+NG++  AF VV EMK + +SYPN ITYSTL+  L    + KEA+ELFE+M+S
Sbjct: 201 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMIS 260

Query: 348 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQ 407
           K+ I PD +T+N++INGFC+ G+V+RA+KI++FMK NGC+PNV+NYS LMNGFCK GK+Q
Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQ 320

Query: 408 EAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVIL 467
           EAK+ FDE+K  G+K DTV YTTLMNC CR G  DEA +LL +MK   CRAD +T NVIL
Sbjct: 321 EAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVIL 380

Query: 468 GGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFV 527
            GL  EGR EEAL M+ +   EG +LNKGSYRI+LN L   GEL++A + L +M  RG  
Sbjct: 381 RGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIW 440

Query: 528 PHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFEL 587
           PH+AT N L+V LC SG  +  V  L+G L +G  P P SW ++V+ IC+E+KL+ VFEL
Sbjct: 441 PHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFEL 500

Query: 588 LDELIA 592
           LD L++
Sbjct: 501 LDSLVS 506

[Close]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match: AT5G16420.1 (AT5G16420.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 222.6 bits (566), Expect = 6.3e-58
Identity = 129/430 (30.00%), Postives = 232/430 (53.95%), Query Frame = 1 

Query: 145 IRLIKNERDPQHALEIFNMVSEQK-GFNHNNATYGGILQRLAKSKKFQAIDGVLHQM--T 204
           + +I  +++   AL+IF    +   GF HN  TY  IL +L++++ F  ++ ++  +  +
Sbjct: 53  VSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNS 112

Query: 205 YDTCKLHEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRV 264
           Y   K  E +F++L+++Y  +  +E  + +F  I      K S+++++T LN+L++N R 
Sbjct: 113 YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDF-GVKRSVRSLNTLLNVLIQNQRF 172

Query: 265 DLARKLLVNASSKLNLIPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYS 324
           DL   +  N+     + PN    N+LVK  C+  ++++A++V+ E+ S  +  PNL+TY+
Sbjct: 173 DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL-VPNLVTYT 232

Query: 325 TLIGGLCQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKS 384
           T++GG    G ++ A  + E M+ +    PDA TY +L++G+C+ G+   A  +++ M+ 
Sbjct: 233 TILGGYVARGDMESAKRVLEEMLDRG-WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 292

Query: 385 NGCSPNVFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDE 444
           N   PN   Y V++   CKE K  EA+ +FDEM      PD+     +++ LC   +VDE
Sbjct: 293 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 352

Query: 445 ANELLQQMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLN 504
           A  L ++M   +C  D   L+ ++  LC+EGR  EA  +  +   +G   +  +Y  ++ 
Sbjct: 353 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIA 412

Query: 505 FLSQKGELKRATELLGLMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKP 564
            + +KGEL  A  L   M  R   P+  T N L+  L  +G VK+ V  L  +LE+G  P
Sbjct: 413 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 472

Query: 565 EPDSWFSLVD 572
              ++  L +
Sbjct: 473 NKTTFLILFE 478

[Close]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match: AT5G46100.1 (AT5G46100.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-57
Identity = 140/460 (30.43%), Postives = 237/460 (51.52%), Query Frame = 1 

Query: 136 SSYISHETAIRLIKNERDPQHALEIFNMVSEQ--KGFNHNNATYGGILQRLAKSKKFQAI 195
           S  I+    I+L++ E+D + ++ +F+  + +   G+ H+ +++G ++ RL  + KF+A 
Sbjct: 11  SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAA 70

Query: 196 DGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLN 255
           + ++ +M  + C + E I L++ + Y +       L +F+ ++      PS KA  T L 
Sbjct: 71  EDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCD-PSQKAYVTVLA 130

Query: 256 LLVENDRVDLARKLLVNASSKLNLIPNTCIFNILVKHHCRN-GNLQAAFEVVREMKSARV 315
           +LVE ++++LA K   N   ++ L P     N+L+K  CRN G + A  ++  EM   R 
Sbjct: 131 ILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPK-RG 190

Query: 316 SYPNLITYSTLIGGLCQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRA 375
             P+  TY TLI GLC+ G++ EA +LF  MV KD   P  +TY  LING C    VD A
Sbjct: 191 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD-CAPTVVTYTSLINGLCGSKNVDEA 250

Query: 376 RKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNC 435
            + +E MKS G  PNVF YS LM+G CK+G+  +A E+F+ M + G +P+ V+YTTL+  
Sbjct: 251 MRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 310

Query: 436 LCRTGRVDEANELLQQMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLN 495
           LC+  ++ EA ELL +M  Q  + D      ++ G C   +F EA + + ++   G   N
Sbjct: 311 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPN 370

Query: 496 KGSYRIVLNFLSQKGELKRATELLGLMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLV 555
           + ++ I                            H  TSN ++  LC +     A    +
Sbjct: 371 RLTWNI----------------------------HVKTSNEVVRGLC-ANYPSRAFTLYL 430

Query: 556 GLLEMGFKPEPDSWFSLVDLICREKKLLPVFELLDELIAE 593
            +   G   E ++  SLV  +C++ +     +L+DE++ +
Sbjct: 431 SMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTD 437

[Close]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 219.2 bits (557), Expect = 7.0e-57
Identity = 109/316 (34.49%), Postives = 188/316 (59.49%), Query Frame = 1 

Query: 278 IPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAI 337
           +P+   +N+++  +C+ G +  A  V+  M  +    P+++TY+T++  LC SGKLK+A+
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAM 228

Query: 338 ELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNG 397
           E+ + M+ +D   PD +TY ILI   C+   V  A K+++ M+  GC+P+V  Y+VL+NG
Sbjct: 229 EVLDRMLQRD-CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG 288

Query: 398 FCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRAD 457
            CKEG+L EA +  ++M S G +P+ +++  ++  +C TGR  +A +LL  M  +     
Sbjct: 289 ICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 348

Query: 458 VVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLG 517
           VVT N+++  LCR+G    A+D+++K+P  G   N  SY  +L+   ++ ++ RA E L 
Sbjct: 349 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 408

Query: 518 LMLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREK 577
            M++RG  P   T N++L  LC  G V+DAVE L  L   G  P   ++ +++D + +  
Sbjct: 409 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 468

Query: 578 KLLPVFELLDELIAEE 594
           K     +LLDE+ A++
Sbjct: 469 KTGKAIKLLDEMRAKD 479

[Close]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match: AT1G07740.1 (AT1G07740.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 219.2 bits (557), Expect = 7.0e-57
Identity = 124/409 (30.32%), Postives = 230/409 (56.23%), Query Frame = 1 

Query: 148 IKNERDPQHALEIFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKL 207
           +K   DP+ AL +F+   E  GF H+  +Y  ++ +LAKS+ F A+D +L  + Y   + 
Sbjct: 56  LKEIEDPEEALSLFHQYQEM-GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRC 115

Query: 208 HEGIFLNLMKHYSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKL 267
            E +F+ L++HY K+   ++ +D+F+ I S    + ++++++T +N+LV+N  ++ A K 
Sbjct: 116 RESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVR-TIQSLNTLINVLVDNGELEKA-KS 175

Query: 268 LVNASSKLNLIPNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGL 327
             + +  + L PN+  FNIL+K      + +AA +V  EM    V  P+++TY++LIG L
Sbjct: 176 FFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQ-PSVVTYNSLIGFL 235

Query: 328 CQSGKLKEAIELFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPN 387
           C++  + +A  L E+M+ K +I P+A+T+ +L+ G C  G+ + A+K++  M+  GC P 
Sbjct: 236 CRNDDMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPG 295

Query: 388 VFNYSVLMNGFCKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQ 447
           + NY +LM+   K G++ EAK +  EMK   +KPD V Y  L+N LC   RV EA  +L 
Sbjct: 296 LVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLT 355

Query: 448 QMKDQDCRADVVTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKG 507
           +M+ + C+ +  T  +++ G CR   F+  L+++  +    +     ++  ++  L + G
Sbjct: 356 EMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGG 415

Query: 508 ELKRATELLGLMLNRGFVPHYATSNSLLVLLC--NSGMVKDAVESLVGL 555
            L  A  +L +M  +          +LL  LC  + G+  +A+  ++ +
Sbjct: 416 NLDHACFVLEVMGKKNLSFGSGAWQNLLSDLCIKDGGVYCEALSEVISI 459

[Close]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match: gi|449436958|ref|XP_004136259.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Cucumis sativus])

HSP 1 Score: 863.6 bits (2230), Expect = 2.0e-247
Identity = 421/490 (85.92%), Postives = 465/490 (94.90%), Query Frame = 1 

Query: 106 IVWISKAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVS 165
           I W+SK +ISK N+  RLF TS E QKKSKSSYISHETAI+LIKNERDPQHAL+IFNMVS
Sbjct: 15  IGWVSKTVISKSNTSIRLFATSKEIQKKSKSSYISHETAIKLIKNERDPQHALDIFNMVS 74

Query: 166 EQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMH 225
           EQ+GFNHN+ATY  I+Q LAK KKFQAIDGVLHQMTYDTCK+HEGIFLNLMKH+SKSSMH
Sbjct: 75  EQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMH 134

Query: 226 ERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFN 285
           ERVLDMFYAI+SIVR+KPSLKAISTCLNLLVE+DRVDLARKLLVNA SKLNL PNTCIFN
Sbjct: 135 ERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFN 194

Query: 286 ILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVS 345
           ILVKHHCRNG+LQAAFEVV+EMKSARVSYPNL+TYSTLIGGLC++GKLKEAIE FE MVS
Sbjct: 195 ILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVS 254

Query: 346 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQ 405
           KD ILPDALTYNILINGFCQ GKVDRAR I+EFMKSNGCSPNVFNYSVLMNG+CKEG+LQ
Sbjct: 255 KDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQ 314

Query: 406 EAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVIL 465
           EAKEVF+E+KSLGMKPDT+SYTTL+NCLCRTGRVDEA ELLQQMKD+DCRAD VT NV+L
Sbjct: 315 EAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVML 374

Query: 466 GGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFV 525
           GGLCREGRF+EALDMVQKLPFEG+YLNKGSYRIVLNFL+QKGEL++ATELLGLMLNRGFV
Sbjct: 375 GGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFV 434

Query: 526 PHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFEL 585
           PH+ATSN+LL+LLCN+GMVKDAVESL+GLLEMGFKPE +SWF+LVDLICRE+K+LPVFEL
Sbjct: 435 PHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFEL 494

Query: 586 LDELIAEEHL 596
           LD L+ +E+L
Sbjct: 495 LDVLVTQEYL 504

[Close]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match: gi|659132396|ref|XP_008466175.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Cucumis melo])

HSP 1 Score: 860.9 bits (2223), Expect = 1.3e-246
Identity = 421/490 (85.92%), Postives = 465/490 (94.90%), Query Frame = 1 

Query: 106 IVWISKAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFNMVS 165
           I W+SK   SK N+  RLF TS E QKKSKSSY+SHETAI+LIKNERDPQHAL+IFNMVS
Sbjct: 15  IGWVSKTF-SKSNTSIRLFATSKEIQKKSKSSYVSHETAIKLIKNERDPQHALDIFNMVS 74

Query: 166 EQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKSSMH 225
           EQ+GFNHN+ATY  I+Q+LAKSKKFQAIDGVLHQMTYDTCK+HEGIFLNLMKH+S SSMH
Sbjct: 75  EQQGFNHNHATYASIIQKLAKSKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSVSSMH 134

Query: 226 ERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTCIFN 285
           ERVLDMFYAI+SIVR+KPSLKA STCLNLLVE+DRVDLARKLLVNA SKLNL PNTCIFN
Sbjct: 135 ERVLDMFYAIKSIVREKPSLKAFSTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFN 194

Query: 286 ILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFENMVS 345
           ILVKHHCRNG+LQAAFEVV+EMKSARVSYPNL+TYSTLIGGLC++GKLKEAIE FE MVS
Sbjct: 195 ILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVS 254

Query: 346 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEGKLQ 405
           KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGC PNVFNYS LMNG+CKEG+LQ
Sbjct: 255 KDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCIPNVFNYSALMNGYCKEGRLQ 314

Query: 406 EAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLNVIL 465
           EAKEVF+E+KSLGMKPDT+SYTTL+NCLCRTGRVDEA ELLQQMKD+DCRAD VT NV+L
Sbjct: 315 EAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVML 374

Query: 466 GGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNRGFV 525
           GGLCREGRFEEALDMVQKLPFEG+YLNKGSYRIVLNFL+QKGEL+RATELLGLMLNRGFV
Sbjct: 375 GGLCREGRFEEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRRATELLGLMLNRGFV 434

Query: 526 PHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPVFEL 585
           PH+ATSN+LL+LLCN+GMVKDAVESL+GLLEMGFKPE +SWF+LV+LICRE+K+LP+FEL
Sbjct: 435 PHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVNLICRERKMLPMFEL 494

Query: 586 LDELIAEEHL 596
           LDEL+ E++L
Sbjct: 495 LDELVTEKYL 503

[Close]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match: gi|645225030|ref|XP_008219391.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Prunus mume])

HSP 1 Score: 719.9 bits (1857), Expect = 3.6e-204
Identity = 346/494 (70.04%), Postives = 418/494 (84.62%), Query Frame = 1 

Query: 105 NIVWISKAIISKRNS-----PTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALE 164
           ++ WIS    +K N+     P    TT  E ++K+K  YISHE+ I LIK ERDPQHALE
Sbjct: 24  SLPWISPLQFTKVNTHKPDPPPETTTTQTETRRKTK--YISHESTINLIKRERDPQHALE 83

Query: 165 IFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHY 224
           IFNMVSEQKGFNHNNATY  ILQ+LA+SKKF+AID +LHQMTY+TCK HEGIFLNLMKH+
Sbjct: 84  IFNMVSEQKGFNHNNATYATILQKLAQSKKFKAIDAILHQMTYETCKFHEGIFLNLMKHF 143

Query: 225 SKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIP 284
           SKSSMHERVL+MFYAIQ +VR+KPSLK ISTCLNLL+E+++VDLA++ L++    LN  P
Sbjct: 144 SKSSMHERVLEMFYAIQPVVREKPSLKCISTCLNLLIESNQVDLAQQFLMHLKKNLNFKP 203

Query: 285 NTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIEL 344
           NTCI NILVKHHC+NG+L++AFEVV+EMK +++SYPNL+TYSTL+GGLC+S +L EA+EL
Sbjct: 204 NTCIVNILVKHHCKNGDLESAFEVVKEMKKSKISYPNLVTYSTLLGGLCKSDRLTEAMEL 263

Query: 345 FENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFC 404
           FE M+SKD+ILPDALTYN+LINGFC GGKVDRARKI+EFMKSNGC PNVFNY+ LMNGFC
Sbjct: 264 FEEMISKDQILPDALTYNVLINGFCHGGKVDRARKILEFMKSNGCQPNVFNYTALMNGFC 323

Query: 405 KEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVV 464
           KE +LQEAKE+F EM S G+KPDTV YT L+NC CRTG+++EA ELL++MK+++C+AD V
Sbjct: 324 KEKRLQEAKEIFHEMTSFGIKPDTVGYTALINCCCRTGKMNEAIELLKEMKERECKADTV 383

Query: 465 TLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLM 524
           T NVILGGLCREGR E+AL+M++KLP+EG YLNK SYRIVLNFL QKGEL +AT+LLGLM
Sbjct: 384 TFNVILGGLCREGRIEDALEMLEKLPYEGVYLNKASYRIVLNFLCQKGELNKATQLLGLM 443

Query: 525 LNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKL 584
           + RGFVPHYATSN LLV L  +GM ++AV +L  L EMGFKP+PDSW  LV+ ICRE+KL
Sbjct: 444 MGRGFVPHYATSNDLLVRLSEAGMAENAVMALSRLAEMGFKPQPDSWALLVESICRERKL 503

Query: 585 LPVFELLDELIAEE 594
           L  FELLDEL+  E
Sbjct: 504 LSAFELLDELVVIE 515

[Close]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match: gi|590585348|ref|XP_007015425.1| (Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 714.9 bits (1844), Expect = 1.2e-202
Identity = 345/491 (70.26%), Postives = 420/491 (85.54%), Query Frame = 1 

Query: 108 WIS-----KAIISKRNSPTRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHALEIFN 167
           WIS     KA   KR+ P  +  T  E+Q+K +  ++SHETAI LIK ERDPQ ALEIFN
Sbjct: 26  WISPLQFLKANSQKRDPPPEIPYTLTESQRKPR--FVSHETAINLIKRERDPQRALEIFN 85

Query: 168 MVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKHYSKS 227
            VSEQKGF+HNNATYG IL +L +SKKFQAID +L QMTY+TCK HEG+FLNLMKH+SK 
Sbjct: 86  RVSEQKGFSHNNATYGTILHKLVQSKKFQAIDSILRQMTYETCKFHEGVFLNLMKHFSKF 145

Query: 228 SMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLIPNTC 287
           S+H+RVL+MFYAIQ IVR+KPSLKAISTCLNLL+E+++VDLAR  L+N+   L L PNTC
Sbjct: 146 SLHDRVLEMFYAIQPIVREKPSLKAISTCLNLLIESNQVDLARHFLLNSKKSLRLRPNTC 205

Query: 288 IFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIELFEN 347
           IFNILVKHHC+NG+L++AFEVV+EMK +RVSYPNLITYSTL+GGLC+SG+LKEAIELFE 
Sbjct: 206 IFNILVKHHCKNGDLESAFEVVKEMKKSRVSYPNLITYSTLMGGLCESGRLKEAIELFEE 265

Query: 348 MVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGFCKEG 407
           MV+KD+ILPD LTYNILINGFC  GKVDRARKI+EFMK+NGC+PN+FNYS L+NGFCKEG
Sbjct: 266 MVAKDQILPDVLTYNILINGFCCRGKVDRARKIMEFMKNNGCNPNLFNYSTLINGFCKEG 325

Query: 408 KLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADVVTLN 467
           + QEAKEVF EM+S+G+KPDT+ YTTL+NCLCR  +++EA ELL++MK+++C+ADVVTLN
Sbjct: 326 RWQEAKEVFVEMESIGLKPDTIGYTTLINCLCRAAQIEEAMELLKEMKEKECQADVVTLN 385

Query: 468 VILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGLMLNR 527
           V+LGGLCREGRF++AL M++KLP+EG YLNK SYRIVLN L QK E+++A +L+GLML+R
Sbjct: 386 VLLGGLCREGRFQDALQMLEKLPYEGVYLNKASYRIVLNSLCQKDEMEKAAKLVGLMLDR 445

Query: 528 GFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKKLLPV 587
           GFVPHYATSN LL+ LC +GMV DAV +LVGL E GFKPEP  W  L +L C+E+KLL V
Sbjct: 446 GFVPHYATSNDLLIRLCKAGMVDDAVTALVGLAETGFKPEPHCWEFLTELNCKERKLLSV 505

Query: 588 FELLDELIAEE 594
           FELLDEL+ +E
Sbjct: 506 FELLDELVIKE 514

[Close]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match: gi|731428559|ref|XP_002283907.3| (PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Vitis vinifera])

HSP 1 Score: 712.2 bits (1837), Expect = 7.5e-202
Identity = 352/495 (71.11%), Postives = 412/495 (83.23%), Query Frame = 1 

Query: 105 NIVWISKAIISKRNSP------TRLFTTSIEAQKKSKSSYISHETAIRLIKNERDPQHAL 164
           ++ WIS        SP      T   TT +E +KK K  +ISHE+AI LIK E DPQ AL
Sbjct: 31  SLPWISPLQYLNATSPKPDPPATEATTTMVEPRKKPK--FISHESAINLIKRETDPQRAL 90

Query: 165 EIFNMVSEQKGFNHNNATYGGILQRLAKSKKFQAIDGVLHQMTYDTCKLHEGIFLNLMKH 224
           EIFN V+EQ+GF+HNNATY  IL +LAKSKKFQAID VLHQMTY+TCK HEGIFLNLMKH
Sbjct: 91  EIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKH 150

Query: 225 YSKSSMHERVLDMFYAIQSIVRQKPSLKAISTCLNLLVENDRVDLARKLLVNASSKLNLI 284
           +SK S+HERV++MF AI+ IVR+KPSLKAISTCLNLLVE+++VDL RK L+N+   LNL 
Sbjct: 151 FSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLE 210

Query: 285 PNTCIFNILVKHHCRNGNLQAAFEVVREMKSARVSYPNLITYSTLIGGLCQSGKLKEAIE 344
           PNTCIFNILVKHHC+NG++ +AFEVV EMK + VSYPNLITYSTLI GLC SG+LKEAIE
Sbjct: 211 PNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 270

Query: 345 LFENMVSKDKILPDALTYNILINGFCQGGKVDRARKIVEFMKSNGCSPNVFNYSVLMNGF 404
           LFE MVSKD+ILPDALTYN LINGFC G KVDRA KI+EFMK NGC+PNVFNYS LMNGF
Sbjct: 271 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 330

Query: 405 CKEGKLQEAKEVFDEMKSLGMKPDTVSYTTLMNCLCRTGRVDEANELLQQMKDQDCRADV 464
           CKEG+L+EAKEVFDEMKSLG+KPDTV YTTL+N  CR GRVDEA ELL+ M++  CRAD 
Sbjct: 331 CKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADT 390

Query: 465 VTLNVILGGLCREGRFEEALDMVQKLPFEGYYLNKGSYRIVLNFLSQKGELKRATELLGL 524
           VT NVILGGLCREGRFEEA  M+++LP+EG YLNK SYRIVLN L ++GEL++AT+L+GL
Sbjct: 391 VTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGL 450

Query: 525 MLNRGFVPHYATSNSLLVLLCNSGMVKDAVESLVGLLEMGFKPEPDSWFSLVDLICREKK 584
           ML RG +PH+ATSN LLV LC +G V DAV +L+GLLE+GFKPEP+SW  LV+LICRE+K
Sbjct: 451 MLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERK 510

Query: 585 LLPVFELLDELIAEE 594
           LLP FELLD+L+ +E
Sbjct: 511 LLPAFELLDDLVIQE 523

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g04230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP392_ARATH2.3e-15856.17Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN... [more]
PP388_ARATH1.1e-5630.00Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
PP418_ARATH1.9e-5630.43Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN... [more]
PPR28_ARATH1.2e-5534.49Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN... [more]
PPR20_ARATH1.2e-5530.32Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG06g04230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW7_CUCSA1.4e-24785.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890050 PE=4 SV=1[more]
A0A061GZH5_THECC8.0e-20370.26Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM... [more]
F6H114_VITVI5.2e-20271.11Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07250 PE=4 SV=... [more]
W9RXH4_9ROSA4.6e-19871.28Uncharacterized protein OS=Morus notabilis GN=L484_007723 PE=4 SV=1[more]
B9T1X9_RICCO3.9e-19768.64Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
BLAST of Cp4.1LG06g04230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18475.11.3e-15956.17 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G16420.16.3e-5830.00 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G46100.11.1e-5730.43 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G09900.17.0e-5734.49 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G07740.17.0e-5730.32 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG06g04230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436958|ref|XP_004136259.1|2.0e-24785.92PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Cucumis sativu... [more]
gi|659132396|ref|XP_008466175.1|1.3e-24685.92PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Cucumis melo][more]
gi|645225030|ref|XP_008219391.1|3.6e-20470.04PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Prunus mume][more]
gi|590585348|ref|XP_007015425.1|1.2e-20270.26Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao][more]
gi|731428559|ref|XP_002283907.3|7.5e-20271.11PREDICTED: pentatricopeptide repeat-containing protein At5g18475 [Vitis vinifera... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g04230.1Cp4.1LG06g04230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 277..308
score: 9.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 315..365
score: 4.4E-17coord: 457..502
score: 1.3E-7coord: 386..435
score: 2.2
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 318..353
score: 1.7E-8coord: 391..423
score: 1.1E-10coord: 495..526
score: 0.0014coord: 283..315
score: 2.5E-6coord: 355..388
score: 1.4E-10coord: 459..492
score: 1.2E-5coord: 424..457
score: 1.2
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 422..456
score: 13.011coord: 173..207
score: 6.511coord: 527..561
score: 8.276coord: 457..491
score: 10.687coord: 316..350
score: 11.751coord: 387..421
score: 14.239coord: 492..526
score: 9.668coord: 562..596
score: 5.875coord: 352..386
score: 13.767coord: 280..314
score: 9.745coord: 244..279
score: 5
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 518..557
score: 1.1E-8coord: 294..484
score: 1.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 120..222
score: 2.7E-252coord: 78..84
score: 2.7E-252coord: 27..46
score: 2.7E-252coord: 259..593
score: 2.7E
NoneNo IPR availablePANTHERPTHR24015:SF609SUBFAMILY NOT NAMEDcoord: 120..222
score: 2.7E-252coord: 259..593
score: 2.7E-252coord: 27..46
score: 2.7E-252coord: 78..84
score: 2.7E
NoneNo IPR availableunknownSSF81901HCP-likecoord: 328..485
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g04230Cucsa.311820Cucumber (Gy14) v1cgycpeB0828
Cp4.1LG06g04230CmaCh09G005880Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g04230CmoCh09G005730Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g04230Cla023046Watermelon (97103) v1cpewmB774
Cp4.1LG06g04230Csa3G890050Cucumber (Chinese Long) v2cpecuB776
Cp4.1LG06g04230ClCG11G014470Watermelon (Charleston Gray)cpewcgB693
Cp4.1LG06g04230CSPI03G45410Wild cucumber (PI 183967)cpecpiB778
Cp4.1LG06g04230Lsi04G022710Bottle gourd (USVL1VR-Ls)cpelsiB636
Cp4.1LG06g04230CsaV3_2G030450Cucumber (Chinese Long) v3cpecucB0956
Cp4.1LG06g04230CsaV3_3G047880Cucumber (Chinese Long) v3cpecucB0964
Cp4.1LG06g04230Bhi09G002102Wax gourdcpewgoB0988
Cp4.1LG06g04230Bhi04G000750Wax gourdcpewgoB0985
Cp4.1LG06g04230CsGy3G042900Cucumber (Gy14) v2cgybcpeB436
Cp4.1LG06g04230CsGy2G021530Cucumber (Gy14) v2cgybcpeB258
Cp4.1LG06g04230Carg03001Silver-seed gourdcarcpeB0906
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g04230Melon (DHL92) v3.6.1cpemedB857
Cp4.1LG06g04230Melon (DHL92) v3.6.1cpemedB861
Cp4.1LG06g04230Melon (DHL92) v3.6.1cpemedB876
Cp4.1LG06g04230Silver-seed gourdcarcpeB0085
Cp4.1LG06g04230Cucumber (Chinese Long) v3cpecucB0955
Cp4.1LG06g04230Cucumber (Chinese Long) v3cpecucB0985
Cp4.1LG06g04230Cucurbita pepo (Zucchini)cpecpeB135
Cp4.1LG06g04230Cucurbita pepo (Zucchini)cpecpeB467
Cp4.1LG06g04230Cucurbita pepo (Zucchini)cpecpeB511
Cp4.1LG06g04230Cucurbita maxima (Rimu)cmacpeB200
Cp4.1LG06g04230Cucurbita maxima (Rimu)cmacpeB502
Cp4.1LG06g04230Cucurbita maxima (Rimu)cmacpeB786
Cp4.1LG06g04230Cucurbita moschata (Rifu)cmocpeB460
Cp4.1LG06g04230Cucurbita moschata (Rifu)cmocpeB739
Cp4.1LG06g04230Melon (DHL92) v3.5.1cpemeB728
Cp4.1LG06g04230Cucumber (Gy14) v2cgybcpeB252
Cp4.1LG06g04230Cucumber (Gy14) v2cgybcpeB253
Cp4.1LG06g04230Cucumber (Gy14) v2cgybcpeB871