Cp4.1LG06g02870 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG06g02870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG06 : 1585763 .. 1589077 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCAAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCTAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAAATCCGGAGGAAGCGACGGTGGCGGTAAAAGAGAAGACGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCGGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCTGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCGTGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTGCTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGAGGTGGGCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATGGAAGAATGGTTTCAGAAGGGCTTAAACCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAGGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATTAGAGTACTAGGAAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACCGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATTTGGACACTGTCAAAGAATTTTGGGGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGACGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAACATTGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAATCGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTATAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGTACTTTAGTTGAAGCTGAGATAGATAAAGCCATTATATTTGCTGAAGAATTGGTATTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTCGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTTGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCGAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTATTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGATGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCGGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTCTGGTAGAATGCCTTTGCCTTGCTGGAAGAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCACAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGACTTGCTGGAATGGTGGAAGAAGCCGAGAGGATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAATGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGGTCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

mRNA sequence

ATGTTCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCAAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCTAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAAATCCGGAGGAAGCGACGGTGGCGGTAAAAGAGAAGACGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCGGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCTGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCGTGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTGCTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGAGGTGGGCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATGGAAGAATGGTTTCAGAAGGGCTTAAACCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAGGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATTAGAGTACTAGGAAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACCGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATTTGGACACTGTCAAAGAATTTTGGGGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGACGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAACATTGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAATCGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTATAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGTACTTTAGTTGAAGCTGAGATAGATAAAGCCATTATATTTGCTGAAGAATTGGTATTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTCGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTTGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCGAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTATTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGATGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCGGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTCTGGTAGAATGCCTTTGCCTTGCTGGAAGAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCACAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGACTTGCTGGAATGGTGGAAGAAGCCGAGAGGATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAATGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGGTCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

Coding sequence (CDS)

ATGTTCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCAAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCTAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAAATCCGGAGGAAGCGACGGTGGCGGTAAAAGAGAAGACGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCGGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCTGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCGTGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTGCTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGAGGTGGGCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATGGAAGAATGGTTTCAGAAGGGCTTAAACCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAGGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATTAGAGTACTAGGAAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACCGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATTTGGACACTGTCAAAGAATTTTGGGGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGACGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAACATTGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAATCGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTATAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGTACTTTAGTTGAAGCTGAGATAGATAAAGCCATTATATTTGCTGAAGAATTGGTATTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTCGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTTGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCGAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTATTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGATGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCGGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTCTGGTAGAATGCCTTTGCCTTGCTGGAAGAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCACAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGACTTGCTGGAATGGTGGAAGAAGCCGAGAGGATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAATGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGGTCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

Protein sequence

MFSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPEHAYTVYKNMMVDGCNPNDGTYAQLPNPS
BLAST of Cp4.1LG06g02870 vs. Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 1411.0 bits (3651), Expect = 0.0e+00
Identity = 684/1075 (63.63%), Postives = 850/1075 (79.07%), Query Frame = 1

Query: 33   GDFRTATLSMANWKKHRKKRKNVCRFALQNPEEATVAVKEKTKIP--VSEEEILRALKSM 92
            G  +   L + + KKH +++   C        + + ++  K+  P   S EE+ R LKS 
Sbjct: 36   GGLKFHALKIGSRKKHWRRKSMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSF 95

Query: 93   TDTTRALSYFYSVPDFPCVQHTTETCNFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLST 152
             DT  + SYF SV     + HTTETCN++LE LRV  K+E+MA VF+ MQK+II+RD +T
Sbjct: 96   PDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNT 155

Query: 153  YLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMV 212
            YLTIFK+LS++GGL+Q   AL+KMR+ GFVLNAYSYNGLIHLL++S FC+EA+EVY RM+
Sbjct: 156  YLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMI 215

Query: 213  SEGLKPSLKTYSALMVALGKKRDSETVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKID 272
             EG +PSL+TYS+LMV LGK+RD ++VM LLKEME+LGL+PNVYT+TICIRVLGRAGKI+
Sbjct: 216  LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKIN 275

Query: 273  EAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVIYITLL 332
            EAYEI +RMD+EGCGPD+VTYTVLIDALC A +L+ AKE+F KMK   HKPD+V YITLL
Sbjct: 276  EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL 335

Query: 333  DKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGIL 392
            D+F+D  DLD+VK+FW +ME DG++PDVVTFTILVD LCKA +F EAF T DVMR QGIL
Sbjct: 336  DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL 395

Query: 393  PNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVET 452
            PNLHTYNTLICGLL+  R++DAL+L   MESLGV+PTAYTY++FIDY+GKSGD+  A+ET
Sbjct: 396  PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455

Query: 453  FEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSK 512
            FEKMK +GI PNIVACNASLYSLA++GR REAK +F GL++ GL PDSVTYNMMMKCYSK
Sbjct: 456  FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515

Query: 513  VGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVT 572
            VG++D+A+ LL EM++NGCEPDVIVVNSLI++LYKA RVDEAWKMF RMK+MKL PTVVT
Sbjct: 516  VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 573  YNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMT 632
            YNTLL+GLGK G++Q+AIELFE M+++ C PNTI+FNTL DC CKNDE+ LAL+M  KM 
Sbjct: 576  YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 633  EMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGD 692
            +M C PDV TYNT+I+GL+K  +V  A  FFHQ+KK +YPD VT+CTLLPG+VK+  I D
Sbjct: 636  DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIED 695

Query: 693  AIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICRE-DSFLIPL 752
            A KI  +F+     +    FWEDL+G  L EA ID A+ F+E LV NGICR+ DS L+P+
Sbjct: 696  AYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPI 755

Query: 753  IRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAA 812
            IR  CK      A  +FE FT +L ++P + +YN LIG LLE    E A D+F  +K+  
Sbjct: 756  IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTG 815

Query: 813  CAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKAL 872
            C PD  TYN LLD +GK GKI ELFELY EM + +C+ N IT+NIVIS L K+ N+D AL
Sbjct: 816  CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875

Query: 873  DFYYDLVSS-DFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILING 932
            D YYDL+S  DF PT CTYGPL+DGL+K+GRL EA QLFE M DYGC+PNCAI+NILING
Sbjct: 876  DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935

Query: 933  YGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPD 992
            +GK G+ + A  LFKRMVKEG+RPDLK+Y++LV+CLC+ GRVDE L+YF+ELK +GL+PD
Sbjct: 936  FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995

Query: 993  FIAYNRIINGLGKSQRMEEALALYSEMR-ERGIVPDLHTYNAMLLYLGLAGMVEEAERMY 1052
             + YN IINGLGKS R+EEAL L++EM+  RGI PDL+TYN+++L LG+AGMVEEA ++Y
Sbjct: 996  VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055

Query: 1053 EELQLAGLEPDVFTYNALIRGYSVSGNPEHAYTVYKNMMVDGCNPNDGTYAQLPN 1103
             E+Q AGLEP+VFT+NALIRGYS+SG PEHAY VY+ M+  G +PN GTY QLPN
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110

BLAST of Cp4.1LG06g02870 vs. Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 4.3e-94
Identity = 205/719 (28.51%), Postives = 348/719 (48.40%), Query Frame = 1

Query: 338  DLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYN 397
            + D + +  G+M   G+ P V T   +V    KA    E +    +MRK    P    Y 
Sbjct: 113  NFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYT 172

Query: 398  TLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKAR 457
            TLI         +  L L   M+ LG +PT + +   I  F K G    A+   ++MK+ 
Sbjct: 173  TLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSS 232

Query: 458  GIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDA 517
             +  +IV  N  + S  + G++  A   F+ +  NGL PD VTY  M+    K  ++D+A
Sbjct: 233  SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEA 292

Query: 518  VNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSG 577
            V +   + KN   P     N++I     AG+ DEA+ + +R +     P+V+ YN +L+ 
Sbjct: 293  VEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352

Query: 578  LGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPD 637
            L K G+V +A+++FE M K+  +PN  ++N L+D  C+  +++ A E+   M +    P+
Sbjct: 353  LRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 412

Query: 638  VLTYNTVIYGLIKENRVNYAFWFFHQLK-KSMYPDHVTICTLLPGIVKSGRIGDAIKIAK 697
            V T N ++  L K  +++ A   F ++  K   PD +T C+L+ G+ K GR+ DA K+ +
Sbjct: 413  VRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 472

Query: 698  DFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQ 757
              ++    R N   +  L+         +      ++++      +   L   +  + K 
Sbjct: 473  KMLDS-DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 532

Query: 758  KRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFT 817
                    +FE         P   SY+ LI  L++  +  + ++LF  MK   C  DT  
Sbjct: 533  GEPEKGRAMFEEIKAR-RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 592

Query: 818  YNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLV 877
            YN+++D   K GK+ + ++L  EM ++  +P V+TY  VI  LAK + LD+A   + +  
Sbjct: 593  YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 652

Query: 878  SSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIE 937
            S         Y  L+DG  K GR++EA  + EE+   G  PN   +N L++   K  +I 
Sbjct: 653  SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN 712

Query: 938  IAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRII 997
             A   F+ M +    P+  +Y IL+  LC   + ++A  +++E++  G+ P  I+Y  +I
Sbjct: 713  EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 772

Query: 998  NGLGKSQRMEEALALYSEMRERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGL 1056
            +GL K+  + EA AL+   +  G VPD   YNAM+  L       +A  ++EE +  GL
Sbjct: 773  SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828

BLAST of Cp4.1LG06g02870 vs. Swiss-Prot
Match: PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 337.0 bits (863), Expect = 7.6e-91
Identity = 219/836 (26.20%), Postives = 390/836 (46.65%), Query Frame = 1

Query: 240  LLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALC 299
            + + M   G  P+VYT    +  + ++G+    +   + M +    PD+ T+ +LI+ LC
Sbjct: 145  IFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLC 204

Query: 300  NAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVV 359
              G  E +  L  KM+ +G+ P  V Y T+L  +   G      E    M++ G   DV 
Sbjct: 205  AEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVC 264

Query: 360  TFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTM 419
            T+ +L+  LC++    + +     MRK+ I PN  TYNTLI G    G++  A +LL+ M
Sbjct: 265  TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM 324

Query: 420  ESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRL 479
             S G+ P   T+   ID     G+  +A++ F  M+A+G+ P+ V+    L  L ++   
Sbjct: 325  LSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 384

Query: 480  REAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSL 539
              A+  +  ++ NG+    +TY  M+    K G +D+AV LL EM K+G +PD++  ++L
Sbjct: 385  DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 444

Query: 540  IDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRC 599
            I+   K GR   A ++  R+  + LSP  + Y+TL+    + G +++AI ++E+MI +  
Sbjct: 445  INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH 504

Query: 600  SPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFW 659
            + +  +FN L+   CK  ++  A E    MT     P+ ++++ +I G         AF 
Sbjct: 505  TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 564

Query: 660  FFHQLKK-SMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGT 719
             F ++ K   +P   T  +LL G+ K G + +A K  K  ++ V   V+   +  L+   
Sbjct: 565  VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS-LHAVPAAVDTVMYNTLLTAM 624

Query: 720  LVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPT 779
                 + KA+    E+V   I  +      LI  LC++ + + A    +       + P 
Sbjct: 625  CKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPN 684

Query: 780  VASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYN 839
               Y C +  + +    +      + M N    PD  T N ++D + ++GKI +  +L  
Sbjct: 685  KVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLP 744

Query: 840  EMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAG 899
            EM ++   PN+ TYNI++   +K  ++  +   Y  ++ +   P   T   L+ G+ ++ 
Sbjct: 745  EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 804

Query: 900  RLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYT 959
             LE  +++ +     G + +   FN+LI+     G+I  A  L K M   GI  D  +  
Sbjct: 805  MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCD 864

Query: 960  ILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRER 1019
             +V  L    R  E+     E+   G+ P+   Y  +INGL +   ++ A  +  EM   
Sbjct: 865  AMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAH 924

Query: 1020 GIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGN 1075
             I P     +AM+  L   G  +EA  +   +    L P + ++  L+     +GN
Sbjct: 925  KICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 979

BLAST of Cp4.1LG06g02870 vs. Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.6e-85
Identity = 219/815 (26.87%), Postives = 396/815 (48.59%), Query Frame = 1

Query: 178 GFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETV 237
           GF  +  S+  LIH L+++     A  +   ++   LKPS   ++ L     K + S + 
Sbjct: 99  GFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPS-DVFNVLFSCYEKCKLSSSS 158

Query: 238 MVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRM-DEEGCGPDLVTYTVLID 297
                            ++ + I+   R+ ++ +   +F+ M  +    P++ T + L+ 
Sbjct: 159 -----------------SFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLH 218

Query: 298 ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 357
            L        A ELF  M + G +PD  IY  ++    +  DL   KE    MEA G   
Sbjct: 219 GLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDV 278

Query: 358 DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 417
           ++V + +L+D LCK +   EA      +  + + P++ TY TL+ GL K    E  L+++
Sbjct: 279 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 338

Query: 418 DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 477
           D M  L   P+       ++   K G   +A+   +++   G+ PN+   NA + SL + 
Sbjct: 339 DEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 398

Query: 478 GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 537
            +  EA+ +F+ + + GL P+ VTY++++  + + G++D A++ L EM+  G +  V   
Sbjct: 399 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 458

Query: 538 NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 597
           NSLI+   K G +  A      M + KL PTVVTY +L+ G   +G++ KA+ L+  M  
Sbjct: 459 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 518

Query: 598 QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 657
           +  +P+  +F TLL    +   I  A+++F++M E + KP+ +TYN +I G  +E  ++ 
Sbjct: 519 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 578

Query: 658 AFWFFHQL-KKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLM 717
           AF F  ++ +K + PD  +   L+ G+  +G+  +A K+  D +++    +N   +  L+
Sbjct: 579 AFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLL 638

Query: 718 GGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQK-RALYAYQIFENFTTNLE 777
            G   E ++++A+   +E+V  G+  +      LI    K K R L+   + E     L 
Sbjct: 639 HGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGL- 698

Query: 778 IKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELF 837
            KP    Y  +I    +    ++A+ ++  M N  C P+  TY  +++   K G + E  
Sbjct: 699 -KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 758

Query: 838 ELYNEMVSRKCKPNVITYNIVISSLAKSN-NLDKALDFYYDLVSSDFCPTPCTYGPLLDG 897
            L ++M      PN +TY   +  L K   ++ KA++ +  ++      T  TY  L+ G
Sbjct: 759 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANT-ATYNMLIRG 818

Query: 898 LAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPD 957
             + GR+EEA +L   M   G  P+C  +  +IN   +  D++ A +L+  M ++GIRPD
Sbjct: 819 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 878

Query: 958 LKSYTILVECLCLAGRVDEALYYFEELKSTGLDPD 989
             +Y  L+   C+AG + +A     E+   GL P+
Sbjct: 879 RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891

BLAST of Cp4.1LG06g02870 vs. Swiss-Prot
Match: PP381_ARATH (Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=3 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 2.6e-83
Identity = 235/905 (25.97%), Postives = 413/905 (45.64%), Query Frame = 1

Query: 148  LSTYLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALE-VY 207
            +S + T+F+       L      L  M   G V ++  +N LIH    +G   + +  +Y
Sbjct: 60   VSLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIY 119

Query: 208  GRMVSEGLKPSLKTYSALMVALGKK-RDSETVMVLLKEMESLGLRPNVYTYTICIRVLGR 267
             +M++ G+ P +   + L+ +  K  R S  + +L   + S+    +  TY   I  L  
Sbjct: 120  SKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVISI----DTVTYNTVISGLCE 179

Query: 268  AGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVI 327
             G  DEAY+    M + G  PD V+Y  LID  C  G        FV+ KA   +  ++ 
Sbjct: 180  HGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGN-------FVRAKALVDEISELN 239

Query: 328  YITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMR 387
             IT     + + +L  ++E +  M   G+ PDVVTF+ +++ LCK     E       M 
Sbjct: 240  LITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREME 299

Query: 388  KQGILPNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTG 447
            +  + PN  TY TL+  L KA     AL L   M   G+      Y + +D   K+GD  
Sbjct: 300  EMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLR 359

Query: 448  KAVETFEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMM 507
            +A +TF+ +     VPN+V   A +  L ++G L  A+ +   + E  + P+ VTY+ M+
Sbjct: 360  EAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMI 419

Query: 508  KCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLS 567
              Y K G +++AV+LL +M      P+     ++ID L+KAG+ + A ++   M+ + + 
Sbjct: 420  NGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVE 479

Query: 568  PTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEM 627
                  + L++ L + GR+++   L + M+ +  + + I++ +L+D F K  + E AL  
Sbjct: 480  ENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAW 539

Query: 628  FSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKS 687
              +M E     DV++YN +I G++K  +V   + +    +K + PD  T   ++    K 
Sbjct: 540  AEEMQERGMPWDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQ 599

Query: 688  GRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICREDSF 747
            G     +K+  D +     + +      ++G      ++++AI    +++L  I    + 
Sbjct: 600  GDSEGILKL-WDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTT 659

Query: 748  LIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDM 807
                +    K KRA   ++  E    +  IK +   YN LI  L ++  T+KA  +  DM
Sbjct: 660  YRIFLDTSSKHKRADAIFKTHETL-LSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDM 719

Query: 808  KNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNL 867
            +     PDT T+N L+  +     + +    Y+ M+     PNV TYN +I  L+ +  +
Sbjct: 720  EARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLI 779

Query: 868  DKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNIL 927
             +   +  ++ S    P   TY  L+ G AK G ++ +M ++ EM   G  P  + +N+L
Sbjct: 780  KEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVL 839

Query: 928  INGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGL 987
            I+ +   G +  A +L K M K G+ P+  +Y  ++  LC                    
Sbjct: 840  ISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLC----------------KLCT 899

Query: 988  DPDFIAYNRIINGLGKSQRMEEALALYSEM-RERGIVPDLHTYNAMLLYLGLAGMVEEAE 1047
             PD + +N+      K+  + EA  L  EM  E+G +P   T   +       GM  +AE
Sbjct: 900  HPD-VEWNK------KAMYLAEAKGLLKEMVEEKGYIPCNQTIYWISAAFSKPGMKVDAE 928

Query: 1048 RMYEE 1050
            R  +E
Sbjct: 960  RFLKE 928

BLAST of Cp4.1LG06g02870 vs. TrEMBL
Match: D7SV48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06690 PE=4 SV=1)

HSP 1 Score: 1550.4 bits (4013), Expect = 0.0e+00
Identity = 739/1108 (66.70%), Postives = 901/1108 (81.32%), Query Frame = 1

Query: 3    STCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSM------ANWKKHRKKRKNVC 62
            S+CC+     C +  +  S  S    +E+LG  +   L +       NWKKHRKK+  VC
Sbjct: 10   SSCCSKFKYGCAVTGTKPSVLS---CNESLGGIKIGNLKVLPSGCRVNWKKHRKKQVGVC 69

Query: 63   RFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETC 122
             F +++  +  V VK K +  +S EE+ R LKS++D  +A S+F SV + P V HTTETC
Sbjct: 70   GFVIRSSFDVVV-VKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETC 129

Query: 123  NFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 182
            N+VLE LR H +VEDM  VF  MQK+II+R ++TYLTIFK L IRGGLR+  +AL+KMRK
Sbjct: 130  NYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRK 189

Query: 183  AGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSET 242
             GFVLN YSY GLIHLL++SGFC EAL+VY RMVSEG+KPSLKTYSALMVALGK+RD ET
Sbjct: 190  VGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIET 249

Query: 243  VMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLID 302
            VM LL+EMESLGLRPN+YT+TICIR+LGRAGKIDEAY I +RMD+ GCGPD+VTYTVLID
Sbjct: 250  VMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLID 309

Query: 303  ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 362
            ALCNAG+L +AKELF+KMKA+ HKPD+V YITLLDKF+D GDLD +KEFW +MEADGY+P
Sbjct: 310  ALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLP 369

Query: 363  DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 422
            DVVTFTIL+D LCK    DEAF T DVM+KQG+ PNLHTYNTLICGLL+  R+++AL+L 
Sbjct: 370  DVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELF 429

Query: 423  DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 482
            ++MESLG++ TAYTY++FIDY+GKSG++GKA++TFEKMK  GIVPNIVACNASLYSLAE 
Sbjct: 430  NSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQ 489

Query: 483  GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 542
            GRL EAK  FNGL++ GLAPD++TYN++M+CY K G+VDDA+ LL EM +NGC+P+V+++
Sbjct: 490  GRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVII 549

Query: 543  NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 602
            NSLID+LYKA RVDEAWKMF RMK+MKL+PTVVTYNTLL+GLGKEGRVQ+A  LF+ MI 
Sbjct: 550  NSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA 609

Query: 603  QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 662
              C PNTISFNTLLDC CKN E++LAL+M  +MTEM+C PDVLTYNTVIYGLIKENRVNY
Sbjct: 610  DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNY 669

Query: 663  AFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMG 722
            AFW FHQ+KK +YPD+VT+CTLLPG++K GRI DA ++AK+F++ V    + SFWEDLMG
Sbjct: 670  AFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMG 729

Query: 723  GTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIK 782
            G L+EAEI ++I+FAE LV N IC +DS LIPL++ LCK  +A+ AY +F   T +  I 
Sbjct: 730  GILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCIT 789

Query: 783  PTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFEL 842
            P++ +YN LI  LL+   TE AW LF  MKNA C PD FTYN+ LD  GK GKI ELF+L
Sbjct: 790  PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 849

Query: 843  YNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAK 902
            Y EM+ R CKPN IT+NIVI  L KSN+LDKA+D YYDL+S DF PTP TYGPL+DGL K
Sbjct: 850  YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 909

Query: 903  AGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKS 962
             GRLEEA Q FEEM DYGC PNC ++NIL+NG+GK GD+E A +LF+RMVKEGIRPDLKS
Sbjct: 910  LGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 969

Query: 963  YTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMR 1022
            Y+I+V+CLC+ G+VD+AL+YFEELK +GLDPD + YN +INGLG+SQR+EEAL+L+ EMR
Sbjct: 970  YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1029

Query: 1023 ERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPE 1082
             RGI PDL+TYNA++L LG+AGMVEEA +MYEELQL GLEP+VFTYNALIRG+S+SGNP+
Sbjct: 1030 NRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPD 1089

Query: 1083 HAYTVYKNMMVDGCNPNDGTYAQLPNPS 1105
             AY VYK MMV GC PN GT+AQLPN S
Sbjct: 1090 RAYAVYKKMMVGGCRPNTGTFAQLPNQS 1113

BLAST of Cp4.1LG06g02870 vs. TrEMBL
Match: A0A061GHJ7_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_036900 PE=4 SV=1)

HSP 1 Score: 1528.8 bits (3957), Expect = 0.0e+00
Identity = 741/1108 (66.88%), Postives = 891/1108 (80.42%), Query Frame = 1

Query: 3    STCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLS------MANWKKHRKKRKNVC 62
            + CCN    +C +  S  S  S   +S   G  +   L       M +WKK RK+R    
Sbjct: 10   TACCNSLSYSCILADSKVSAFSHKYVS--FGGRKNGNLEVWPYGCMVSWKKRRKQRLGF- 69

Query: 63   RFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETC 122
             + ++N  +  VA   K K  +S EE+LR LKS TDT  ALSYF SV + P V HTTETC
Sbjct: 70   -YVMKNSCQMVVA-NGKCKNSLSSEEVLRVLKSFTDTKSALSYFKSVAELPNVVHTTETC 129

Query: 123  NFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 182
            N +LE LR H  V  M+ VFEFMQK+II+RDL+TYLT+FK L IRGGLRQ    L++MR 
Sbjct: 130  NHMLEVLRAHRMVGAMSFVFEFMQKQIIKRDLNTYLTVFKGLDIRGGLRQAPFGLERMRN 189

Query: 183  AGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSET 242
            AGFVLNAYSYNGLIHLL+QSGF  EALEVY RMVSEGLKPSLKTYSALMVA GK+RD  T
Sbjct: 190  AGFVLNAYSYNGLIHLLLQSGFSREALEVYRRMVSEGLKPSLKTYSALMVASGKRRDIGT 249

Query: 243  VMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLID 302
            VM LL+EME+LGL+PN+YT+TICIRVLGRAGKI+EA+ I +RMD+ GCGPD+VTYTVLID
Sbjct: 250  VMDLLEEMETLGLKPNIYTFTICIRVLGRAGKINEAFGILKRMDDLGCGPDVVTYTVLID 309

Query: 303  ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 362
            ALCN GRL+ AKE+F+KMKA+ HKPD++ YITLLDKF+  GD+D VKEFW +MEADGY P
Sbjct: 310  ALCNTGRLDQAKEIFLKMKASSHKPDRITYITLLDKFSGCGDIDLVKEFWNEMEADGYAP 369

Query: 363  DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 422
            DVVTFTIL++  CK  + DEAF   +VMR QGILPNLHTYNTLICGLL+  R+++A +L 
Sbjct: 370  DVVTFTILIEAFCKVGNLDEAFDMLEVMRNQGILPNLHTYNTLICGLLRVNRVDEAFELF 429

Query: 423  DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 482
              +ESLG++PTAYTY++FI+Y+GKSGD GKA+ETFEKMKARGIVPN++ACNASLYSLAE+
Sbjct: 430  TNLESLGIKPTAYTYILFINYYGKSGDHGKALETFEKMKARGIVPNVIACNASLYSLAEA 489

Query: 483  GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 542
            GRL EAK +FNGL+ +GLAPDSVTYNMMMKC+SKVGQ+D+A+ LL EM+++ C+PDVI++
Sbjct: 490  GRLGEAKAIFNGLKSSGLAPDSVTYNMMMKCFSKVGQIDEAIKLLSEMLEDQCDPDVIII 549

Query: 543  NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 602
            NSLID L+KAGR DEAW+MF RMKDMKL+P+VVTYNTL+SGLGKEG+VQKAIELF SM +
Sbjct: 550  NSLIDMLFKAGRADEAWEMFYRMKDMKLAPSVVTYNTLISGLGKEGQVQKAIELFGSMTR 609

Query: 603  QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 662
              CSPNTI+FNTLLDC CKNDE+ LAL+M  KM   +C PDV TYNTVIYG IKENRV  
Sbjct: 610  HGCSPNTITFNTLLDCLCKNDEVVLALKMLYKMMTRNCSPDVRTYNTVIYGFIKENRVKD 669

Query: 663  AFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMG 722
            A W FHQ+KK +YPD+VT+CTLLPG+VK G+I DA KIA+DF+ Q     +RSFWEDLMG
Sbjct: 670  AIWVFHQMKKVLYPDYVTLCTLLPGVVKDGQIMDAFKIAQDFVYQDGIDTDRSFWEDLMG 729

Query: 723  GTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIK 782
            G L+EA +DKA++FAE L  N IC++DS L+PLIR LC+ K+A+ A  +F  FT N+ + 
Sbjct: 730  GILMEAGMDKAVLFAETLASNKICKDDSILVPLIRSLCRHKKAVLARDLFAKFTKNMGVI 789

Query: 783  PTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFEL 842
            PT  +YN LI  LLEV  TE AWDLF++MKN  C+PD  TYN+LLD  GK G I +LFE+
Sbjct: 790  PTPGAYNLLIDGLLEVVITEMAWDLFEEMKNIGCSPDVSTYNLLLDACGKSGSINKLFEV 849

Query: 843  YNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAK 902
            Y EM+   CKPN IT NIV+S L KSNN+DKA++ YYDL+S DF PTPCTYGPL+DGL K
Sbjct: 850  YEEMICHGCKPNTITQNIVLSGLVKSNNIDKAMNMYYDLISGDFSPTPCTYGPLIDGLLK 909

Query: 903  AGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKS 962
             GRLEEA QLFEEM DYGCK NCAI+NIL+NGYGKTGD++ A +LFKRMVKEGIRPDLKS
Sbjct: 910  LGRLEEAKQLFEEMVDYGCKANCAIYNILMNGYGKTGDVDAACELFKRMVKEGIRPDLKS 969

Query: 963  YTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMR 1022
            YTILV+CLCL GRVD+A++YFEELK TGLDPD ++YN +INGLG+S R+EEAL+L+ EM 
Sbjct: 970  YTILVDCLCLVGRVDDAMHYFEELKLTGLDPDLVSYNLMINGLGRSGRVEEALSLFDEMW 1029

Query: 1023 ERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPE 1082
             RGI PDL+TYN+++L LG  GMVE+A + YEELQL GLEP+V+TYNALIRGYSVSGNP+
Sbjct: 1030 SRGISPDLYTYNSLILNLGTVGMVEQAGKFYEELQLMGLEPNVYTYNALIRGYSVSGNPD 1089

Query: 1083 HAYTVYKNMMVDGCNPNDGTYAQLPNPS 1105
            HAY VYK MMV GC+PN GT+AQLPN S
Sbjct: 1090 HAYAVYKQMMVGGCSPNRGTFAQLPNQS 1112

BLAST of Cp4.1LG06g02870 vs. TrEMBL
Match: W9REB9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013194 PE=4 SV=1)

HSP 1 Score: 1515.7 bits (3923), Expect = 0.0e+00
Identity = 733/1094 (67.00%), Postives = 889/1094 (81.26%), Query Frame = 1

Query: 9    AFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFALQNPEEATV 68
            AF+  ++ A + S +S+G I  N+  +    L     KK R+KR  +  F ++ P+E   
Sbjct: 11   AFTESRVSALNFS-NSKGRIFGNVKVWACGYL--VKQKKLRRKRVGLSGFVMKIPDEG-- 70

Query: 69   AVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFVLEFLRVHEK 128
               E+T +  S EE+ R LKS+ D   A SYF SV   P V HTT+TCN++LE LR + +
Sbjct: 71   ---ERTVLVRSAEEVARVLKSILDPNCAFSYFMSVARLPKVVHTTDTCNYMLELLRTNGR 130

Query: 129  VEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNG 188
            VEDMA VF+FMQK++I R+L+TYLTIFK L IR G+RQ  IAL+KM +AGFVLNAYSYNG
Sbjct: 131  VEDMAVVFDFMQKQLINRNLNTYLTIFKGLYIRVGIRQAPIALEKMSRAGFVLNAYSYNG 190

Query: 189  LIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETVMVLLKEMESLG 248
            LI+L++Q+G   EAL VY RMVSEG KPSLKTYSALMVA GK+RD+ETVM LL+EME LG
Sbjct: 191  LIYLILQTGSFREALVVYKRMVSEGFKPSLKTYSALMVAFGKRRDTETVMGLLQEMEDLG 250

Query: 249  LRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAK 308
            LRPN+YT+TICIRVLGRAGKIDEAY I +RMD+EGCGPD++TYTVLIDALCNAG+L++A+
Sbjct: 251  LRPNIYTFTICIRVLGRAGKIDEAYGILKRMDDEGCGPDVITYTVLIDALCNAGKLDNAR 310

Query: 309  ELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTL 368
             LFVKMKA+ HKPDQV YITLLDK +D GDL+ VKE W +MEADGY PDVVTFTIL+D L
Sbjct: 311  ALFVKMKASSHKPDQVTYITLLDKLSDCGDLEGVKEIWAEMEADGYAPDVVTFTILIDAL 370

Query: 369  CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTA 428
            CKA +F++AF T ++M+++G+ PNLH+YNTLICGLL+A R+++ALKL   ME+LGV PTA
Sbjct: 371  CKAGNFEKAFDTLNIMKEKGVSPNLHSYNTLICGLLRASRLDEALKLFRNMEALGVMPTA 430

Query: 429  YTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNG 488
            YTY++FIDY+GKSGD+ KA+ETFEKMK RGIVPNIVACNASLYSL E GRL+EAK +F+G
Sbjct: 431  YTYILFIDYYGKSGDSSKAIETFEKMKRRGIVPNIVACNASLYSLTEMGRLQEAKEIFDG 490

Query: 489  LRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGR 548
            ++ NGLAPDSVTYN+MM+CYSKVG+VD+A+ LL EM+K GCEPD I+VN+LID LYKA R
Sbjct: 491  IKSNGLAPDSVTYNLMMRCYSKVGRVDEAIKLLSEMVKQGCEPDAIIVNTLIDMLYKAER 550

Query: 549  VDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNT 608
            VDEAW+MF  MK MKL+PTVVT+NTLL+ L KEG+V+KAIE+FESM    C PNT++FNT
Sbjct: 551  VDEAWQMFYGMKGMKLTPTVVTFNTLLASLRKEGQVRKAIEVFESMEDYGCPPNTVTFNT 610

Query: 609  LLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSM 668
            +LDC CKNDE+ LALE+  KM+ M+C PDV TYNT+IYGLI+ENRVNYAFWFFHQ+KKS+
Sbjct: 611  ILDCLCKNDEVGLALELLCKMSTMNCSPDVFTYNTIIYGLIRENRVNYAFWFFHQMKKSL 670

Query: 669  YPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAI 728
            +PD VT+ TL+PG+VK GRI DA +I K F  Q    +N  FWEDLMGG LV+AE D+AI
Sbjct: 671  FPDRVTLFTLIPGVVKDGRIEDAFRIVKSFAYQAGVHINGPFWEDLMGGILVKAEADRAI 730

Query: 729  IFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGE 788
             FAE+LV + IC +DS L+PLIR LCK K+ + A  +F  FT    IKPT+ +YNCLI  
Sbjct: 731  SFAEKLVSDKICLDDSILLPLIRALCKGKKTVDANHLFAKFTRTFGIKPTLETYNCLIEG 790

Query: 789  LLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPN 848
            LL VH  EKAWDLF +MK   CAPD FTYN+LL  H K G+I ELF LY EM+SR CKPN
Sbjct: 791  LLRVHANEKAWDLFNEMKRVGCAPDDFTYNLLLAAHCKFGEITELFGLYEEMISRGCKPN 850

Query: 849  VITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFE 908
             ITYNIVISSL KS+N+DKA+DFYYDLVS DF P+PCTYGPL+DGL K+ R EEAM+ FE
Sbjct: 851  TITYNIVISSLVKSDNVDKAIDFYYDLVSGDFSPSPCTYGPLIDGLLKSRRQEEAMRFFE 910

Query: 909  EMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAG 968
            EM DYGCKPNCAIFNILING+GK GD+E A  LFKRMVKEGIRPDLKSYTILV+CLCLAG
Sbjct: 911  EMGDYGCKPNCAIFNILINGFGKAGDVETACMLFKRMVKEGIRPDLKSYTILVDCLCLAG 970

Query: 969  RVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRERGIVPDLHTYN 1028
            R+D+AL+YFEELK +GL+PD ++YN +IN LG+S+R+EEAL+LY EMR R I PDL+TYN
Sbjct: 971  RIDDALHYFEELKLSGLNPDSVSYNLMINALGRSRRVEEALSLYDEMRSRRITPDLYTYN 1030

Query: 1029 AMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPEHAYTVYKNMMVD 1088
            +++L LG+AGMVE+A  MYEELQL GLEPDVFTYNALIR YS SGNP+HAY VYK MM+ 
Sbjct: 1031 SLILNLGIAGMVEQAGSMYEELQLRGLEPDVFTYNALIRAYSASGNPDHAYAVYKKMMIG 1090

Query: 1089 GCNPNDGTYAQLPN 1103
            GC+PN  T+AQLPN
Sbjct: 1091 GCSPNVSTFAQLPN 1096

BLAST of Cp4.1LG06g02870 vs. TrEMBL
Match: B9HB63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28060g PE=4 SV=2)

HSP 1 Score: 1493.4 bits (3865), Expect = 0.0e+00
Identity = 730/1108 (65.88%), Postives = 885/1108 (79.87%), Query Frame = 1

Query: 3    STCCNG-----AFSNCQIYASSCSGSSRGLISENLGDFRTATL-SMANWKKHRKKRKNVC 62
            S CC+      AFS  Q   S     +  L  E  G  R     S  NWKK+ KK+   C
Sbjct: 10   SMCCSCIDYSIAFSE-QNRLSDFRHKNGSLGGEKFGTLRVFPFGSNVNWKKNNKKQVAFC 69

Query: 63   RFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETC 122
             FAL++  E  V V  K +   S +E+L  L S++D   AL YF SV + P V HTTETC
Sbjct: 70   GFALKSQNEELV-VNGKPRKGSSSDEVLGVLHSISDPIHALFYFKSVGELPNVVHTTETC 129

Query: 123  NFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 182
            N +LE LRVH +VEDMA VF+ MQ+ IIRR++ TYL IFK+L IRGGLRQ   AL+KMR+
Sbjct: 130  NHMLEILRVHRRVEDMAFVFDLMQRHIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMRE 189

Query: 183  AGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSET 242
            AGFVLNAYSYNGLIH L+QSGFC EALEVY RMVSEGLKPSLKT+SALMVA GK+R+ +T
Sbjct: 190  AGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKT 249

Query: 243  VMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLID 302
            VM LL+EMES+GLRPN+YTYTICIRVLGR GKIDEAY I +RMD++GCGPD+VTYTVLID
Sbjct: 250  VMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 309

Query: 303  ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 362
            ALC A +L+ A  LF KMK++ HKPD+V Y+TLLDKF+D G LD V++ W +MEADGY P
Sbjct: 310  ALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAP 369

Query: 363  DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 422
            DVVTFTILV+ LCKA   +EAF   D MRKQG+LPNLHTYNTLI GLL+A R++DAL L 
Sbjct: 370  DVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLF 429

Query: 423  DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 482
              MESLGV+PTAYTY++ IDY GKSG  GKA+ETFEKMKARGI PNIVACNASLYSLAE 
Sbjct: 430  SNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEM 489

Query: 483  GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 542
            GRL EAK MFN L+ +GLAPDSVTYNMMMKCYSKVGQVD+A+ LL EM K  CEPDVIV+
Sbjct: 490  GRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVI 549

Query: 543  NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 602
            NSLID+LYKAGRV+EAW+MF RM++M L+PTVVTYN LL+GLGKEG++QKA++LFESM  
Sbjct: 550  NSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNG 609

Query: 603  QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 662
              CSPNTI+FNTLLDC CKNDE++LAL+MF KMT M+C+PDVLT+NT+I+G IK+N++  
Sbjct: 610  HGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKN 669

Query: 663  AFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMG 722
            A W FHQ+KK + PDHVT+CTLLPG++KSG+I DA +I +DF  QV   ++RSFWED+MG
Sbjct: 670  AIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMG 729

Query: 723  GTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIK 782
            G L EA  +KAI+F E LV   IC++DS LIP+I+VLCK K+   A  +F  FT  L +K
Sbjct: 730  GILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVK 789

Query: 783  PTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFEL 842
            PT+  YN LI   LEVH  E AW+LF++MK+A CAPDTFTYN L+D HGK GKI ELF+L
Sbjct: 790  PTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDL 849

Query: 843  YNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAK 902
            Y+EM++R CKPN ITYN+VIS+L KSN LDKA+D YY+LVS DF PTPCT+GPL+DGL K
Sbjct: 850  YDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLK 909

Query: 903  AGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKS 962
            +GRL++A ++F+ M  YGC+PN AI+NIL+NGYGK G ++ A + FKRMVKEGIRPDLKS
Sbjct: 910  SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKS 969

Query: 963  YTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMR 1022
            YTILV+ LC+AGRVD+AL+YFE+LK  GLDPD +AYN +INGLG+SQR EEAL+L+ EM+
Sbjct: 970  YTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQ 1029

Query: 1023 ERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPE 1082
             RGIVPDL+TYN+++L LG+ GM+EEA ++YEELQ  GL+P+VFTYNALIRGY++SGN E
Sbjct: 1030 NRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSE 1089

Query: 1083 HAYTVYKNMMVDGCNPNDGTYAQLPNPS 1105
             AY +YK MMV GC+PN GT+AQLPN S
Sbjct: 1090 LAYGIYKKMMVGGCDPNTGTFAQLPNQS 1115

BLAST of Cp4.1LG06g02870 vs. TrEMBL
Match: A0A0D2QA82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G063400 PE=4 SV=1)

HSP 1 Score: 1491.9 bits (3861), Expect = 0.0e+00
Identity = 723/1112 (65.02%), Postives = 881/1112 (79.23%), Query Frame = 1

Query: 3    STCCNGAFSNCQIYASSCSGSSRGLIS---ENLGDFRTATLS-MANWKKHRKKR------ 62
            S CCN    +C +  S  S  S   +S     +G F+      M +WKK RK++      
Sbjct: 10   SACCNSLNYSCVLVDSKVSAFSHKNVSFGGRKIGKFKVFPDGYMVSWKKRRKQQLRFYVM 69

Query: 63   KNVCRFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHT 122
            KN C   L N          K +  +S  E+ R LKS++D   A SYF SV + P V HT
Sbjct: 70   KNSCEMVLANG---------KCRNSLSSNEVSRVLKSISDPKSAFSYFESVAELPNVVHT 129

Query: 123  TETCNFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALK 182
            TETCN +LE LRVH  V +M  VFEFMQK+IIRRDL+TYLT+FK L IRGGLRQ    L+
Sbjct: 130  TETCNHMLEVLRVHRMVGEMRFVFEFMQKQIIRRDLNTYLTVFKGLDIRGGLRQAPFGLE 189

Query: 183  KMRKAGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKR 242
            +MR AG VLNAYSYNGLIHLL+QSG   EAL++Y RMVSEGLKPSLKTYSALMVA GK+R
Sbjct: 190  RMRDAGIVLNAYSYNGLIHLLLQSGLVREALQIYRRMVSEGLKPSLKTYSALMVASGKRR 249

Query: 243  DSETVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYT 302
            D  TVM LL+EMESLGL+PNVYT+TICIRVLGRAGKIDEA+ I +RMD+ GCGPD+VTYT
Sbjct: 250  DIGTVMDLLEEMESLGLKPNVYTFTICIRVLGRAGKIDEAFGILKRMDDLGCGPDVVTYT 309

Query: 303  VLIDALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEAD 362
            VLIDALCN GRL  AKE+F+KMKA+ HKPD+V YITLLDKF+D GD+D VKEFW +M+AD
Sbjct: 310  VLIDALCNTGRLGQAKEIFLKMKASSHKPDRVTYITLLDKFSDSGDVDLVKEFWNEMKAD 369

Query: 363  GYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDA 422
            GY PDVVT TIL+D  CK  + DEAF   +VMR+QG+ PNLHTYNTLICGLL+  R+ +A
Sbjct: 370  GYAPDVVTCTILIDAFCKVGNLDEAFDMLEVMREQGVSPNLHTYNTLICGLLRLNRVGEA 429

Query: 423  LKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYS 482
            L+L   +ESLG++PTA+TY++FI+Y+GKSGD G+A++TF+KMKARGIVPN++ACNASLYS
Sbjct: 430  LELFTNLESLGIKPTAFTYILFINYYGKSGDHGEALKTFKKMKARGIVPNVIACNASLYS 489

Query: 483  LAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPD 542
            LA++GRL EAK +FN L+ +GLAPDSVTYNMM+KCYSKVGQVDDA+ LL EM++N CEPD
Sbjct: 490  LAQAGRLSEAKAIFNELKSSGLAPDSVTYNMMVKCYSKVGQVDDAIKLLSEMLENQCEPD 549

Query: 543  VIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 602
            V+++NSLID L+KAGRVDEAW MF +MK+M L P+VVTYNTL+SGLGKEG+V+KAIELFE
Sbjct: 550  VMIINSLIDMLFKAGRVDEAWVMFHKMKEMALVPSVVTYNTLISGLGKEGQVKKAIELFE 609

Query: 603  SMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKEN 662
            SM +  C PNTI+FN LLDC CKNDE++LAL+M  KMT  +C PDVLTYNT+IYG IK N
Sbjct: 610  SMTRHGCRPNTITFNILLDCLCKNDEVDLALKMLYKMTPGNCAPDVLTYNTIIYGFIKAN 669

Query: 663  RVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWE 722
            RV  A W FHQ+KK +YPD+VT+CTLLPG+VK G++ DA KIA+DFI+Q     N SFWE
Sbjct: 670  RVKDAIWVFHQMKKLLYPDYVTLCTLLPGVVKDGQLMDAFKIAQDFIHQDGIDTNGSFWE 729

Query: 723  DLMGGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTN 782
            DLM G L EA +DKA+ FAE L  N IC+++S L+PLIR LC+ K+A++A ++F NFT N
Sbjct: 730  DLMSGILTEAGMDKAVRFAETLASNKICKDESILLPLIRNLCRHKKAVFARELFANFTKN 789

Query: 783  LEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAE 842
            + +  T  +YN LI  LL+VH TE AW+LF++MK+  C+PD  TYN+L+D  GK G+  +
Sbjct: 790  MGVIATPTAYNLLIDGLLDVHITEMAWELFEEMKSIGCSPDISTYNLLIDACGKSGQTDK 849

Query: 843  LFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLD 902
            LFE+Y EM  R CKPN IT+NIV+S LAKSNN++KA++ YYDL+S DF PTPCTYGPL+D
Sbjct: 850  LFEVYEEMTFRGCKPNTITHNIVLSGLAKSNNIEKAMNMYYDLISGDFRPTPCTYGPLID 909

Query: 903  GLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRP 962
            GL K GRLE+A QLFEEM +YGCK NCAI+NIL+NGYGK GD++ A  LFKRM KEGIRP
Sbjct: 910  GLLKLGRLEDAKQLFEEMEEYGCKANCAIYNILVNGYGKAGDVDTACDLFKRMAKEGIRP 969

Query: 963  DLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1022
            DLKSYTILV+CLCL GRVD+AL+YFEE+K TGLDPD ++YN ++NGLGKS R+EEAL+L+
Sbjct: 970  DLKSYTILVDCLCLVGRVDDALHYFEEMKLTGLDPDLVSYNLMLNGLGKSGRIEEALSLF 1029

Query: 1023 SEMRERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVS 1082
             EMR RGI PDL+TYN+++L LG  GMVE+A + YEELQL GLEP+VFTYNALIRGYSVS
Sbjct: 1030 DEMRNRGITPDLYTYNSLILNLGTVGMVEQAGKFYEELQLMGLEPNVFTYNALIRGYSVS 1089

Query: 1083 GNPEHAYTVYKNMMVDGCNPNDGTYAQLPNPS 1105
            GN +HAY VYK MMV GC+PN GT AQLPN S
Sbjct: 1090 GNSDHAYAVYKQMMVGGCSPNRGTIAQLPNQS 1112

BLAST of Cp4.1LG06g02870 vs. TAIR10
Match: AT4G31850.1 (AT4G31850.1 proton gradient regulation 3)

HSP 1 Score: 1411.0 bits (3651), Expect = 0.0e+00
Identity = 684/1075 (63.63%), Postives = 850/1075 (79.07%), Query Frame = 1

Query: 33   GDFRTATLSMANWKKHRKKRKNVCRFALQNPEEATVAVKEKTKIP--VSEEEILRALKSM 92
            G  +   L + + KKH +++   C        + + ++  K+  P   S EE+ R LKS 
Sbjct: 36   GGLKFHALKIGSRKKHWRRKSMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSF 95

Query: 93   TDTTRALSYFYSVPDFPCVQHTTETCNFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLST 152
             DT  + SYF SV     + HTTETCN++LE LRV  K+E+MA VF+ MQK+II+RD +T
Sbjct: 96   PDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNT 155

Query: 153  YLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMV 212
            YLTIFK+LS++GGL+Q   AL+KMR+ GFVLNAYSYNGLIHLL++S FC+EA+EVY RM+
Sbjct: 156  YLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMI 215

Query: 213  SEGLKPSLKTYSALMVALGKKRDSETVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKID 272
             EG +PSL+TYS+LMV LGK+RD ++VM LLKEME+LGL+PNVYT+TICIRVLGRAGKI+
Sbjct: 216  LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKIN 275

Query: 273  EAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVIYITLL 332
            EAYEI +RMD+EGCGPD+VTYTVLIDALC A +L+ AKE+F KMK   HKPD+V YITLL
Sbjct: 276  EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL 335

Query: 333  DKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGIL 392
            D+F+D  DLD+VK+FW +ME DG++PDVVTFTILVD LCKA +F EAF T DVMR QGIL
Sbjct: 336  DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL 395

Query: 393  PNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVET 452
            PNLHTYNTLICGLL+  R++DAL+L   MESLGV+PTAYTY++FIDY+GKSGD+  A+ET
Sbjct: 396  PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455

Query: 453  FEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSK 512
            FEKMK +GI PNIVACNASLYSLA++GR REAK +F GL++ GL PDSVTYNMMMKCYSK
Sbjct: 456  FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515

Query: 513  VGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVT 572
            VG++D+A+ LL EM++NGCEPDVIVVNSLI++LYKA RVDEAWKMF RMK+MKL PTVVT
Sbjct: 516  VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 573  YNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMT 632
            YNTLL+GLGK G++Q+AIELFE M+++ C PNTI+FNTL DC CKNDE+ LAL+M  KM 
Sbjct: 576  YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 633  EMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGD 692
            +M C PDV TYNT+I+GL+K  +V  A  FFHQ+KK +YPD VT+CTLLPG+VK+  I D
Sbjct: 636  DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIED 695

Query: 693  AIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICRE-DSFLIPL 752
            A KI  +F+     +    FWEDL+G  L EA ID A+ F+E LV NGICR+ DS L+P+
Sbjct: 696  AYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPI 755

Query: 753  IRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAA 812
            IR  CK      A  +FE FT +L ++P + +YN LIG LLE    E A D+F  +K+  
Sbjct: 756  IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTG 815

Query: 813  CAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKAL 872
            C PD  TYN LLD +GK GKI ELFELY EM + +C+ N IT+NIVIS L K+ N+D AL
Sbjct: 816  CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875

Query: 873  DFYYDLVSS-DFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILING 932
            D YYDL+S  DF PT CTYGPL+DGL+K+GRL EA QLFE M DYGC+PNCAI+NILING
Sbjct: 876  DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935

Query: 933  YGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPD 992
            +GK G+ + A  LFKRMVKEG+RPDLK+Y++LV+CLC+ GRVDE L+YF+ELK +GL+PD
Sbjct: 936  FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995

Query: 993  FIAYNRIINGLGKSQRMEEALALYSEMR-ERGIVPDLHTYNAMLLYLGLAGMVEEAERMY 1052
             + YN IINGLGKS R+EEAL L++EM+  RGI PDL+TYN+++L LG+AGMVEEA ++Y
Sbjct: 996  VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055

Query: 1053 EELQLAGLEPDVFTYNALIRGYSVSGNPEHAYTVYKNMMVDGCNPNDGTYAQLPN 1103
             E+Q AGLEP+VFT+NALIRGYS+SG PEHAY VY+ M+  G +PN GTY QLPN
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110

BLAST of Cp4.1LG06g02870 vs. TAIR10
Match: AT3G06920.1 (AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 347.8 bits (891), Expect = 2.4e-95
Identity = 205/719 (28.51%), Postives = 348/719 (48.40%), Query Frame = 1

Query: 338  DLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYN 397
            + D + +  G+M   G+ P V T   +V    KA    E +    +MRK    P    Y 
Sbjct: 113  NFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYT 172

Query: 398  TLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKAR 457
            TLI         +  L L   M+ LG +PT + +   I  F K G    A+   ++MK+ 
Sbjct: 173  TLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSS 232

Query: 458  GIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDA 517
             +  +IV  N  + S  + G++  A   F+ +  NGL PD VTY  M+    K  ++D+A
Sbjct: 233  SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEA 292

Query: 518  VNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSG 577
            V +   + KN   P     N++I     AG+ DEA+ + +R +     P+V+ YN +L+ 
Sbjct: 293  VEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352

Query: 578  LGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPD 637
            L K G+V +A+++FE M K+  +PN  ++N L+D  C+  +++ A E+   M +    P+
Sbjct: 353  LRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 412

Query: 638  VLTYNTVIYGLIKENRVNYAFWFFHQLK-KSMYPDHVTICTLLPGIVKSGRIGDAIKIAK 697
            V T N ++  L K  +++ A   F ++  K   PD +T C+L+ G+ K GR+ DA K+ +
Sbjct: 413  VRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 472

Query: 698  DFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQ 757
              ++    R N   +  L+         +      ++++      +   L   +  + K 
Sbjct: 473  KMLDS-DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 532

Query: 758  KRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFT 817
                    +FE         P   SY+ LI  L++  +  + ++LF  MK   C  DT  
Sbjct: 533  GEPEKGRAMFEEIKAR-RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 592

Query: 818  YNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLV 877
            YN+++D   K GK+ + ++L  EM ++  +P V+TY  VI  LAK + LD+A   + +  
Sbjct: 593  YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 652

Query: 878  SSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIE 937
            S         Y  L+DG  K GR++EA  + EE+   G  PN   +N L++   K  +I 
Sbjct: 653  SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN 712

Query: 938  IAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRII 997
             A   F+ M +    P+  +Y IL+  LC   + ++A  +++E++  G+ P  I+Y  +I
Sbjct: 713  EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 772

Query: 998  NGLGKSQRMEEALALYSEMRERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGL 1056
            +GL K+  + EA AL+   +  G VPD   YNAM+  L       +A  ++EE +  GL
Sbjct: 773  SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828

BLAST of Cp4.1LG06g02870 vs. TAIR10
Match: AT5G55840.1 (AT5G55840.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 337.0 bits (863), Expect = 4.3e-92
Identity = 219/836 (26.20%), Postives = 390/836 (46.65%), Query Frame = 1

Query: 240  LLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALC 299
            + + M   G  P+VYT    +  + ++G+    +   + M +    PD+ T+ +LI+ LC
Sbjct: 185  IFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLC 244

Query: 300  NAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVV 359
              G  E +  L  KM+ +G+ P  V Y T+L  +   G      E    M++ G   DV 
Sbjct: 245  AEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVC 304

Query: 360  TFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTM 419
            T+ +L+  LC++    + +     MRK+ I PN  TYNTLI G    G++  A +LL+ M
Sbjct: 305  TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM 364

Query: 420  ESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRL 479
             S G+ P   T+   ID     G+  +A++ F  M+A+G+ P+ V+    L  L ++   
Sbjct: 365  LSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 424

Query: 480  REAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSL 539
              A+  +  ++ NG+    +TY  M+    K G +D+AV LL EM K+G +PD++  ++L
Sbjct: 425  DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 484

Query: 540  IDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRC 599
            I+   K GR   A ++  R+  + LSP  + Y+TL+    + G +++AI ++E+MI +  
Sbjct: 485  INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH 544

Query: 600  SPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFW 659
            + +  +FN L+   CK  ++  A E    MT     P+ ++++ +I G         AF 
Sbjct: 545  TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS 604

Query: 660  FFHQLKK-SMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGT 719
             F ++ K   +P   T  +LL G+ K G + +A K  K  ++ V   V+   +  L+   
Sbjct: 605  VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS-LHAVPAAVDTVMYNTLLTAM 664

Query: 720  LVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPT 779
                 + KA+    E+V   I  +      LI  LC++ + + A    +       + P 
Sbjct: 665  CKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPN 724

Query: 780  VASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYN 839
               Y C +  + +    +      + M N    PD  T N ++D + ++GKI +  +L  
Sbjct: 725  KVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLP 784

Query: 840  EMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAG 899
            EM ++   PN+ TYNI++   +K  ++  +   Y  ++ +   P   T   L+ G+ ++ 
Sbjct: 785  EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 844

Query: 900  RLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYT 959
             LE  +++ +     G + +   FN+LI+     G+I  A  L K M   GI  D  +  
Sbjct: 845  MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCD 904

Query: 960  ILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRER 1019
             +V  L    R  E+     E+   G+ P+   Y  +INGL +   ++ A  +  EM   
Sbjct: 905  AMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAH 964

Query: 1020 GIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGN 1075
             I P     +AM+  L   G  +EA  +   +    L P + ++  L+     +GN
Sbjct: 965  KICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 1019

BLAST of Cp4.1LG06g02870 vs. TAIR10
Match: AT5G59900.1 (AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 319.3 bits (817), Expect = 9.2e-87
Identity = 219/815 (26.87%), Postives = 396/815 (48.59%), Query Frame = 1

Query: 178 GFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETV 237
           GF  +  S+  LIH L+++     A  +   ++   LKPS   ++ L     K + S + 
Sbjct: 99  GFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPS-DVFNVLFSCYEKCKLSSSS 158

Query: 238 MVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRM-DEEGCGPDLVTYTVLID 297
                            ++ + I+   R+ ++ +   +F+ M  +    P++ T + L+ 
Sbjct: 159 -----------------SFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLH 218

Query: 298 ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 357
            L        A ELF  M + G +PD  IY  ++    +  DL   KE    MEA G   
Sbjct: 219 GLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDV 278

Query: 358 DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 417
           ++V + +L+D LCK +   EA      +  + + P++ TY TL+ GL K    E  L+++
Sbjct: 279 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 338

Query: 418 DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 477
           D M  L   P+       ++   K G   +A+   +++   G+ PN+   NA + SL + 
Sbjct: 339 DEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 398

Query: 478 GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 537
            +  EA+ +F+ + + GL P+ VTY++++  + + G++D A++ L EM+  G +  V   
Sbjct: 399 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 458

Query: 538 NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 597
           NSLI+   K G +  A      M + KL PTVVTY +L+ G   +G++ KA+ L+  M  
Sbjct: 459 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 518

Query: 598 QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 657
           +  +P+  +F TLL    +   I  A+++F++M E + KP+ +TYN +I G  +E  ++ 
Sbjct: 519 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 578

Query: 658 AFWFFHQL-KKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLM 717
           AF F  ++ +K + PD  +   L+ G+  +G+  +A K+  D +++    +N   +  L+
Sbjct: 579 AFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLL 638

Query: 718 GGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQK-RALYAYQIFENFTTNLE 777
            G   E ++++A+   +E+V  G+  +      LI    K K R L+   + E     L 
Sbjct: 639 HGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGL- 698

Query: 778 IKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELF 837
            KP    Y  +I    +    ++A+ ++  M N  C P+  TY  +++   K G + E  
Sbjct: 699 -KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 758

Query: 838 ELYNEMVSRKCKPNVITYNIVISSLAKSN-NLDKALDFYYDLVSSDFCPTPCTYGPLLDG 897
            L ++M      PN +TY   +  L K   ++ KA++ +  ++      T  TY  L+ G
Sbjct: 759 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANT-ATYNMLIRG 818

Query: 898 LAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPD 957
             + GR+EEA +L   M   G  P+C  +  +IN   +  D++ A +L+  M ++GIRPD
Sbjct: 819 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 878

Query: 958 LKSYTILVECLCLAGRVDEALYYFEELKSTGLDPD 989
             +Y  L+   C+AG + +A     E+   GL P+
Sbjct: 879 RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891

BLAST of Cp4.1LG06g02870 vs. TAIR10
Match: AT5G14770.1 (AT5G14770.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-84
Identity = 235/905 (25.97%), Postives = 413/905 (45.64%), Query Frame = 1

Query: 148  LSTYLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALE-VY 207
            +S + T+F+       L      L  M   G V ++  +N LIH    +G   + +  +Y
Sbjct: 58   VSLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIY 117

Query: 208  GRMVSEGLKPSLKTYSALMVALGKK-RDSETVMVLLKEMESLGLRPNVYTYTICIRVLGR 267
             +M++ G+ P +   + L+ +  K  R S  + +L   + S+    +  TY   I  L  
Sbjct: 118  SKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVISI----DTVTYNTVISGLCE 177

Query: 268  AGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVI 327
             G  DEAY+    M + G  PD V+Y  LID  C  G        FV+ KA   +  ++ 
Sbjct: 178  HGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGN-------FVRAKALVDEISELN 237

Query: 328  YITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMR 387
             IT     + + +L  ++E +  M   G+ PDVVTF+ +++ LCK     E       M 
Sbjct: 238  LITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREME 297

Query: 388  KQGILPNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTG 447
            +  + PN  TY TL+  L KA     AL L   M   G+      Y + +D   K+GD  
Sbjct: 298  EMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLR 357

Query: 448  KAVETFEKMKARGIVPNIVACNASLYSLAESGRLREAKNMFNGLRENGLAPDSVTYNMMM 507
            +A +TF+ +     VPN+V   A +  L ++G L  A+ +   + E  + P+ VTY+ M+
Sbjct: 358  EAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMI 417

Query: 508  KCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLS 567
              Y K G +++AV+LL +M      P+     ++ID L+KAG+ + A ++   M+ + + 
Sbjct: 418  NGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVE 477

Query: 568  PTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEM 627
                  + L++ L + GR+++   L + M+ +  + + I++ +L+D F K  + E AL  
Sbjct: 478  ENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAW 537

Query: 628  FSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKS 687
              +M E     DV++YN +I G++K  +V   + +    +K + PD  T   ++    K 
Sbjct: 538  AEEMQERGMPWDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQ 597

Query: 688  GRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAIIFAEELVLNGICREDSF 747
            G     +K+  D +     + +      ++G      ++++AI    +++L  I    + 
Sbjct: 598  GDSEGILKL-WDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTT 657

Query: 748  LIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDM 807
                +    K KRA   ++  E    +  IK +   YN LI  L ++  T+KA  +  DM
Sbjct: 658  YRIFLDTSSKHKRADAIFKTHETL-LSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDM 717

Query: 808  KNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNL 867
            +     PDT T+N L+  +     + +    Y+ M+     PNV TYN +I  L+ +  +
Sbjct: 718  EARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLI 777

Query: 868  DKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNIL 927
             +   +  ++ S    P   TY  L+ G AK G ++ +M ++ EM   G  P  + +N+L
Sbjct: 778  KEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVL 837

Query: 928  INGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGRVDEALYYFEELKSTGL 987
            I+ +   G +  A +L K M K G+ P+  +Y  ++  LC                    
Sbjct: 838  ISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLC----------------KLCT 897

Query: 988  DPDFIAYNRIINGLGKSQRMEEALALYSEM-RERGIVPDLHTYNAMLLYLGLAGMVEEAE 1047
             PD + +N+      K+  + EA  L  EM  E+G +P   T   +       GM  +AE
Sbjct: 898  HPD-VEWNK------KAMYLAEAKGLLKEMVEEKGYIPCNQTIYWISAAFSKPGMKVDAE 926

Query: 1048 RMYEE 1050
            R  +E
Sbjct: 958  RFLKE 926

BLAST of Cp4.1LG06g02870 vs. NCBI nr
Match: gi|659104199|ref|XP_008452843.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucumis melo])

HSP 1 Score: 1982.6 bits (5135), Expect = 0.0e+00
Identity = 974/1104 (88.22%), Postives = 1035/1104 (93.75%), Query Frame = 1

Query: 1    MFSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
            MF TCCNGAFS CQIY SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11   MFGTCCNGAFSECQIYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61   QNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFVL 120
            QNPE+  V VK KT+I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNF+L
Sbjct: 71   QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121  EFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
            EFLRVH+KVEDMAAVF+ MQKKIIRRDL+TYLTIFKALSIRGGLRQ+T  L KMR+AGFV
Sbjct: 131  EFLRVHDKVEDMAAVFDLMQKKIIRRDLNTYLTIFKALSIRGGLRQMTTVLNKMRRAGFV 190

Query: 181  LNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETVMVL 240
            LNAYSYNGLIHLLIQSGFC EALEVY RMVSEGLKPSLKTYSALMVALGKKRDSETV+VL
Sbjct: 191  LNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSETVIVL 250

Query: 241  LKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCN 300
            LKEME LGLRPNVYT+TICIRVLGRAGKIDEAYEIFRRMD+EGCGPDLVTYTVLIDALCN
Sbjct: 251  LKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCN 310

Query: 301  AGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVT 360
            AG+LE+AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDT KEFW QMEADGYMPDVVT
Sbjct: 311  AGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWNQMEADGYMPDVVT 370

Query: 361  FTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTME 420
            FTILVD LCKA DF EAFATFDVMRKQGILPNLHTYN+LICGLL+AGRIEDALKLLDTME
Sbjct: 371  FTILVDALCKAGDFVEAFATFDVMRKQGILPNLHTYNSLICGLLRAGRIEDALKLLDTME 430

Query: 421  SLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRLR 480
            S+GV+PTAYTY+IFIDYFGKSGDTGKAVETFEKMKA+GIVPNIVACNASLYSLAE GRLR
Sbjct: 431  SVGVRPTAYTYIIFIDYFGKSGDTGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR 490

Query: 481  EAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLI 540
            EAK MFNGLRENGLAPDSVTYNMMMKCYSKVGQVD+AVNLL EMI+NGCEPDVIVVNSLI
Sbjct: 491  EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 550

Query: 541  DSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCS 600
            DSLYKAGRVDEAW+MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI+QRCS
Sbjct: 551  DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEQRCS 610

Query: 601  PNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWF 660
            PNTISFNTLLDCFCKNDE+ELAL+MFSKMT MDCKPDVLTYNTVIYGLIKEN+VN+AFWF
Sbjct: 611  PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWF 670

Query: 661  FHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
            FHQLKKS++PDHVTICTLLPG+VK GRIGDAIKIA+DF+ QV+FRVNRSFWEDLMGGTLV
Sbjct: 671  FHQLKKSIHPDHVTICTLLPGLVKCGRIGDAIKIARDFMYQVRFRVNRSFWEDLMGGTLV 730

Query: 721  EAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
            EAE+DKAIIFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIFE FT  L I PT+A
Sbjct: 731  EAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFEKFTKKLGISPTLA 790

Query: 781  SYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEM 840
            SYNCLIGELLEV YTEKAWDLFQDMKN  CAPDTFTYNMLL VHGK GKI ELFELY EM
Sbjct: 791  SYNCLIGELLEVRYTEKAWDLFQDMKNVGCAPDTFTYNMLLAVHGKSGKITELFELYKEM 850

Query: 841  VSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRL 900
            +SR+CKP+ ITYNI+ISSLAKSNNLDKALDF+YDLVS+DF PTP TYGPL+DGLAK GRL
Sbjct: 851  ISRRCKPDAITYNIIISSLAKSNNLDKALDFFYDLVSNDFRPTPRTYGPLIDGLAKVGRL 910

Query: 901  EEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTIL 960
            EEAM LFEEM DYGCKPNCAIFNILINGYGK GD E A QLFKRMV EGIRPDLKSYTIL
Sbjct: 911  EEAMWLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 970

Query: 961  VECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRERGI 1020
            V+CLCLAGRVDEALYYF ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY+EMR RGI
Sbjct: 971  VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1030

Query: 1021 VPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPEHAYT 1080
            VPDL+TYN+++L LGLAGMVE+A++MYEELQLAGLEPDVFTYNALIRGYS+S NPEHAYT
Sbjct: 1031 VPDLYTYNSLMLNLGLAGMVEQAKKMYEELQLAGLEPDVFTYNALIRGYSMSENPEHAYT 1090

Query: 1081 VYKNMMVDGCNPNDGTYAQLPNPS 1105
            VYKNMMVDGCNPN GTYAQLPN S
Sbjct: 1091 VYKNMMVDGCNPNIGTYAQLPNQS 1113

BLAST of Cp4.1LG06g02870 vs. NCBI nr
Match: gi|778696900|ref|XP_004145582.2| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucumis sativus])

HSP 1 Score: 1972.2 bits (5108), Expect = 0.0e+00
Identity = 970/1104 (87.86%), Postives = 1031/1104 (93.39%), Query Frame = 1

Query: 1    MFSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
            MF TCCNGAFS CQ+Y SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11   MFGTCCNGAFSECQVYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61   QNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFVL 120
            QNPE+  V VK KT+I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNF+L
Sbjct: 71   QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121  EFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
            EFLRVH+KVEDMAAVFEFMQKKIIRRDL TYLTIFKALSIRGGLRQ+T  L KMRKAGFV
Sbjct: 131  EFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFV 190

Query: 181  LNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSETVMVL 240
            LNAYSYNGLIHLLIQSGFC EALEVY RMVSEGLKPSLKTYSALMVALGKKRDSE VMVL
Sbjct: 191  LNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVL 250

Query: 241  LKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCN 300
            LKEME LGLRPNVYT+TICIRVLGRAGKIDEAYEIFRRMD+EGCGPDLVTYTVLIDALCN
Sbjct: 251  LKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCN 310

Query: 301  AGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMPDVVT 360
            AG+LE+AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDT KEFW QMEADGYMPDVVT
Sbjct: 311  AGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVT 370

Query: 361  FTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTME 420
            FTILVD LCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL+AGRIEDALKLLDTME
Sbjct: 371  FTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTME 430

Query: 421  SLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAESGRLR 480
            S+GVQPTAYTY+ FIDYF KSG+T KAVETFEK+KA+GIVPNIVA NASLYSLAE GRLR
Sbjct: 431  SVGVQPTAYTYITFIDYFXKSGETVKAVETFEKIKAKGIVPNIVAXNASLYSLAEMGRLR 490

Query: 481  EAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLI 540
            EAK MFNGLRENGLAPDSVTYNMMMKCYSKVGQVD+AVNLL EMI+NGCE DVIVVNSLI
Sbjct: 491  EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCELDVIVVNSLI 550

Query: 541  DSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIKQRCS 600
            DSLYKAGRVDEAW+MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI+++CS
Sbjct: 551  DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCS 610

Query: 601  PNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWF 660
            PNTISFNTLLDCFCKNDE+ELAL+MFSKMT MDCKPDVLTYNTVIYGLIKEN+VN+AFWF
Sbjct: 611  PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWF 670

Query: 661  FHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
            FHQLKKSM+PDHVTICTLLPG+VK G+IGDAI IA+DF+ QV+FRVNRSFWEDLMGGTLV
Sbjct: 671  FHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLV 730

Query: 721  EAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
            EAE+DKAIIFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIF+ FT  L I PT+A
Sbjct: 731  EAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLA 790

Query: 781  SYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFELYNEM 840
            SYNCLIGELLEVHYTEKAWDLF+DMKN  CAPD FT+NMLL VHGK GKI ELFELY EM
Sbjct: 791  SYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM 850

Query: 841  VSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRL 900
            +SR+CKP+ ITYNIVISSLAKSNNLDKALDF+YDLVSSDF PTP TYGPL+DGLAK GRL
Sbjct: 851  ISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL 910

Query: 901  EEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTIL 960
            EEAM+LFEEM DYGCKPNCAIFNILINGYGK GD E A QLFKRMV EGIRPDLKSYTIL
Sbjct: 911  EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 970

Query: 961  VECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRERGI 1020
            V+CLCLAGRVDEALYYF ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY+EMR RGI
Sbjct: 971  VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1030

Query: 1021 VPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPEHAYT 1080
            VPDL+TYN+++L LGLAGMVE+A+RMYEELQLAGLEPDVFTYNALIRGYS+S NPEHAYT
Sbjct: 1031 VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYT 1090

Query: 1081 VYKNMMVDGCNPNDGTYAQLPNPS 1105
            VYKNMMVDGCNPN GTYAQLPN S
Sbjct: 1091 VYKNMMVDGCNPNIGTYAQLPNQS 1113

BLAST of Cp4.1LG06g02870 vs. NCBI nr
Match: gi|657971683|ref|XP_008377633.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Malus domestica])

HSP 1 Score: 1563.5 bits (4047), Expect = 0.0e+00
Identity = 757/1106 (68.44%), Postives = 910/1106 (82.28%), Query Frame = 1

Query: 3    STCCNG-----AFSNCQIYASSCSGSSRGLISENLGDFRT-ATLSMANWKKHRKKRKNVC 62
            S CC+      AF++ +I+A S       L + N G  +     S++N KK+ KK    C
Sbjct: 10   SMCCSSVNXSVAFTDDRIFAGS-------LKARNFGKLKVWGCGSLSNLKKNXKKXMGFC 69

Query: 63   RFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETC 122
             F ++  EE  V  K+  KI VS EE++R LKS +D   AL+ F S  + P V HTTETC
Sbjct: 70   GFVMKRSEEEVVVGKKSPKISVSSEEVVRVLKSASDPKSALALFKSFAELPSVVHTTETC 129

Query: 123  NFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 182
            N++LE LRV  +VEDMA VF+ MQK+II R L TYLTIFK L +RGG+RQ   AL++MRK
Sbjct: 130  NYMLEVLRVDRRVEDMAYVFDLMQKQIINRSLETYLTIFKGLDVRGGIRQAPFALEEMRK 189

Query: 183  AGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSET 242
            AGFVLNAYSYNGLI+ LIQSG+C EALEVY R+VSEG+KPSLKTYSALMVALGK+RD +T
Sbjct: 190  AGFVLNAYSYNGLIYNLIQSGYCREALEVYERVVSEGIKPSLKTYSALMVALGKRRDVKT 249

Query: 243  VMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLID 302
            VM LL EMESLGLRPNVYT+TICIRVLGRAGKIDEAYE F+RMD+EGCGPD+VTYTVLID
Sbjct: 250  VMSLLNEMESLGLRPNVYTFTICIRVLGRAGKIDEAYEXFKRMDDEGCGPDVVTYTVLID 309

Query: 303  ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 362
            ALCNAG+L+ AKELFVKMKA+GHKPDQV YITLLDKF+D  DLDTVKEFW +MEADGY P
Sbjct: 310  ALCNAGKLDKAKELFVKMKASGHKPDQVTYITLLDKFSDGKDLDTVKEFWSEMEADGYAP 369

Query: 363  DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 422
            DVVTFTILV+ LCKA + DEAF   D MRKQG+ PNLHTYNTLI GLL+  R+++ALKL 
Sbjct: 370  DVVTFTILVNALCKAGNVDEAFNMLDTMRKQGVSPNLHTYNTLIGGLLRLCRLDEALKLF 429

Query: 423  DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 482
            ++++ LGV PTAYTY++FIDY+GK GD+GKA+E FEKMK +GIVPNIVACNASLYSLAE 
Sbjct: 430  NSIDCLGVPPTAYTYILFIDYYGKCGDSGKAMEAFEKMKNKGIVPNIVACNASLYSLAEE 489

Query: 483  GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 542
            GRL+EA++++N L+  GL+PDSVTYN+MMKC+SKVGQ+D+A+ LL EM +NGCE DVI+V
Sbjct: 490  GRLQEAQDVYNELKYYGLSPDSVTYNIMMKCFSKVGQIDEAIELLSEMERNGCEADVIIV 549

Query: 543  NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 602
            NSLID LYKA RVDEAW+MF RMK+MKL+PTVVTYNTLL+ LGK+G VQKAIE+FE+M +
Sbjct: 550  NSLIDMLYKADRVDEAWQMFYRMKEMKLTPTVVTYNTLLAALGKDGEVQKAIEMFENMAE 609

Query: 603  QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 662
            Q C PNTI+FNTLL+C CKNDE+ LAL+MF KMT M C PDVLTYNT+IYGLI+ENR++Y
Sbjct: 610  QGCPPNTITFNTLLNCLCKNDEVTLALKMFCKMTTMSCSPDVLTYNTIIYGLIRENRIDY 669

Query: 663  AFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMG 722
            AFWFFHQ+KKS+ PDH+T+CTLLP +VK GRI D  KIA++F+ QV  R +R FWEDLMG
Sbjct: 670  AFWFFHQMKKSLXPDHITLCTLLPRVVKDGRIEDGFKIAENFVYQVGVRADRPFWEDLMG 729

Query: 723  GTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIK 782
            G L+EAEID+AI+FAE L+ + ICR+DS LIPL+RVLC Q++A  A+++FE FT  L IK
Sbjct: 730  GILIEAEIDRAILFAERLISDRICRDDSVLIPLLRVLCTQRKAFDAHKVFEKFTKXLGIK 789

Query: 783  PTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFEL 842
            PT+ + N LI  LL+ H  E+AWDLF++MKN  C PD FTYN+LLD HGK G I ELFEL
Sbjct: 790  PTLEACNYLIEWLLKDHAAERAWDLFKEMKNGGCTPDVFTYNLLLDAHGKSGNITELFEL 849

Query: 843  YNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAK 902
            Y EM+ R CKPN +T+NIVISSL KS+++D A+D YYDLVS DF P+PCTYGPL+DGL K
Sbjct: 850  YEEMIFRGCKPNTVTHNIVISSLVKSDSVDXAIDLYYDLVSGDFSPSPCTYGPLIDGLFK 909

Query: 903  AGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKS 962
            +GRL+EAM  F+EM DYGCKPN AIFNILING+ KTGD E A  LF+RM+KEGIRPDLKS
Sbjct: 910  SGRLDEAMHFFDEMADYGCKPNSAIFNILINGFAKTGDAEAACDLFRRMIKEGIRPDLKS 969

Query: 963  YTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMR 1022
            YTILV+CLC AGRVD+A+ YFEELK +GLDPD ++YN +INGLG+S+R+EEAL+LY EMR
Sbjct: 970  YTILVDCLCQAGRVDDAVDYFEELKQSGLDPDSVSYNLMINGLGRSRRVEEALSLYDEMR 1029

Query: 1023 ERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPE 1082
             RGI PDL+TYN+++L LGL GMVE+A R+YEELQL GLEPDVFTYNALIR YS SG+P+
Sbjct: 1030 TRGIAPDLYTYNSLILNLGLVGMVEQARRIYEELQLVGLEPDVFTYNALIRLYSTSGDPD 1089

Query: 1083 HAYTVYKNMMVDGCNPNDGTYAQLPN 1103
            HAY VYKNMMV GC+PN GT+AQLPN
Sbjct: 1090 HAYAVYKNMMVGGCSPNVGTFAQLPN 1108

BLAST of Cp4.1LG06g02870 vs. NCBI nr
Match: gi|645227745|ref|XP_008220663.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Prunus mume])

HSP 1 Score: 1562.7 bits (4045), Expect = 0.0e+00
Identity = 756/1106 (68.35%), Postives = 917/1106 (82.91%), Query Frame = 1

Query: 3    STCCNG-----AFSNCQIYASSCSGSSRGLISENLGDFRT-ATLSMANWKKHRKKRKNVC 62
            S CC+      AF++ +I+A S +GS   L   N G  +     S+ N  K RKKR    
Sbjct: 10   SMCCSSINYSLAFTDNRIFAISHTGS---LKERNCGKLKAWPCRSLVNLTKKRKKRMGFG 69

Query: 63   RFALQNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETC 122
             F +++ +E  VA K+K KI VS EE++R LKS+ D   A S+F S  + P V HTTETC
Sbjct: 70   GFVIKSSQEVVVA-KKKPKISVSSEEVVRVLKSIADPKSAFSFFKSFAELPSVVHTTETC 129

Query: 123  NFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 182
            N++LE LRVH +VEDMA VF+ MQK+II+R+L TYLTIFK L IRGG+RQ   AL++MRK
Sbjct: 130  NYMLEILRVHRRVEDMAYVFDVMQKQIIKRNLDTYLTIFKGLDIRGGIRQAPSALEEMRK 189

Query: 183  AGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSET 242
            +GF+LNAYSYNGLI+ LIQSG+C EALEVY R+VSEG+KPSLKTYSALMV+LGK+RD +T
Sbjct: 190  SGFILNAYSYNGLIYNLIQSGYCREALEVYERVVSEGIKPSLKTYSALMVSLGKRRDVKT 249

Query: 243  VMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLID 302
            VM LLKEMESLGLRPNVYT+TICIR LGRAGKIDEAYEIF+RMDEEGCGPD++TYTVLID
Sbjct: 250  VMGLLKEMESLGLRPNVYTFTICIRALGRAGKIDEAYEIFKRMDEEGCGPDVITYTVLID 309

Query: 303  ALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYMP 362
            ALC AG+L++AKELF KMK++GHKPDQV YITLLDKF+D  DLD VKEFW +MEADGY P
Sbjct: 310  ALCTAGKLDNAKELFAKMKSSGHKPDQVTYITLLDKFSDGKDLDAVKEFWREMEADGYAP 369

Query: 363  DVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLL 422
            +VVTFTILV+ LCKA + DEAF+  D+MRKQG+ PNLHTYNTL+CGLL+  R+++AL L 
Sbjct: 370  EVVTFTILVNALCKAGNVDEAFSMLDIMRKQGVSPNLHTYNTLLCGLLRLCRLDEALNLF 429

Query: 423  DTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAES 482
            ++ME LGV PTAYTY++FIDY+GK G +GKA+E FEKMKARGIVPNIVACNASLYSLAE 
Sbjct: 430  NSMECLGVPPTAYTYILFIDYYGKCGKSGKAIEAFEKMKARGIVPNIVACNASLYSLAEE 489

Query: 483  GRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVV 542
            GRL+EA++++N L+ +GL+PDSVTYNMMMKCYSKVGQ+D+A+ LL EM +NGCE DVI+V
Sbjct: 490  GRLQEAQHVYNELKYSGLSPDSVTYNMMMKCYSKVGQLDEAIKLLSEMERNGCEADVIIV 549

Query: 543  NSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIK 602
            NSLID LYKA RVDEAW+MF RMK+MKL+PTVVTYNT       EG+VQKAIE+FE+M +
Sbjct: 550  NSLIDILYKADRVDEAWQMFYRMKEMKLTPTVVTYNTXXXXXXXEGQVQKAIEMFENMTE 609

Query: 603  QRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNY 662
            Q C PNTI+FNTLL+C CKNDE+ LAL+M  KMT M+C+PDVLTYNTVIYGLI+E+R++Y
Sbjct: 610  QGCPPNTITFNTLLNCLCKNDEVTLALKMLCKMTTMNCRPDVLTYNTVIYGLIRESRIDY 669

Query: 663  AFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMG 722
            AFWFFHQ+KKS++PDH+T+CTLLPG+VK GR+ DA+KIA+DF+ QV  + +R FWEDLMG
Sbjct: 670  AFWFFHQMKKSLFPDHITVCTLLPGVVKDGRVEDALKIAEDFMYQVGVKADRPFWEDLMG 729

Query: 723  GTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIK 782
            G L+EAEID  ++FAE L+ + ICR+DS LIPL+R LC +++A  A+ IFE FT  L IK
Sbjct: 730  GILIEAEIDIVVLFAERLISDRICRDDSVLIPLLRFLCTRRKAFDAHHIFEKFTKTLGIK 789

Query: 783  PTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFEL 842
            PT+ +YNCLI  LL+ H TE+A DLF +MKN+ CAPD FTYN+LLD +GK G I ELFEL
Sbjct: 790  PTLEAYNCLIEWLLKDHVTERALDLFVEMKNSGCAPDVFTYNLLLDAYGKSGNITELFEL 849

Query: 843  YNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAK 902
            Y EM  R CKPN IT+NIVISSL KS+++++A+D YYDLVS DF P+PCTYGPL+DGL K
Sbjct: 850  YEEMNCRGCKPNTITHNIVISSLVKSDSIERAIDLYYDLVSGDFSPSPCTYGPLIDGLFK 909

Query: 903  AGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKS 962
            +GRLEEAM  FEEM DYGCKPN AIFNILING+ KTGD+E A +LFKRM +EGIRPDLKS
Sbjct: 910  SGRLEEAMHFFEEMADYGCKPNSAIFNILINGFAKTGDVEAACELFKRMTREGIRPDLKS 969

Query: 963  YTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMR 1022
            YTILV+CLC AGRVD+AL YFEE+K +GLDPD ++YN +INGLG+S+R+EEAL++Y EMR
Sbjct: 970  YTILVDCLCQAGRVDDALQYFEEIKQSGLDPDSVSYNLMINGLGRSRRVEEALSVYDEMR 1029

Query: 1023 ERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPE 1082
             RGI PDL TYN+++L LGL GMVE+A R+YEELQL GLEPDVFTYNALIR YS SGNP+
Sbjct: 1030 TRGIAPDLFTYNSLILNLGLVGMVEQAGRIYEELQLVGLEPDVFTYNALIRLYSTSGNPD 1089

Query: 1083 HAYTVYKNMMVDGCNPNDGTYAQLPN 1103
            HAY VYKNMMV GC+PN GT+AQLPN
Sbjct: 1090 HAYAVYKNMMVGGCSPNVGTFAQLPN 1111

BLAST of Cp4.1LG06g02870 vs. NCBI nr
Match: gi|694356830|ref|XP_009359106.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 1557.7 bits (4032), Expect = 0.0e+00
Identity = 755/1107 (68.20%), Postives = 909/1107 (82.11%), Query Frame = 1

Query: 3    STCCNG-----AFSNCQIYASSCSGSSRGLISENLGDFRT-ATLSMANWKKHRKKRKNVC 62
            S CC+      +F++ +I+A S  GS   L + N G        S++N  K RKK    C
Sbjct: 10   SMCCSSVNYSFSFTDNRIFAISHFGS---LKARNFGKLNVWGCGSLSNLTKKRKKGMGFC 69

Query: 63   RFALQNPEEATVAV-KEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTET 122
             F ++  EE  V V K+  KI VS EE++R LKS++D   AL+ F S  + P V HTTET
Sbjct: 70   GFVMKRSEEEEVVVGKKNPKISVSSEEVMRVLKSVSDPKSALALFKSFAELPSVVHTTET 129

Query: 123  CNFVLEFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMR 182
            CN++LE L V  +VEDMA VF+ MQK+II R L TYLTIFK L +RGG+RQ   AL+ MR
Sbjct: 130  CNYMLEVLGVDRRVEDMAYVFDLMQKQIINRSLDTYLTIFKGLDVRGGIRQAPFALEVMR 189

Query: 183  KAGFVLNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDSE 242
            KAGFVLNAYSYNGLI+ LIQSG+C EALEVY R++SEG+KPSLKTYSALMVALGK+RD +
Sbjct: 190  KAGFVLNAYSYNGLIYNLIQSGYCREALEVYERVISEGIKPSLKTYSALMVALGKRRDVK 249

Query: 243  TVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLI 302
            TVM LL EME LGLRPNVYT+TICIRVLGRAGK DEAYEIF+RMD+EGCGPD+VTYTVLI
Sbjct: 250  TVMSLLNEMEILGLRPNVYTFTICIRVLGRAGKFDEAYEIFKRMDDEGCGPDVVTYTVLI 309

Query: 303  DALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWGQMEADGYM 362
            DALCNAG+L+ AKELFVKMKA+GHKPDQV YITLLDKF+D  DL TVKEFW +MEADGY 
Sbjct: 310  DALCNAGKLDKAKELFVKMKASGHKPDQVTYITLLDKFSDGKDLGTVKEFWSEMEADGYA 369

Query: 363  PDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKL 422
            PDVVTFTILV+ LCKA + DEAF   D MRKQG+ PNLHTYNTLI GLL+  R+++ALKL
Sbjct: 370  PDVVTFTILVNALCKAGNVDEAFNMLDTMRKQGVSPNLHTYNTLIGGLLQLCRLDEALKL 429

Query: 423  LDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAE 482
             ++++ LGV PTAYTY++FIDY+GK GD+GKA+E FEKMK +GIVPNIVACNASLYSLAE
Sbjct: 430  FNSIDCLGVPPTAYTYILFIDYYGKCGDSGKAMEAFEKMKNKGIVPNIVACNASLYSLAE 489

Query: 483  SGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIV 542
             GRL+EA++++N L+  GL+PDSVTYNMMMKCYSKVGQ+D+A+ LL EM +NGCE DVI+
Sbjct: 490  EGRLQEAQDVYNELKYYGLSPDSVTYNMMMKCYSKVGQIDEAIELLLEMERNGCEADVII 549

Query: 543  VNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI 602
            VNSLID LYKA RVDEAW+MF RMK+MKL+PTVVTYNTLL+ LGK+G ++KAIE+FE+M 
Sbjct: 550  VNSLIDMLYKADRVDEAWQMFYRMKEMKLTPTVVTYNTLLAALGKDGEIEKAIEMFENMA 609

Query: 603  KQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVN 662
            +Q C PNTI+FNTLL+C CKNDE+ LAL+MF KMT M C PDVLTYNT++YGLI+ENR++
Sbjct: 610  EQGCPPNTITFNTLLNCLCKNDEVTLALKMFCKMTTMSCSPDVLTYNTILYGLIRENRID 669

Query: 663  YAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLM 722
            YAFWFFHQ+KK + PDH+T+CTLLPG+VK GRI DA KIA++F+ QV  R +R FWEDLM
Sbjct: 670  YAFWFFHQMKKLLLPDHITLCTLLPGVVKDGRIEDAFKIAENFMYQVGVRADRPFWEDLM 729

Query: 723  GGTLVEAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEI 782
            GG L+EAEID+AI+FAE L+ + ICR+DS LIPL+RVLC Q++A  A+++FE FT  L I
Sbjct: 730  GGILIEAEIDRAILFAERLISDRICRDDSVLIPLLRVLCTQRKAFDAHKVFEKFTKTLGI 789

Query: 783  KPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKLGKIAELFE 842
            KPT+ +YN LI  LL+ H  E+AWDLF++MKN  C PD FTYN+ LD HGK G I ELFE
Sbjct: 790  KPTLEAYNYLIEWLLKDHAAERAWDLFKEMKNGGCTPDVFTYNLFLDAHGKSGNITELFE 849

Query: 843  LYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLA 902
            LY EM+ R CKPN +T+NIVISSL KS+++D A+D YYDLVS DF P+PCTYGPL+DGL 
Sbjct: 850  LYEEMIFRGCKPNTVTHNIVISSLVKSDSVDGAIDLYYDLVSGDFSPSPCTYGPLIDGLF 909

Query: 903  KAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLK 962
            K+GRL+EAM  F+EM DYGCKPN AIFNILING+ KTGD+E A  LF+RM+KEGIRPDLK
Sbjct: 910  KSGRLDEAMHFFDEMADYGCKPNSAIFNILINGFAKTGDVEAACNLFRRMIKEGIRPDLK 969

Query: 963  SYTILVECLCLAGRVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEM 1022
            SYTILV+CLC AGRVD+A+ YFEELK +GLDPD ++YN +INGLG+S+R+EEAL +Y EM
Sbjct: 970  SYTILVDCLCQAGRVDDAVDYFEELKQSGLDPDSVSYNLMINGLGRSRRVEEALTVYDEM 1029

Query: 1023 RERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNP 1082
            R RGI PDL+TYN ++L LGL GMVE+A R+YEELQL GLEPDVFTYNALIR YS SG+P
Sbjct: 1030 RTRGITPDLYTYNLLILNLGLVGMVEQAGRIYEELQLVGLEPDVFTYNALIRLYSTSGDP 1089

Query: 1083 EHAYTVYKNMMVDGCNPNDGTYAQLPN 1103
            +HAY VYKNMMVDGC+PN GT+AQLPN
Sbjct: 1090 DHAYAVYKNMMVDGCSPNVGTFAQLPN 1113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP344_ARATH0.0e+0063.63Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop... [more]
PP217_ARATH4.3e-9428.51Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN... [more]
PP432_ARATH7.6e-9126.20Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN... [more]
PP437_ARATH1.6e-8526.87Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th... [more]
PP381_ARATH2.6e-8325.97Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
D7SV48_VITVI0.0e+0066.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06690 PE=4 SV=... [more]
A0A061GHJ7_THECC0.0e+0066.88Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_... [more]
W9REB9_9ROSA0.0e+0067.00Uncharacterized protein OS=Morus notabilis GN=L484_013194 PE=4 SV=1[more]
B9HB63_POPTR0.0e+0065.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28060g PE=4 SV=2[more]
A0A0D2QA82_GOSRA0.0e+0065.02Uncharacterized protein OS=Gossypium raimondii GN=B456_009G063400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31850.10.0e+0063.63 proton gradient regulation 3[more]
AT3G06920.12.4e-9528.51 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G55840.14.3e-9226.20 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G59900.19.2e-8726.87 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G14770.11.5e-8425.97 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659104199|ref|XP_008452843.1|0.0e+0088.22PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic ... [more]
gi|778696900|ref|XP_004145582.2|0.0e+0087.86PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|657971683|ref|XP_008377633.1|0.0e+0068.44PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|645227745|ref|XP_008220663.1|0.0e+0068.35PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic ... [more]
gi|694356830|ref|XP_009359106.1|0.0e+0068.20PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0009451 RNA modification
biological_process GO:0007049 cell cycle
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0000272 polysaccharide catabolic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0016043 cellular component organization
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0019637 organophosphate metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0005976 polysaccharide metabolic process
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0008150 biological_process
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02870.1Cp4.1LG06g02870.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 781..807
score: 0.43coord: 536..562
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 352..385
score: 2.2E-10coord: 880..910
score: 4.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 987..1031
score: 5.5E-13coord: 812..861
score: 8.3E-16coord: 1057..1097
score: 6.5E-10coord: 636..682
score: 1.4E-7coord: 391..438
score: 1.0E-14coord: 566..615
score: 8.4E-18coord: 917..965
score: 1.4E-13coord: 496..533
score: 4.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 240..298
score: 2.3E-13coord: 171..230
score: 5.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 569..603
score: 7.9E-12coord: 956..988
score: 5.0E-8coord: 289..322
score: 3.9E-10coord: 465..498
score: 0.0027coord: 1025..1059
score: 9.5E-7coord: 184..217
score: 7.6E-6coord: 499..533
score: 1.4E-11coord: 604..638
score: 5.7E-10coord: 254..287
score: 1.1E-9coord: 885..919
score: 2.8E-10coord: 850..883
score: 1.3E-7coord: 1060..1093
score: 3.4E-9coord: 220..253
score: 5.0E-5coord: 921..953
score: 1.9E-9coord: 359..392
score: 8.6E-9coord: 429..463
score: 3.9E-8coord: 535..567
score: 1.3E-8coord: 815..849
score: 5.3E-9coord: 991..1023
score: 4.5E-10coord: 781..814
score: 1.4E-4coord: 394..427
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 637..667
score: 8.846coord: 1023..1057
score: 11.356coord: 567..601
score: 13.329coord: 813..847
score: 11.992coord: 532..566
score: 12.496coord: 217..251
score: 10.084coord: 602..636
score: 12.375coord: 848..882
score: 11.016coord: 497..531
score: 13.998coord: 1058..1092
score: 12.627coord: 322..356
score: 9.131coord: 427..461
score: 11.224coord: 287..321
score: 13.68coord: 252..286
score: 12.847coord: 918..952
score: 12.902coord: 357..391
score: 12.704coord: 392..426
score: 13.307coord: 462..496
score: 10.03coord: 883..917
score: 13.395coord: 112..146
score: 5.875coord: 182..216
score: 11.663coord: 778..812
score: 9.46coord: 988..1022
score: 13.165coord: 671..701
score: 6.062coord: 147..181
score: 7.333coord: 953..987
score: 11
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 182..324
score: 5.2E-4coord: 394..453
score: 5.2E-4coord: 812..901
score: 1.1E-12coord: 902..1084
score: 5.9E-10coord: 499..633
score: 1.1
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 843..1099
score: 3.2E-296coord: 243..422
score: 3.2E-296coord: 493..666
score: 3.2E
NoneNo IPR availablePANTHERPTHR24015:SF612SUBFAMILY NOT NAMEDcoord: 843..1099
score: 3.2E-296coord: 243..422
score: 3.2E-296coord: 493..666
score: 3.2E
NoneNo IPR availableunknownSSF81901HCP-likecoord: 891..1084
score: 1.99E-13coord: 496..642
score: 3.92E-11coord: 370..457
score: 3.92E-11coord: 766..947
score: 1.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g02870Cp4.1LG18g05820Cucurbita pepo (Zucchini)cpecpeB370
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g02870Wax gourdcpewgoB0980
Cp4.1LG06g02870Wax gourdcpewgoB1005
Cp4.1LG06g02870Cucurbita pepo (Zucchini)cpecpeB134
Cp4.1LG06g02870Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g02870Cucurbita pepo (Zucchini)cpecpeB498
Cp4.1LG06g02870Cucurbita pepo (Zucchini)cpecpeB513
Cp4.1LG06g02870Cucumber (Gy14) v1cgycpeB0442
Cp4.1LG06g02870Cucurbita maxima (Rimu)cmacpeB100
Cp4.1LG06g02870Cucurbita maxima (Rimu)cmacpeB202
Cp4.1LG06g02870Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g02870Cucurbita maxima (Rimu)cmacpeB785
Cp4.1LG06g02870Cucurbita moschata (Rifu)cmocpeB467
Cp4.1LG06g02870Cucurbita moschata (Rifu)cmocpeB136
Cp4.1LG06g02870Cucurbita moschata (Rifu)cmocpeB173
Cp4.1LG06g02870Cucurbita moschata (Rifu)cmocpeB738
Cp4.1LG06g02870Wild cucumber (PI 183967)cpecpiB774
Cp4.1LG06g02870Cucumber (Chinese Long) v2cpecuB772
Cp4.1LG06g02870Bottle gourd (USVL1VR-Ls)cpelsiB651
Cp4.1LG06g02870Watermelon (Charleston Gray)cpewcgB713
Cp4.1LG06g02870Watermelon (97103) v1cpewmB760
Cp4.1LG06g02870Melon (DHL92) v3.5.1cpemeB718
Cp4.1LG06g02870Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g02870Cucumber (Gy14) v2cgybcpeB141
Cp4.1LG06g02870Cucumber (Gy14) v2cgybcpeB256
Cp4.1LG06g02870Melon (DHL92) v3.6.1cpemedB853
Cp4.1LG06g02870Silver-seed gourdcarcpeB0204
Cp4.1LG06g02870Silver-seed gourdcarcpeB0719
Cp4.1LG06g02870Silver-seed gourdcarcpeB1083
Cp4.1LG06g02870Silver-seed gourdcarcpeB1367
Cp4.1LG06g02870Cucumber (Chinese Long) v3cpecucB0954
Cp4.1LG06g02870Cucumber (Chinese Long) v3cpecucB0958