Cp4.1LG06g02720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g02720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 1460960 .. 1463600 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCAAAAGGCCGAGTAGTAAAGGCCCATTTGAGACATGGGCCTCAACTCTTCACTACGGCCTGCTTGAATTGAATTCAATAGTGACGTCACTCCTAGGAATATTGCCCTTTGCCTTTAAATTTCTTCCACATTTGGTCCCATAAAAACATTATAGTTTTATTATATATAAATGATAAAATGTTAATACTGGATGATGAAACTCCCACCTCCGCTAATTTAAGGAAATGATCATGAGTTTATAAACAAATAATACTATCTTCATTAGTATAAGGCCTTTTGGGAAAGTCCAAAGCAAAGACATGAGAGGTTATACTCAAAGTGGACAATATCATATCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGTCATGCCCTGAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAACCCTATCCATAATTTTAAAACGTGTCTATTATGGAGAGGGTTAACCCTACTCTGACTAGTATCTTGCACCGTCTGATGACTGATTCTAATACCATTTGTAAACCTACTGTTAGTAGACATTGTTCGTTTTAGCCCATTACGTATTGTTGTCTGACTTTCGTTTTAAAAAACATCTCTAGAGAGAAATTTTCACACGCTTATAAAGAATGTTTCATTTCCCTCTCCAACCAAAAAATAATTTTACAATTCACTCTCTTATGAACCTAACGTTCTCGTTGGTGCACTGGCCCGCACATAAATCCTAAATCCTAAACTCTACGCCCTAAATCACATAGAGTATGCTTTTGATTTTTAAAGTTTAGGGCGATTTTTTGTTTTAATTTTGAAATTGTGGGATAAAAAAACAGAAATGTCCTGAAAATTGAAAGGGTCAAACTTATAATAATGGGGTCCGGGTCCCGTCTTAGTTGGACTTAAATTTTGATCGCCGCAACGCAAAATAGCTGCGCGGCTTGGTCGTCGCTGCCATTTTCATATTTGGACTGTTGACACTCCAAATTAAGCACGAGTTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTACACTTCACCACCTCTTCTCTTTTAATAATATTACAACAACCATTTCCACGTCATCCATTACCCTTCTTCCTTTTTCAGAACCGTCACGCCTTTTCTTCATTTTTGGCACCGTCAAAGTCCAAAGTCCTTCATCAAATTGACATATATATATATACATAATAGAATAAAATAGAATAATTTGAAATTTATTGTCGACATGTCAATAAATATATATATATATAATTTAATTTAATAGAATAATTTGAAATTTTGTTCGACCTGTCACTATATTCATTACTATTTTTCGTAAACGAGTATTAAACATTAATTTTAGAAATTAATTAATATTTTTTATATATTTTTTAAACATTGTAGCACACGAAGATTATTTAATACAAATAGATATAGTTGTTCACTTCTATTTAAAAATATATATAAATAAGAGATTTAAATTAAGCTACCAAAAACTAAAATAAACGAAAAAATCAATGAAAAAACGAGTATTTTAGAGTTGATTTTACCTATTGAAATAGCGGTTTATTTATTCTGTAACTTTATATTTTTAAGGTTATAGTTGACTCTCAGTAAATATATATAAAAATAAAGAGTAATATAAATATACGTATTGATTTAATCAGAAAATAAAAATAATTTATTATTAATTTTAAAACTTTTTTTAATCAGATAAATATGGATGGATAACGATATTTCAGAATATTAATATTTATTTTATTTATTTTATTGACATAATAATTTAAATAAAAACAAATAAATTGAAAACATTTAATATAATGGTTATTTTTAAAACTCACGTGGTAATTTAAATCATTGTTCCGCGTTTCTGTTTACGCCATTGTCGTCTTCTTCCTTGAGCTCTCTCTCTACTCAAAATCTACTCGTTTTGTCCATTTCCTATTTAAACTCCAAAATCCTCTCCCCTTTTTAACTATCTTCAAATTGCCCTTACCTAGCTACCGAACCTGAACTCGAACCCGAACCTGTCTTAGGCTCGGATTGGGTAATGGAGGACCGTCGTAGCTCGGGCAATGAAACGGACGACAAGTCGGATCAGAATCTAAAGTACAAAGGCGTTAGAAAGAGAAAATGGGGGAAATGGGTGTCAGAAATTCGGCTACCCAATAGCCGTGACCGAATTTGGTTGGGTTCTTATGACAAACCCGAACAGGCGGCGCGTGCTTTCGACGCGGCTCAGTTCTGTCTGCGTGGTCCCCGCGCGAAGTTTAATTTTCCTGACAGTCCACCGGAGATTGAAGGTGGGGACCGACTTACGGCTCAGGAGATTCAGGCCGCGGCTGCCAAGTTTGCGGGCGAGCACGGTGGAGACGAAGGAGGTGATGGGTATTGTAATGATGAAGCTGTGGCGGGGGAATATTCTTGTGGGGCGGTTGATGGCGGAGATGGGGGCGGCGGTTGGCCGGTTTGGGACTTGTTGGACGGTGGTTCGGGATTGGGGTTTGATAATATTATGGGTGGGAACGCAATGATTTGTGATGAAGATATTAGTTTTGGGGTGGAAGAACATATGGAGGAGGATGAGTTTGGTGATGGTGGAGGCTATTTTTATCACGAGCCTAATTTCCTATGGAACTTTGATGATCATTAA

mRNA sequence

ATGTTCGCAAAAGGCCGAGCCGCGGCTGCCAAGTTTGCGGGCGAGCACGGTGGAGACGAAGGAGGTGATGGGTATTGTAATGATGAAGCTGTGGCGGGGGAATATTCTTGTGGGGCGGTTGATGGCGGAGATGGGGGCGGCGGTTGGCCGGTTTGGGACTTGTTGGACGGTGGTTCGGGATTGGGGTTTGATAATATTATGGGTGGGAACGCAATGATTTGTGATGAAGATATTAGTTTTGGGGTGGAAGAACATATGGAGGAGGATGAGTTTGGTGATGGTGGAGGCTATTTTTATCACGAGCCTAATTTCCTATGGAACTTTGATGATCATTAA

Coding sequence (CDS)

ATGTTCGCAAAAGGCCGAGCCGCGGCTGCCAAGTTTGCGGGCGAGCACGGTGGAGACGAAGGAGGTGATGGGTATTGTAATGATGAAGCTGTGGCGGGGGAATATTCTTGTGGGGCGGTTGATGGCGGAGATGGGGGCGGCGGTTGGCCGGTTTGGGACTTGTTGGACGGTGGTTCGGGATTGGGGTTTGATAATATTATGGGTGGGAACGCAATGATTTGTGATGAAGATATTAGTTTTGGGGTGGAAGAACATATGGAGGAGGATGAGTTTGGTGATGGTGGAGGCTATTTTTATCACGAGCCTAATTTCCTATGGAACTTTGATGATCATTAA

Protein sequence

MFAKGRAAAAKFAGEHGGDEGGDGYCNDEAVAGEYSCGAVDGGDGGGGWPVWDLLDGGSGLGFDNIMGGNAMICDEDISFGVEEHMEEDEFGDGGGYFYHEPNFLWNFDDH
Homology
[Close]
BLAST of Cp4.1LG06g02720 vs. TrEMBL
Match: A0A0A0L462_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G649620 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1 

Query: 6   RAAAAKFAGEHGGDEGGDGYCNDEAVAGEYSCGAVDGGDGGGGWPV-WDL-LDGGSGLGF 65
           +AAAAK+A EHG +  G+   +DE V  E          GGG WP  WD+ +DGG   GF
Sbjct: 94  QAAAAKYAEEHGEEGVGN---HDEGVTVE----------GGGVWPDNWDMTMDGGWEFGF 153

Query: 66  DNIMGGNAMICDEDISFGVE-EHMEEDEF-GDGGGYFYHEPNFLWNFDDH 112
               GGNAMI   DISFGV+ E+ME+++F  +GG +F HEPNFLWNFD+H
Sbjct: 154 ----GGNAMIYGGDISFGVQDENMEKEDFDNNGGNHFCHEPNFLWNFDNH 186

[Close]
BLAST of Cp4.1LG06g02720 vs. NCBI nr
Match: gi|659104078|ref|XP_008452799.1| (PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 58/109 (53.21%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 6   RAAAAKFAGEHGGDEGGDGYCNDEAVAGEYSCGAVDGGDGGGGWPVWDL-LDGGSGLGFD 65
           +AAAAK+A EHG  E G G  +DEA+            +GGG WP WD+ +DGG   GF 
Sbjct: 99  QAAAAKYAEEHG--EEGVGNDHDEALVTV---------EGGGVWPDWDMTMDGGWEFGF- 158

Query: 66  NIMGGNAMICDEDISFGVEEHMEEDEFGD--GGGYFYHEPNFLWNFDDH 112
              GGNAMI D +ISF V+E+MEE E  D  GG +F HEPNFLWNFD+H
Sbjct: 159 ---GGNAMIYDGNISFEVQENMEEKEDFDNNGGDHFCHEPNFLWNFDNH 192

[Close]
BLAST of Cp4.1LG06g02720 vs. NCBI nr
Match: gi|449447367|ref|XP_004141440.1| (PREDICTED: ethylene-responsive transcription factor ERF017 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1 

Query: 6   RAAAAKFAGEHGGDEGGDGYCNDEAVAGEYSCGAVDGGDGGGGWPV-WDL-LDGGSGLGF 65
           +AAAAK+A EHG +  G+   +DE V  E          GGG WP  WD+ +DGG   GF
Sbjct: 94  QAAAAKYAEEHGEEGVGN---HDEGVTVE----------GGGVWPDNWDMTMDGGWEFGF 153

Query: 66  DNIMGGNAMICDEDISFGVE-EHMEEDEF-GDGGGYFYHEPNFLWNFDDH 112
               GGNAMI   DISFGV+ E+ME+++F  +GG +F HEPNFLWNFD+H
Sbjct: 154 ----GGNAMIYGGDISFGVQDENMEKEDFDNNGGNHFCHEPNFLWNFDNH 186

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g02720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L462_CUCSA1.2e-1150.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G649620 PE=4 SV=1[more]
BLAST of Cp4.1LG06g02720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659104078|ref|XP_008452799.1|1.9e-1353.21PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis melo][more]
gi|449447367|ref|XP_004141440.1|1.7e-1150.91PREDICTED: ethylene-responsive transcription factor ERF017 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02720.1Cp4.1LG06g02720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g02720CmaCh09G003780Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g02720CmoCh09G003800Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g02720Lsi04G013720Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g02720Carg02807Silver-seed gourdcarcpeB0906
Cp4.1LG06g02720Carg10731Silver-seed gourdcarcpeB1083
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g02720Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g02720Wax gourdcpewgoB0997
Cp4.1LG06g02720Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g02720Cucumber (Gy14) v1cgycpeB0711
Cp4.1LG06g02720Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g02720Cucurbita moschata (Rifu)cmocpeB467
Cp4.1LG06g02720Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g02720Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g02720Watermelon (Charleston Gray)cpewcgB701
Cp4.1LG06g02720Watermelon (97103) v1cpewmB766
Cp4.1LG06g02720Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g02720Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g02720Melon (DHL92) v3.6.1cpemedB867