Cp4.1LG06g01170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb family transcription factor family protein
LocationCp4.1LG06 : 550395 .. 550658 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAAAGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACCGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAACCCGGACCCGCAGGCCGAGGATTTCGCTTTGTTGACGACGAATAA

mRNA sequence

ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAAAGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACCGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAACCCGGACCCGCAGGCCGAGGATTTCGCTTTGTTGACGACGAATAA

Coding sequence (CDS)

ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAAAGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACCGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAACCCGGACCCGCAGGCCGAGGATTTCGCTTTGTTGACGACGAATAA

Protein sequence

MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFVDDE
Homology
[Close]
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.7e-23
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 1  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60
          M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N 
Sbjct: 6  MSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINS 65

Query: 61 IETGQVPFPNYRKPGPAGRG 81
          IE G VPFPNYR  G    G
Sbjct: 66 IENGHVPFPNYRTSGGCTNG 85

[Close]
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 7  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQV 66
          S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 67 PFPNYR 73
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-21
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 2  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRI 61
          +M S S+WT++QNK FE ALA+YDK+TP RW  +AKAVGSK+AEEVKRHYD LVED+  I
Sbjct: 5  SMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNI 64

Query: 62 ETGQVPFPNYRKPGPAGRGFRFVDD 87
          E   VP P Y K    G   R +DD
Sbjct: 65 EQDLVPLPKY-KTVDVGSKSRGIDD 88

[Close]
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-21
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 4  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIET 63
          GSG  W+A++NKAFE ALA+YDK+TP RW  +A+AV  +T EEVK+HY+ LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 64 GQVPFPNYRKPG 76
          G+VPFPNYR  G
Sbjct: 66 GKVPFPNYRTTG 77

[Close]
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-21
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 4  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIET 63
          GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE 
Sbjct: 10 GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 64 GQVPFPNYR-KPGPAGRGFRFVDDE 88
          G VPFP+Y+   G + RG R  D+E
Sbjct: 70 GHVPFPDYKTTTGNSNRG-RLRDEE 92

[Close]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match: A0A0A0LGK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-32
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 

Query: 3  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIE 62
          MGSGSNWTA+QNK FENALAIYDK+TP RW  LA+AVG KTAEEVKRHY+RLVEDVN+IE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 63 TGQVPFPNYRKPGPAGRGFRFVDDE 88
          TGQVPFPNYR+  PA RGF F+D E
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQE 85

[Close]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match: A0A067KU42_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04433 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.0e-27
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 1 

Query: 1  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60
          MA  SGS+WT +QNK FENALAIYD++TP RWH LA+AVG KT EEVKRHY+ LVEDV +
Sbjct: 1  MASASGSSWTPKQNKLFENALAIYDRDTPDRWHNLARAVGGKTVEEVKRHYELLVEDVRQ 60

Query: 61 IETGQVPFPNYRKPGPAGRGFRFVDDE 88
          IE GQVP PNYRK G   + + F+D+E
Sbjct: 61 IEAGQVPLPNYRKAGLTAKPYSFMDEE 87

[Close]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match: E0CQD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-25
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 3  MGSGSN-WTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRI 62
          MGS SN WT +QNK FENAL +YDK+TP RW  +A+AVG KT EEVKRHY+ LVEDV  I
Sbjct: 1  MGSSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHI 60

Query: 63 ETGQVPFPNYRKPGPAGRGFRFVDDE 88
          E+GQVP PNYRK G + +G+ F D+E
Sbjct: 61 ESGQVPLPNYRKAGASNKGYSFNDEE 86

[Close]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match: W9RQB4_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_009009 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 5  SGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETG 64
          + S WTA+QNK FENALAIYDK++P RWH LA+AVG KT EEVKRHY+ LVEDVN+IE G
Sbjct: 2  ASSTWTAKQNKLFENALAIYDKDSPDRWHNLARAVGGKTVEEVKRHYEMLVEDVNKIEAG 61

Query: 65 QVPFPNYRKPGPAGRGFR-FVDDE 88
          +VP PNYRK G   + +  F+D+E
Sbjct: 62 EVPLPNYRKIGANNKAYNSFMDEE 85

[Close]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match: A0A061FCL0_THECC (DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_034046 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 3  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIE 62
          M SGS WT +QNK FENALAIYDK+TP RWH LA+AVG KT EEVK HY+ LVED+ +IE
Sbjct: 1  MASGSTWTPKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKMHYENLVEDIKQIE 60

Query: 63 TGQVPFPNYRKPGPAGRGFRFVDDE 88
          +GQVP P Y+K G   +G+ ++D+E
Sbjct: 61 SGQVPLPPYKKAG-GSKGYSYMDEE 84

[Close]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 107.5 bits (267), Expect = 4.3e-24
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 1  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60
          M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N 
Sbjct: 6  MSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINS 65

Query: 61 IETGQVPFPNYRKPGPAGRG 81
          IE G VPFPNYR  G    G
Sbjct: 66 IENGHVPFPNYRTSGGCTNG 85

[Close]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-23
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 7  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQV 66
          S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 67 PFPNYR 73
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-22
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 2  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRI 61
          +M S S+WT++QNK FE ALA+YDK+TP RW  +AKAVGSK+AEEVKRHYD LVED+  I
Sbjct: 5  SMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNI 64

Query: 62 ETGQVPFPNYRKPGPAGRGFRFVDD 87
          E   VP P Y K    G   R +DD
Sbjct: 65 EQDLVPLPKY-KTVDVGSKSRGIDD 88

[Close]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-22
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 4  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIET 63
          GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE 
Sbjct: 10 GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 64 GQVPFPNYR-KPGPAGRGFRFVDDE 88
          G VPFP+Y+   G + RG R  D+E
Sbjct: 70 GHVPFPDYKTTTGNSNRG-RLRDEE 92

[Close]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-18
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 5  SGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETG 64
          S S+WTA+++K FE ALA +DK+TP RW  +A+AVG K+ EEVKRHY+ L+ DVN IE+G
Sbjct: 7  STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESG 66

Query: 65 QVPFPNYR 73
          + P P YR
Sbjct: 67 RYPQPRYR 74

[Close]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match: gi|659131298|ref|XP_008465612.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-34
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1 

Query: 3  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIE 62
          MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 63 TGQVPFPNYRKPGPAGRGFRFVDDE 88
          TGQVPFPNYR+ GPA RGF F+D E
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQE 85

[Close]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match: gi|449460267|ref|XP_004147867.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 

Query: 3  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIE 62
          MGSGSNWTA+QNK FENALAIYDK+TP RW  LA+AVG KTAEEVKRHY+RLVEDVN+IE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 63 TGQVPFPNYRKPGPAGRGFRFVDDE 88
          TGQVPFPNYR+  PA RGF F+D E
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQE 85

[Close]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match: gi|802593389|ref|XP_012071856.1| (PREDICTED: protein RADIALIS-like 3 [Jatropha curcas])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 1 

Query: 1  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNR 60
          MA  SGS+WT +QNK FENALAIYD++TP RWH LA+AVG KT EEVKRHY+ LVEDV +
Sbjct: 1  MASASGSSWTPKQNKLFENALAIYDRDTPDRWHNLARAVGGKTVEEVKRHYELLVEDVRQ 60

Query: 61 IETGQVPFPNYRKPGPAGRGFRFVDDE 88
          IE GQVP PNYRK G   + + F+D+E
Sbjct: 61 IEAGQVPLPNYRKAGLTAKPYSFMDEE 87

[Close]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match: gi|225458277|ref|XP_002282461.1| (PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera])

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-25
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 3  MGSGSN-WTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRI 62
          MGS SN WT +QNK FENAL +YDK+TP RW  +A+AVG KT EEVKRHY+ LVEDV  I
Sbjct: 1  MGSSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHI 60

Query: 63 ETGQVPFPNYRKPGPAGRGFRFVDDE 88
          E+GQVP PNYRK G + +G+ F D+E
Sbjct: 61 ESGQVPLPNYRKAGASNKGYSFNDEE 86

[Close]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match: gi|731429572|ref|XP_010664694.1| (PREDICTED: protein RADIALIS-like 3 isoform X1 [Vitis vinifera])

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-25
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 3  MGSGSN-WTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRI 62
          MGS SN WT +QNK FENAL +YDK+TP RW  +A+AVG KT EEVKRHY+ LVEDV  I
Sbjct: 1  MGSSSNNWTTKQNKLFENALVMYDKDTPDRWQNMARAVGGKTVEEVKRHYEMLVEDVKHI 60

Query: 63 ETGQVPFPNYRKPGPAGRGFRFVDDE 88
          E+GQVP PNYRK G + +G+ F D+E
Sbjct: 61 ESGQVPLPNYRKAGASNKGYSFNDEE 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL1_ARATH7.7e-2361.25Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL6_ARATH1.1e-2171.21Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
RADL5_ARATH4.2e-2160.00Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RAD_ANTMA5.5e-2162.50Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL2_ARATH5.5e-2160.00Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
BLAST of Cp4.1LG06g01170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGK8_CUCSA1.3e-3280.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857030 PE=4 SV=1[more]
A0A067KU42_JATCU8.0e-2766.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04433 PE=4 SV=1[more]
E0CQD3_VITVI4.4e-2565.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12530 PE=4 SV=... [more]
W9RQB4_9ROSA1.7e-2465.48DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_009009 PE=4 SV=1[more]
A0A061FCL0_THECC1.7e-2463.53DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_034046 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.14.3e-2461.25 RAD-like 1[more]
AT1G75250.16.3e-2371.21 RAD-like 6[more]
AT1G19510.12.4e-2260.00 RAD-like 5[more]
AT2G21650.13.1e-2260.00 Homeodomain-like superfamily protein[more]
AT2G18328.12.1e-1858.82 RAD-like 4[more]
BLAST of Cp4.1LG06g01170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131298|ref|XP_008465612.1|2.6e-3482.35PREDICTED: protein RADIALIS-like 3 [Cucumis melo][more]
gi|449460267|ref|XP_004147867.1|1.8e-3280.00PREDICTED: protein RADIALIS-like 3 [Cucumis sativus][more]
gi|802593389|ref|XP_012071856.1|1.1e-2666.67PREDICTED: protein RADIALIS-like 3 [Jatropha curcas][more]
gi|225458277|ref|XP_002282461.1|6.3e-2565.12PREDICTED: protein RADIALIS-like 3 isoform X2 [Vitis vinifera][more]
gi|731429572|ref|XP_010664694.1|6.3e-2565.12PREDICTED: protein RADIALIS-like 3 isoform X1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017884SANT_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01170.1Cp4.1LG06g01170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 5..57
score: 5.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 7..61
score: 2.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 8..62
score: 3.81
IPR017884SANT domainPROFILEPS51293SANTcoord: 4..59
score: 9
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 9..82
score: 2.2
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 9..82
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01170Cucsa.342360Cucumber (Gy14) v1cgycpeB0896
Cp4.1LG06g01170CmaCh09G001570Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01170CmaCh01G019110Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01170CmaCh05G002390Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01170CmoCh09G001560Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01170CmoCh01G019730Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01170CmoCh05G002460Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01170Cla020765Watermelon (97103) v1cpewmB765
Cp4.1LG06g01170Csa3G857030Cucumber (Chinese Long) v2cpecuB779
Cp4.1LG06g01170ClCG05G018950Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01170CSPI03G42730Wild cucumber (PI 183967)cpecpiB781
Cp4.1LG06g01170Lsi04G016660Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01170Carg08723Silver-seed gourdcarcpeB0154
Cp4.1LG06g01170Carg11802Silver-seed gourdcarcpeB0267
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g01170Cp4.1LG11g01910Cucurbita pepo (Zucchini)cpecpeB136
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01170Watermelon (97103) v1cpewmB756
Cp4.1LG06g01170Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01170Melon (DHL92) v3.5.1cpemeB726
Cp4.1LG06g01170Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01170Cucumber (Gy14) v2cgybcpeB438
Cp4.1LG06g01170Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01170Melon (DHL92) v3.6.1cpemedB859
Cp4.1LG06g01170Silver-seed gourdcarcpeB1310
Cp4.1LG06g01170Silver-seed gourdcarcpeB1365
Cp4.1LG06g01170Cucumber (Chinese Long) v3cpecucB0961
Cp4.1LG06g01170Cucumber (Chinese Long) v3cpecucB0966
Cp4.1LG06g01170Wax gourdcpewgoB0973
Cp4.1LG06g01170Cucurbita pepo (Zucchini)cpecpeB323
Cp4.1LG06g01170Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g01170Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g01170Cucumber (Gy14) v1cgycpeB0613
Cp4.1LG06g01170Cucurbita maxima (Rimu)cmacpeB198
Cp4.1LG06g01170Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01170Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01170Watermelon (Charleston Gray)cpewcgB708