Cp4.1LG06g01120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal protein L24e family protein
LocationCp4.1LG06 : 559778 .. 561970 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTTGTTTGATTCAGTTTCCTTTTCTCTTCGTTTTTTTCTTTTATCATATTATGATTATGTATGCGTAGTCTTTGTTTCTGGTATGATTGATTGATCCGTTGTCATTACTTCGACGATGTATTTACAATTGCTAGATTTCGAATTCATGAGAATGAGAATTTCTCCTGATTCATCGCATTTTGCTAAACCTTCTCTTTTATTTCTTCTTTCAATCACTAATGGGCATAACTTTAACACTTTGAAGATTCTATTGAATCACAAGACATTTGCCTAATCAAAGATTATTGCGTTGACAGAATCTATTAAGAGATTCCAACCAAAAAGTATAAATTTAATGCAAATACCCAAACTATGATGTTTACTGGCATTTGCATTTTGTTATTGTACTATTGTGCAGCTTCACTAATGTGGTTCCGTTCTATTTCAAACCACTTTCAGCATTGGTTGATCTCTTGTATGAAGGCAGGGGCTCCCTTCTGTAATGCCATATTTTTTGTAATAAATAAAATATATTTTCCTTTCCCTTTGATTTTTTTATTATTTCTGTTTCAATCTTTCTTTCCGTATAATAAATAAAATAGAAGTAATAAAGAAAAACGAATGGCAAAAAACGGGGGAAAAAAAAAAAGCTTGACTTGCTGTTTAAAACCCTATTTCACTTCAGCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGTTATATATTTTGTTTCGCTTGGTTATGTTGACTTATTCTCTTCACACACGGTGAAGAAAGTCGAGAACCTTTCTTTTCTTGTTGATTTCTTCTTCAACCAATGTTCACCTAGATTTCAAGTTCCTTAGATTTGAAATTAAAACAAGAATGTATACCTTAGATTTCAAATTCCTTGTTTTTTTTTTTTCATCCAAATTCTGGGGTTCCAAAGAGTGGTAAACTTGCGCTTAAAGTTATAATCCAAGTAAGCCGAGCGTTTTCGCAGGGGGTGGGAGTATGTTAAATTTCTGAACTATTTAGCTTTTTAGAGAGATTGTTTCTCCGTTTCAGTCGATCTTCTGAATATATAAGTTGCAGTTCATTTGATTTTCTCTTGCCCGTGCCTTTTGTGTGCAGGAAATTTATAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGGTAAGATTTAACCAACCTTTTGTGATTTGTTGTTTGTGATGCATATTAGGCTGTTGAAGTTGATAATTGTTCTTGTTAAACTAGTGATGATGGACAGGGAGCCCTATGTTTCTACTTCCTAATCTGATTTTTCTGCAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGGTTTTAAATTTCTTCCATTGCCGTTTGTTGTATGCCTATATATTTTGTGAATACTGCTTCTTGTGGTGTAACTCGGGATCGTTCGCGTTTGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGAGTTTGTTACTCTTATATCATTATATCTAATATTTACGTCATAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATTGTTCTTTAATCATTTCTTGCTTC

mRNA sequence

ATGGACCTTCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGAGTTTGTTACTCTTATATCATTATATCTAATATTTACGTCATAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATTGTTCTTTAATCATTTCTTGCTTC

Coding sequence (CDS)

ATGGACCTTCTACCCCCTCCCCCCATTACCCGCCACTGCACCCCGCCTGACGCTCGGGGTTCCTGCCCGACACAGTCTCAGCGGCTACCGCCGCACGCTGCACTCTCGGCTGCTGTCAGCCTTCCCTCGAAATTGCCGTCGGTGGTTCAGCACCAATCCCTCGCCGTTGGTGCGATCGCATCGCCGCCACTCATTTGCCAGTTCCCCAAGGCTTGTTATTTGATCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCATATGGAAGAATGA

Protein sequence

MDLLPPPPITRHCTPPDARGSCPTQSQRLPPHAALSAAVSLPSKLPSVVQHQSLAVGAIASPPLICQFPKACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE
Homology
[Close]
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.6e-57
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
            +  KELDQ+I +V+AP A          KIK++V   ++ QN  MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match: RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.5e-42
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  +YPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      RM+G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 199 REAKKELDQSISLVKAPLALKE 221
           ++  KE++Q++SL++ P AL +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.7e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDVKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.7e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.8e-40
Identity = 79/143 (55.24%), Postives = 115/143 (80.42%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 199 REAK--KELDQSISLVKAPLALK 220
           ++ +  KE+ Q+I L++APLA K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match: A0A0A0LQI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385010 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 149/176 (84.66%), Postives = 163/176 (92.61%), Query Frame = 1 

Query: 70  KACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKW 129
           + CYL+KKRMRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKW
Sbjct: 82  RVCYLLKKRMRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKW 141

Query: 130 TKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARR 189
           TKAYRRLHGKDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR
Sbjct: 142 TKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARR 201

Query: 190 MQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
            QGKKAKE REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 202 HQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match: A0A0A0LIW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855990 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 5.0e-74
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match: A5C6X2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.8e-71
Identity = 139/168 (82.74%), Postives = 153/168 (91.07%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 57  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 116

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRN+ E TL+AIKKIDKVR +RE+RH A RM+GKKAKE 
Sbjct: 117 KDMTQDSTFEFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQ 176

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
           REA KEL+QSI +VKAP  L+++PSLTLPKIK+ V   Q+E+NH MEE
Sbjct: 177 REAAKELEQSIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 224

[Close]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match: D7TJ26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.3e-71
Identity = 140/168 (83.33%), Postives = 152/168 (90.48%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNL E TL+AIKKIDKVR +RE+RH A RM+GKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQ 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
           REA KEL+Q I +VKAP  L+++PSLTLPKIK+ V   QAE+NH MEE
Sbjct: 121 REAAKELEQGIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168

[Close]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match: A0A068V7P7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019297001 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 6.7e-71
Identity = 136/167 (81.44%), Postives = 150/167 (89.82%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRN+TE TL+AIKKIDKVR +RE+RH   RM+GKK  E 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKKIDKVRVDREARHHTMRMRGKKTMEQ 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REA KEL+QSI +VKAP  L+++PSLTLPKIK+ V   Q+E+N MEE
Sbjct: 121 REAAKELEQSIHMVKAPALLQQEPSLTLPKIKVKVSQQQSEENRMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-58
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 246
            +  KELDQ+I +V+AP A          KIK++V   ++ QN  MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-13
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKK-------IDKVRAERESRHIARRMQ 198
           KD  Q++     R   +P  Y R++   TL  I+K       +     E   R I  R++
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 199 ----GKKAKELREAKKELDQSISLVKAPLALK 220
                KKAK++  A K+     +  KA  A K
Sbjct: 123 KTKDEKKAKKVEFASKQQKVKANFPKAAAASK 152

[Close]
BLAST of Cp4.1LG06g01120 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24)

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-13
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAER-ESRHIARRMQGKKAKE 198
           KD  Q++     R   +P  Y R++   TL  I+   K RAE+ E R  AR       +E
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQ---KKRAEKPEVRDAARE---AALRE 122

Query: 199 LREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAE 240
           ++E  K+        K   A K+  S     I  +  P  A+
Sbjct: 123 IKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAK 156

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: gi|700207913|gb|KGN63032.1| (hypothetical protein Csa_2G385010 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-78
Identity = 149/176 (84.66%), Postives = 163/176 (92.61%), Query Frame = 1 

Query: 70  KACYLIKKRMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKW 129
           + CYL+KKRMRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKW
Sbjct: 82  RVCYLLKKRMRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKW 141

Query: 130 TKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARR 189
           TKAYRRLHGKDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR
Sbjct: 142 TKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARR 201

Query: 190 MQGKKAKELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
            QGKKAKE REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 202 HQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: gi|778672743|ref|XP_011649861.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 7.1e-74
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: gi|659133122|ref|XP_008466567.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 9.3e-74
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: gi|659113416|ref|XP_008456562.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.6e-73
Identity = 142/167 (85.03%), Postives = 155/167 (92.81%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKAKE 
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V P+Q+EQ+ MEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match: gi|1009166972|ref|XP_015901873.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Ziziphus jujuba])

HSP 1 Score: 279.6 bits (714), Expect = 5.1e-72
Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 1 

Query: 79  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 138
           MRLEKCWFCSST+YPGHG+QFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGVQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 139 KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 198
           KDMTQDSTFEFERKRNRPERYDRNLTE TL+AIKKIDKVRA RE++HI RRM GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTENTLKAIKKIDKVRATREAKHIERRMTGKKAKEL 120

Query: 199 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNHMEE 246
           REA+KEL+Q+ISLVKAP  LKEDPSLTLP IK+ V   Q E   MEE
Sbjct: 121 REAQKELEQNISLVKAPALLKEDPSLTLP-IKVKVSQKQPEVQLMEE 166

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLP24_ARATH4.6e-5769.05Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 ... [more]
RLP24_DICDI2.5e-4255.63Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 ... [more]
RLP24_BOVIN6.7e-4055.24Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1[more]
RLP24_MOUSE6.7e-4055.24Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1[more]
RLP24_HUMAN8.8e-4055.24Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1[more]
BLAST of Cp4.1LG06g01120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQI2_CUCSA1.5e-7884.66Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385010 PE=4 SV=1[more]
A0A0A0LIW9_CUCSA5.0e-7485.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855990 PE=4 SV=1[more]
A5C6X2_VITVI1.8e-7182.74Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1[more]
D7TJ26_VITVI2.3e-7183.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=... [more]
A0A068V7P7_COFCA6.7e-7181.44Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019297001 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01120 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44860.12.6e-5869.05 Ribosomal protein L24e family protein[more]
AT3G53020.12.6e-1333.55 Ribosomal protein L24e family protein[more]
AT2G36620.17.4e-1333.33 ribosomal protein L24[more]
BLAST of Cp4.1LG06g01120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207913|gb|KGN63032.1|2.1e-7884.66hypothetical protein Csa_2G385010 [Cucumis sativus][more]
gi|778672743|ref|XP_011649861.1|7.1e-7485.63PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis sativus][more]
gi|659133122|ref|XP_008466567.1|9.3e-7485.63PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
gi|659113416|ref|XP_008456562.1|1.6e-7385.03PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
gi|1009166972|ref|XP_015901873.1|5.1e-7285.63PREDICTED: probable ribosome biogenesis protein RLP24 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: INTERPRO
TermDefinition
IPR024546Ribosome biogenesis protein RLP24
IPR023442Ribosomal_L24e_CS
IPR023441Ribosomal protein L24e domain
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:1902626 assembly of large subunit precursor of preribosome
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01120.1Cp4.1LG06g01120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 80..245
score: 2.4
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 79..143
score: 2.5
IPR011017TRASH domainSMARTSM007464TRASHcoord: 84..122
score: 2.6
IPR023441Ribosomal protein L24e domainGENE3DG3DSA:2.30.170.20coord: 79..144
score: 1.9
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 86..103
scor
IPR024546Ribosome biogenesis protein RLP24PANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 80..245
score: 2.4
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 82..134
score: 7.41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01120Cucsa.342330Cucumber (Gy14) v1cgycpeB0896
Cp4.1LG06g01120CmaCh09G001590Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01120CmoCh09G001580Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01120Cla020762Watermelon (97103) v1cpewmB765
Cp4.1LG06g01120Csa3G855990Cucumber (Chinese Long) v2cpecuB779
Cp4.1LG06g01120MELO3C003834Melon (DHL92) v3.5.1cpemeB726
Cp4.1LG06g01120ClCG05G018990Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01120CSPI03G42690Wild cucumber (PI 183967)cpecpiB781
Cp4.1LG06g01120Lsi04G016620Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01120MELO3C003834.2Melon (DHL92) v3.6.1cpemedB859
Cp4.1LG06g01120CsaV3_3G045120Cucumber (Chinese Long) v3cpecucB0966
Cp4.1LG06g01120Bhi11G002174Wax gourdcpewgoB0973
Cp4.1LG06g01120CsGy3G040220Cucumber (Gy14) v2cgybcpeB438
Cp4.1LG06g01120Carg08725Silver-seed gourdcarcpeB0154
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01120Cucumber (Chinese Long) v3cpecucB0961
Cp4.1LG06g01120Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g01120Cucurbita pepo (Zucchini)cpecpeB323
Cp4.1LG06g01120Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g01120Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g01120Cucumber (Gy14) v1cgycpeB0613
Cp4.1LG06g01120Cucurbita maxima (Rimu)cmacpeB198
Cp4.1LG06g01120Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01120Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01120Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01120Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01120Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01120Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01120Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g01120Watermelon (97103) v1cpewmB756
Cp4.1LG06g01120Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01120Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01120Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01120Silver-seed gourdcarcpeB0267
Cp4.1LG06g01120Silver-seed gourdcarcpeB1310
Cp4.1LG06g01120Silver-seed gourdcarcpeB1365