Carg08725 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08725
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein L24-like protein
Location	Cucurbita_argyrosperma_scaffold_057 : 681624 .. 682563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGAAGGTAAGATTTAACCAACCTTTTGTGATTTGTTGTTTGTGATGCATATTAGGCTGTTGAAGTTGATAATTGTTCTTGTTAAACTAGTGATGATGGACAGGGAGCCCTATGTTTCTACTTCCTAATCTGATTTTTCTGCAGATTTTTAGATTTTGTCGGTCGAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGGTTTTAAATTTCTTCCATTGCCATTTGTTGTGTGCCTATATATTTTGTGAATACTGCTTCTTGTGGTGTAACTCGGGATCGTTCGCGTTTGCAGAATGCAAGGAAAGAAAGCACAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCAGAGTATGGAAGAATGAGTTTGTTACTCTTATATCACTATATCAAATATTTACGTCGTAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATGTTTCTTTAATCATTTCTTGCTGCTTTTTTTGTCTTGCTTCTTTCGTACATTTTGTTGAAAAGGGTATTTG

mRNA sequence

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCGAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCACAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCAGAGTATGGAAGAATGAGTTTGTTACTCTTATATCACTATATCAAATATTTACGTCGTAATTACTTTTTCACATATCTCGAACTGCTACAATTCTTATGCAGTGGTAGATTGTCATTGTTTGTTCTATAGAATTTCATTTTGAGAATGTTTCTTTAATCATTTCTTGCTGCTTTTTTTGTCTTGCTTCTTTCGTACATTTTGTTGAAAAGGGTATTTG

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCGAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGCAAAGTAAAATGGACCAAGGCCTATAGAAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACGGAAGAGACATTGAGGGCTATTAAGAAGATTGATAAAGTCAGAGCAGAAAGGGAGTCGAGGCACATTGCACGCAGAATGCAAGGAAAGAAAGCACAGGAACTCAGAGAGGCAAAGAAGGAATTGGATCAGAGCATCAGTTTGGTCAAAGCTCCTCTTGCTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAACTCAATGTGGAACCATCACAAGCAGAGCAAAATCAGAGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQELREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE

Homology

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BLAST of Carg08725 vs. NCBI nr
Match: XP_022976358.1 (probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima])

HSP 1 Score: 323.9 bits (829), Expect = 3.1e-85
Identity = 165/168 (98.21%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REAKKELDQSISLVKAPLALKEDPSLTLPKIK++VEPSQAEQNQSMEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of Carg08725 vs. NCBI nr
Match: XP_022936461.1 (probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936462.1 probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936463.1 probable ribosome biogenesis protein RLP24 [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 5.9e-84
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRND KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDTKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPER DRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERCDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REAKKELDQSISLVKAPLALKEDPSL LPKIKLNVEPSQAEQNQSMEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLILPKIKLNVEPSQAEQNQSMEE 168

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BLAST of Carg08725 vs. NCBI nr
Match: XP_023535971.1 (probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQN  MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNH-MEE 167

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BLAST of Carg08725 vs. NCBI nr
Match: XP_022135604.1 (probable ribosome biogenesis protein RLP24 [Momordica charantia])

HSP 1 Score: 305.8 bits (782), Expect = 8.9e-80
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RESRHIARRMQGKKA+EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           +EA+KELDQSISLVKAP  LKEDPSLTLPKIK+ V  SQAEQNQ+MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

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BLAST of Carg08725 vs. NCBI nr
Match: XP_022148700.1 (probable ribosome biogenesis protein RLP24 [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 2.6e-79
Identity = 154/168 (91.67%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RESRHIARRMQGKK +EL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           +EA+KELDQSISLVKAP  LKEDPSLTLPKIK+ V  SQAEQNQ+ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

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BLAST of Carg08725 vs. TAIR10
Match: AT2G44860.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-60
Identity = 115/168 (68.45%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K ++L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
            +  KELDQ+I +V+AP A          KIK++V   ++ QN++MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

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BLAST of Carg08725 vs. TAIR10
Match: AT3G53020.1 (Ribosomal protein L24e family protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-13
Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKK-------IDKVRAERESRHIARRMQ 120
           KD  Q++     R   +P  Y R++   TL  I+K       +     E   R I  R++
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 ----GKKAQELREAKKELDQSISLVKAPLALK 142
                KKA+++  A K+     +  KA  A K
Sbjct: 123 KTKDEKKAKKVEFASKQQKVKANFPKAAAASK 152

[Close]

BLAST of Carg08725 vs. TAIR10
Match: AT2G36620.1 (ribosomal protein L24)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 53/162 (32.72%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAER-ESRHIARRMQGKKAQE 120
           KD  Q++     R   +P  Y R++   TL  I+   K RAE+ E R  AR       +E
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQ---KKRAEKPEVRDAARE---AALRE 122

Query: 121 LREAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAE 162
           ++E  K+            A K+  S     I  +  P  A+
Sbjct: 123 IKERIKKTXXXXXXXXXEYASKQQKSQVKGNIPKSAAPKAAK 156

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BLAST of Carg08725 vs. Swiss-Prot
Match: sp|O22165|RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-58
Identity = 115/168 (68.45%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R++  K ++L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
            +  KELDQ+I +V+AP A          KIK++V   ++ QN++MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

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BLAST of Carg08725 vs. Swiss-Prot
Match: sp|Q86B05|RLP24_DICDI (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-43
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      RM+G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPLALKE 143
           ++  KE++Q++SL++ P AL +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

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BLAST of Carg08725 vs. Swiss-Prot
Match: sp|Q99L28|RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-40
Identity = 75/141 (53.19%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R++  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAPLALK 142
            +  KE+ Q+I L++APLA K
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of Carg08725 vs. Swiss-Prot
Match: sp|Q9UHA3|RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-39
Identity = 75/141 (53.19%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R++  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAPLALK 142
            +  KE+ Q+I L++APLA K
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of Carg08725 vs. Swiss-Prot
Match: sp|Q5RF04|RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-39
Identity = 74/141 (52.48%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+++ I  R++  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAPLALK 142
            +  KE+ Q+I L++APLA K
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of Carg08725 vs. TrEMBL
Match: tr|A0A218XBI6|A0A218XBI6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr001640 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNL E TLRAIKKIDKVR ERE+RH A RM+GKKA+E 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENTLRAIKKIDKVRVEREARHHALRMKGKKAKEH 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           +EA+KEL+QSI L+KAP  L++DPSLTLPKI++ V   Q+E+N +MEE
Sbjct: 121 KEAQKELEQSIHLIKAPAVLQQDPSLTLPKIQVKVSQQQSEENHAMEE 168

[Close]

BLAST of Carg08725 vs. TrEMBL
Match: tr|A0A2I0HXD8|A0A2I0HXD8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_043236 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRNL E TL+AIKKIDKVR +RE+RH A RM+GKKA+E 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQ 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           +EA+KEL+Q I L+KAP  L+EDPSLTLPKIK+ V   Q+E+NQ+MEE
Sbjct: 121 KEAQKELEQHIHLLKAPAVLQEDPSLTLPKIKVKVSQQQSEENQAMEE 168

[Close]

BLAST of Carg08725 vs. TrEMBL
Match: tr|A0A0A0LIW9|A0A0A0LIW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.4e-72
Identity = 142/168 (84.52%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKA+E 
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ++ MEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDR-MEE 167

[Close]

BLAST of Carg08725 vs. TrEMBL
Match: tr|A0A0A0LQI2|A0A0A0LQI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.4e-72
Identity = 142/168 (84.52%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TL+AIKKIDK+R +RESRHIARR QGKKA+E 
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REAKKELDQSISLVKAP  LKEDPSLTLPK+K+ V PSQ+EQ++ MEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDR-MEE 257

[Close]

BLAST of Carg08725 vs. TrEMBL
Match: tr|A0A2I4ECF5|A0A2I4ECF5_9ROSI (probable ribosome biogenesis protein RLP24 OS=Juglans regia OX=51240 GN=LOC108988299 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.5e-72
Identity = 142/168 (84.52%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRIEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAQEL 120
           KDMTQDSTFEFERKRNRPERYDRN+TE TL+AIK IDKVR+ RE++HI RR +GKKAQ++
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVTENTLKAIKTIDKVRSRREAKHIERRKKGKKAQQM 120

Query: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKLNVEPSQAEQNQSMEE 169
           REA KEL+QSISLVKAP  LKEDPSLTLPKIK+ V  + AE NQ MEE
Sbjct: 121 REAVKELEQSISLVKAPSVLKEDPSLTLPKIKVKVSQALAE-NQPMEE 167

The following BLAST results are available for this feature:

BLAST of Carg08725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976358.1	3.1e-85	98.21	probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 pr...	[more]
XP_022936461.1	5.9e-84	97.62	probable ribosome biogenesis protein RLP24 [Cucurbita moschata] >XP_022936462.1 ...	[more]
XP_023535971.1	1.0e-83	98.21	probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo]	[more]
XP_022135604.1	8.9e-80	92.26	probable ribosome biogenesis protein RLP24 [Momordica charantia]	[more]
XP_022148700.1	2.6e-79	91.67	probable ribosome biogenesis protein RLP24 [Momordica charantia]	[more]

BLAST of Carg08725 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44860.1	9.5e-60	68.45	Ribosomal protein L24e family protein	[more]
AT3G53020.1	2.3e-13	32.89	Ribosomal protein L24e family protein	[more]
AT2G36620.1	2.5e-12	32.72	ribosomal protein L24	[more]

BLAST of Carg08725 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22165\|RLP24_ARATH	1.7e-58	68.45	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
sp\|Q86B05\|RLP24_DICDI	5.9e-43	55.63	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
sp\|Q99L28\|RLP24_MOUSE	8.0e-40	53.19	Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P...	[more]
sp\|Q9UHA3\|RLP24_HUMAN	1.0e-39	53.19	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]
sp\|Q5RF04\|RLP24_PONAB	2.3e-39	52.48	Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE...	[more]

BLAST of Carg08725 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A218XBI6\|A0A218XBI6_PUNGR	1.5e-72	83.33	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr001640 PE=4 SV=1	[more]
tr\|A0A2I0HXD8\|A0A2I0HXD8_PUNGR	1.5e-72	83.33	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_043236 PE=4 SV=1	[more]
tr\|A0A0A0LIW9\|A0A0A0LIW9_CUCSA	3.4e-72	84.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=4 SV=1	[more]
tr\|A0A0A0LQI2\|A0A0A0LQI2_CUCSA	3.4e-72	84.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=4 SV=1	[more]
tr\|A0A2I4ECF5\|A0A2I4ECF5_9ROSI	4.5e-72	84.52	probable ribosome biogenesis protein RLP24 OS=Juglans regia OX=51240 GN=LOC10898...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023442	Ribosomal_L24e_CS
IPR000988	Ribosomal_L24e-rel
IPR038630	L24e/L24_sf
IPR011017	TRASH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08725-RA	Carg08725-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 2.6E-12 score: 56.9
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	G3DSA:2.30.170.20		coord: 1..69 e-value: 3.0E-33 score: 115.6
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 1.2E-34 score: 118.2
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..156
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 1.83109E-30 score: 105.732
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168
None	No IPR available	PANTHER	PTHR10792:SF8	RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED	coord: 1..156
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 8..25

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08725	Cla020762	Watermelon (97103) v1	carwmB0102
Carg08725	Csa3G855990	Cucumber (Chinese Long) v2	carcuB0111
Carg08725	MELO3C003834	Melon (DHL92) v3.5.1	carmeB0106
Carg08725	ClCG05G018990	Watermelon (Charleston Gray)	carwcgB0104
Carg08725	CSPI03G42690	Wild cucumber (PI 183967)	carcpiB0116
Carg08725	Cucsa.342330	Cucumber (Gy14) v1	carcgyB0126
Carg08725	CmaCh09G001590	Cucurbita maxima (Rimu)	carcmaB0134
Carg08725	CmoCh09G001580	Cucurbita moschata (Rifu)	carcmoB0144
Carg08725	Lsi04G016620	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08725	Cp4.1LG06g01120	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08725	CsGy3G040220	Cucumber (Gy14) v2	carcgybB0111
Carg08725	MELO3C003834.2	Melon (DHL92) v3.6.1	carmedB0108
Carg08725	CsaV3_3G045120	Cucumber (Chinese Long) v3	carcucB0120
Carg08725	Cla97C05G100490	Watermelon (97103) v2	carwmbB0107
Carg08725	Bhi11G002174	Wax gourd	carwgoB0116

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08725	Cucumber (Gy14) v2	carcgybB0110
Carg08725	Cucumber (Gy14) v2	carcgybB0114
Carg08725	Cucumber (Gy14) v1	carcgyB0124
Carg08725	Cucurbita maxima (Rimu)	carcmaB0135
Carg08725	Cucurbita maxima (Rimu)	carcmaB0136
Carg08725	Cucurbita maxima (Rimu)	carcmaB0137
Carg08725	Cucurbita moschata (Rifu)	carcmoB0145
Carg08725	Cucurbita moschata (Rifu)	carcmoB0146
Carg08725	Cucurbita moschata (Rifu)	carcmoB0147
Carg08725	Cucurbita pepo (Zucchini)	carcpeB0152
Carg08725	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08725	Cucurbita pepo (Zucchini)	carcpeB0155
Carg08725	Wild cucumber (PI 183967)	carcpiB0115
Carg08725	Cucumber (Chinese Long) v2	carcuB0110
Carg08725	Cucumber (Chinese Long) v3	carcucB0119
Carg08725	Bottle gourd (USVL1VR-Ls)	carlsiB096
Carg08725	Melon (DHL92) v3.5.1	carmeB0105
Carg08725	Melon (DHL92) v3.6.1	carmedB0107
Carg08725	Watermelon (Charleston Gray)	carwcgB0103
Carg08725	Watermelon (Charleston Gray)	carwcgB0106
Carg08725	Watermelon (97103) v1	carwmB0101
Carg08725	Watermelon (97103) v2	carwmbB0105
Carg08725	Watermelon (97103) v2	carwmbB0109
Carg08725	Wax gourd	carwgoB0120
Carg08725	Silver-seed gourd	carcarB119
Carg08725	Silver-seed gourd	carcarB125
Carg08725	Silver-seed gourd	carcarB126