Cp4.1LG06g00110 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g00110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHeavy metal transport/detoxification superfamily protein
LocationCp4.1LG06 : 14086 .. 14405 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCCTGTCGAAGTTGAAAGGTAAAGGGAAAAGGGAGAGGAGGAGGAAGAGGAATTGAAGGACTGTGAATGTTAATAATGTGAATGTTAATGATGAGCAGGGGTGGAGAAGGTGGAGGTGGACGCAGGCAGGCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGGAGAGGTGGTCTGAAAGCCGACTTCTGGTCCCCCCAAAACGAGCTCCTTAGTGCCTATGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAG

mRNA sequence

ATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCCTGTCGAAGTTGAAAGGGGTGGAGAAGGTGGAGGTGGACGCAGGCAGGCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGGAGAGGTGGTCTGAAAGCCGACTTCTGGTCCCCCCAAAACGAGCTCCTTAGTGCCTATGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAG

Coding sequence (CDS)

ATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCCTGTCGAAGTTGAAAGGGGTGGAGAAGGTGGAGGTGGACGCAGGCAGGCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGGAGAGGTGGTCTGAAAGCCGACTTCTGGTCCCCCCAAAACGAGCTCCTTAGTGCCTATGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAG

Protein sequence

MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQNELLSAYGAFRFCPYTSFFF
Homology
[Close]
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match: A0A0A0L1F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664450 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-28
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRK LSKLKGVEKVEVDA  QKVAV SYIHRNKILKAIRR GLKADFWS QN
Sbjct: 1  MVGIHEKRLRKCLSKLKGVEKVEVDANSQKVAVSSYIHRNKILKAIRRSGLKADFWSAQN 60

Query: 61 ELLSA----YGAFRFCPYTSFF 79
          ELL+A    YGAFRF PY SFF
Sbjct: 61 ELLNAYATTYGAFRFSPYNSFF 82

[Close]
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match: A0A067KKX5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08038 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-23
Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRKSLSKLKG+EKVEVDA  QKV V  Y HRNKILKA+RRGGLKADFWS QN
Sbjct: 10 MVGIHEKRLRKSLSKLKGIEKVEVDANSQKVVVTGYAHRNKILKAVRRGGLKADFWSAQN 69

Query: 61 ELLSA------YGAFRFCPYTSF 78
          ELL+A      YG+ RF  +  F
Sbjct: 70 ELLNAYTSSATYGSLRFNNFNFF 92

[Close]
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match: B9R8T1_RICCO (Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-23
Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRKSLSKL+G+EKVEVDA  QKV V  Y HRNKILKAIRRGGLKADFWS QN
Sbjct: 10 MVGIHEKRLRKSLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADFWSAQN 69

Query: 61 ELLSA------YGAFRFCPYTSF 78
          ELL+A      YG+ RF  +  F
Sbjct: 70 ELLNAYACSASYGSLRFNNFNFF 92

[Close]
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match: B9GPP0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s00680g PE=4 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1 

Query: 1   MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
           MVGIHEKRLRK LSKLKG+EKVEVD   QKV V  Y HRNKILKAIRRGGLKADFWSPQN
Sbjct: 53  MVGIHEKRLRKCLSKLKGIEKVEVDVNIQKVVVTGYAHRNKILKAIRRGGLKADFWSPQN 112

Query: 61  ELLSAYGA 69
           ELLS Y +
Sbjct: 113 ELLSVYAS 120

[Close]
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match: V4TG72_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003432mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-22
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRK LSKL+G+EKVEVDA  QKV V  Y HRNKILKAIRRGGLKADFWS QN
Sbjct: 12 MVGIHEKRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADFWSAQN 71

Query: 61 ELLSAYGA 69
          ELLSAY +
Sbjct: 72 ELLSAYAS 79

[Close]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match: AT3G56891.1 (AT3G56891.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-09
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 6  EKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFW 57
          EK++R+++SKL GV+ VE+D  RQKV V  Y+ R ++LK ++R G  A++W
Sbjct: 30 EKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEYW 80

[Close]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match: AT3G48970.1 (AT3G48970.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 8  RLRKSLSKLKGVEKVEVDAGRQKVAVRSY-IHRNKILKAIRRGGLKADFW 57
          +LRK+L KLKGVE+VEV+   QKV  R Y +   K+LKA+RR G  A+ W
Sbjct: 20 KLRKTLLKLKGVEEVEVEMETQKVTARGYRLEEKKVLKAVRRAGKAAELW 69

[Close]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match: AT4G10465.1 (AT4G10465.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 9   LRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQNE 62
           +R ++SKL+GV+ VEVD    +V V  Y+ RNK+LKA+RR G +A+F SP  E
Sbjct: 68  VRNAISKLRGVDSVEVDKELGRVRVVGYVDRNKVLKAVRRAGKRAEF-SPYPE 119

[Close]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match: AT2G18196.1 (AT2G18196.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.6e-07
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 6   EKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFW 57
           E+ ++ ++ KL+GV+ VEV+   ++V V  Y+ R K+LKA+RR G +A+FW
Sbjct: 60  ERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRRAGKRAEFW 110

[Close]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match: AT1G06330.1 (AT1G06330.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 7.5e-07
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 6  EKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFW 57
          E R++ +L K++GV+ VE+D  +QKV V  Y  + K+LK +R+ G +A+ W
Sbjct: 25 ESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRRAELW 75

[Close]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match: gi|449455732|ref|XP_004145605.1| (PREDICTED: copper transport protein ATX1-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRK LSKLKGVEKVEVDA  QKVAV SYIHRNKILKAIRR GLKADFWS QN
Sbjct: 10 MVGIHEKRLRKCLSKLKGVEKVEVDANSQKVAVSSYIHRNKILKAIRRSGLKADFWSAQN 69

Query: 61 ELLSA----YGAFRFCPYTSFF 79
          ELL+A    YGAFRF PY SFF
Sbjct: 70 ELLNAYATTYGAFRFSPYNSFF 91

[Close]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match: gi|700200380|gb|KGN55538.1| (hypothetical protein Csa_4G664450 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRK LSKLKGVEKVEVDA  QKVAV SYIHRNKILKAIRR GLKADFWS QN
Sbjct: 1  MVGIHEKRLRKCLSKLKGVEKVEVDANSQKVAVSSYIHRNKILKAIRRSGLKADFWSAQN 60

Query: 61 ELLSA----YGAFRFCPYTSFF 79
          ELL+A    YGAFRF PY SFF
Sbjct: 61 ELLNAYATTYGAFRFSPYNSFF 82

[Close]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match: gi|1009133798|ref|XP_015884097.1| (PREDICTED: copper transport protein ATX1-like [Ziziphus jujuba])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 61/83 (73.49%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRK LSKLKG+EKVEVDA  QKV V  Y HRNKILKAIRRGGLKADFWS QN
Sbjct: 10 MVGIHEKRLRKCLSKLKGIEKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADFWSAQN 69

Query: 61 ELLSA-----YGAFRFCPYTSFF 79
          ELL A     YG+ RF  + +FF
Sbjct: 70 ELLHAYASASYGSLRFSNFNNFF 92

[Close]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match: gi|729332698|ref|XP_010537231.1| (PREDICTED: copper transport protein ATX1-like [Tarenaya hassleriana])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MV IHEKRLRKSLSKLKG+EKVEVDA  QKV V SYIHRNKIL+A+RR GLKA+FWSP N
Sbjct: 10 MVCIHEKRLRKSLSKLKGIEKVEVDADSQKVMVTSYIHRNKILRAVRRSGLKAEFWSPHN 69

Query: 61 ELLSAY------GAFRFCPYTSF 78
          ELLSAY       AFRF P+  F
Sbjct: 70 ELLSAYVTPTYHSAFRFTPFNFF 92

[Close]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match: gi|802604429|ref|XP_012073581.1| (PREDICTED: copper transport protein ATX1-like [Jatropha curcas])

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-23
Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 1 

Query: 1  MVGIHEKRLRKSLSKLKGVEKVEVDAGRQKVAVRSYIHRNKILKAIRRGGLKADFWSPQN 60
          MVGIHEKRLRKSLSKLKG+EKVEVDA  QKV V  Y HRNKILKA+RRGGLKADFWS QN
Sbjct: 10 MVGIHEKRLRKSLSKLKGIEKVEVDANSQKVVVTGYAHRNKILKAVRRGGLKADFWSAQN 69

Query: 61 ELLSA------YGAFRFCPYTSF 78
          ELL+A      YG+ RF  +  F
Sbjct: 70 ELLNAYTSSATYGSLRFNNFNFF 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g00110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g00110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1F1_CUCSA8.6e-2884.15Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664450 PE=4 SV=1[more]
A0A067KKX5_JATCU4.9e-2372.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08038 PE=4 SV=1[more]
B9R8T1_RICCO8.3e-2372.29Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=... [more]
B9GPP0_POPTR1.1e-2282.35Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s00680g P... [more]
V4TG72_9ROSI1.4e-2282.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003432mg PE=4 SV=1[more]
BLAST of Cp4.1LG06g00110 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56891.14.7e-0947.06 Heavy metal transport/detoxification superfamily protein [more]
AT3G48970.18.8e-0854.00 Heavy metal transport/detoxification superfamily protein [more]
AT4G10465.18.8e-0850.94 Heavy metal transport/detoxification superfamily protein [more]
AT2G18196.12.6e-0743.14 Heavy metal transport/detoxification superfamily protein [more]
AT1G06330.17.5e-0741.18 Heavy metal transport/detoxification superfamily protein [more]
BLAST of Cp4.1LG06g00110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455732|ref|XP_004145605.1|1.2e-2784.15PREDICTED: copper transport protein ATX1-like [Cucumis sativus][more]
gi|700200380|gb|KGN55538.1|1.2e-2784.15hypothetical protein Csa_4G664450 [Cucumis sativus][more]
gi|1009133798|ref|XP_015884097.1|1.8e-2373.49PREDICTED: copper transport protein ATX1-like [Ziziphus jujuba][more]
gi|729332698|ref|XP_010537231.1|1.8e-2373.49PREDICTED: copper transport protein ATX1-like [Tarenaya hassleriana][more]
gi|802604429|ref|XP_012073581.1|7.0e-2372.29PREDICTED: copper transport protein ATX1-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g00110.1Cp4.1LG06g00110.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006121Heavy metal-associated domain, HMAPFAMPF00403HMAcoord: 6..48
score: 9.
IPR006121Heavy metal-associated domain, HMAunknownSSF55008HMA, heavy metal-associated domaincoord: 7..59
score: 5.2
NoneNo IPR availableGENE3DG3DSA:3.30.70.100coord: 7..57
score: 4.
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 1..58
score: 1.8
NoneNo IPR availablePANTHERPTHR22814:SF125SUBFAMILY NOT NAMEDcoord: 1..58
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g00110Cucsa.272400Cucumber (Gy14) v1cgycpeB0712
Cp4.1LG06g00110CmoCh09G000280Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g00110CmoCh01G020950Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g00110Cla023474Watermelon (97103) v1cpewmB777
Cp4.1LG06g00110Csa4G664450Cucumber (Chinese Long) v2cpecuB787
Cp4.1LG06g00110MELO3C017056Melon (DHL92) v3.5.1cpemeB731
Cp4.1LG06g00110ClCG11G019020Watermelon (Charleston Gray)cpewcgB696
Cp4.1LG06g00110CSPI04G27230Wild cucumber (PI 183967)cpecpiB789
Cp4.1LG06g00110MELO3C017056.2Melon (DHL92) v3.6.1cpemedB864
Cp4.1LG06g00110CsaV3_4G037620Cucumber (Chinese Long) v3cpecucB0974
Cp4.1LG06g00110Bhi09G002358Wax gourdcpewgoB0992
Cp4.1LG06g00110CsGy4G025530Cucumber (Gy14) v2cgybcpeB567
Cp4.1LG06g00110Carg21349Silver-seed gourdcarcpeB0499
Cp4.1LG06g00110Carg08607Silver-seed gourdcarcpeB0154
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g00110Cp4.1LG02g08640Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g00110Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g00110Cucurbita maxima (Rimu)cmacpeB507