CmoCh09G000280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Heavy metal transport/detoxification superfamily protein
Location	Cmo_Chr09 : 138480 .. 139361 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATCAAATGCTCTTTTCAGCGTAGCTTTGATTTGAGAGCAGAACAGGACGGAACAGGGGATCCTTGAATCTTCTCGTAATTTGGTTCTCTGTCTGTCGGTTTCTTTGGAAAAAAAAGGAAAGATTGGAGTTGACCCCACTTTTGTTCTGCTACAGCCTGTGTGTGTATATAAACCCTTCTGCCCTCTCCCCTGCTTCTCCTCTGCACTTCAGCTCTTGAACCCTCCATTTGTTTGCTCTGTTTCCTCCAGGCCATCCACTTCCATGGAGGTAACCATTTAATCCATGTAGATCAGTATTAATATAGTATTATTACTATTATGTGAGGGGACTAATAATGTGCTTGGGCGGTGTACCAGACAGTTGAGTTGAAAGTGGAGATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCTTGGCGAAGTTGAAAGGTAAAGGAAAAAGGAAGAGGAGGAGGAATTGAATGCATGTGAATGTTAATAATGTGAATGTTAATAATGTGAATGTTAATGTGAGCAGGGGTGGAGAAGGTGGAGAAGGTGGAGGTGGGCGCAGGCACCCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGAAGGGGTGGGCTGAAAGCCGACTTCTGGTCCGCCCAAAACGAGCTCCTTAATGCTTACGCCACCACTTACGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAGACCTTTACCTTTTTTCCCTTTTGCTTTTCGCTTGGAGAGCATACCCAGGTTCTGTTTTGCCTCTCTTTTCTAATTCATTTTTTGGTTGTAGGAGCATCACACCAAACACACTTGTATGGATTCTTAGTTTTATATCAACCTTCAACCCTCA

mRNA sequence

TGTGATCAAATGCTCTTTTCAGCGTAGCTTTGATTTGAGAGCAGAACAGGACGGAACAGGGGATCCTTGAATCTTCTCGTAATTTGGTTCTCTGTCTGTCGGTTTCTTTGGAAAAAAAAGGAAAGATTGGAGTTGACCCCACTTTTGTTCTGCTACAGCCTGTGTGTGTATATAAACCCTTCTGCCCTCTCCCCTGCTTCTCCTCTGCACTTCAGCTCTTGAACCCTCCATTTGTTTGCTCTGTTTCCTCCAGGCCATCCACTTCCATGGAGACAGTTGAGTTGAAAGTGGAGATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCTTGGCGAAGTTGAAAGGGGTGGAGAAGGTGGAGAAGGTGGAGGTGGGCGCAGGCACCCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGAAGGGGTGGGCTGAAAGCCGACTTCTGGTCCGCCCAAAACGAGCTCCTTAATGCTTACGCCACCACTTACGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAGACCTTTACCTTTTTTCCCTTTTGCTTTTCGCTTGGAGAGCATACCCAGGTTCTGTTTTGCCTCTCTTTTCTAATTCATTTTTTGGTTGTAGGAGCATCACACCAAACACACTTGTATGGATTCTTAGTTTTATATCAACCTTCAACCCTCA

Coding sequence (CDS)

ATGGAGACAGTTGAGTTGAAAGTGGAGATGGTCGGAATCCACGAGAAGAGGCTGAGAAAGAGCTTGGCGAAGTTGAAAGGGGTGGAGAAGGTGGAGAAGGTGGAGGTGGGCGCAGGCACCCAGAAGGTGGCGGTGAGGAGCTACATTCACCGGAACAAGATACTGAAAGCGATTAGAAGGGGTGGGCTGAAAGCCGACTTCTGGTCCGCCCAAAACGAGCTCCTTAATGCTTACGCCACCACTTACGGAGCCTTCAGATTCTGCCCCTACACATCCTTCTTCTTCTAG

Homology

[Close]

BLAST of CmoCh09G000280 vs. TrEMBL
Match: A0A0A0L1F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664450 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-30
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 10 MVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRRGGLKADFWS 69
          MVGIHEKRLRK L+KLKGVEKVE   V A +QKVAV SYIHRNKILKAIRR GLKADFWS
Sbjct: 1  MVGIHEKRLRKCLSKLKGVEKVE---VDANSQKVAVSSYIHRNKILKAIRRSGLKADFWS 60

Query: 70 AQNELLNAYATTYGAFRFCPYTSFF 95
          AQNELLNAYATTYGAFRF PY SFF
Sbjct: 61 AQNELLNAYATTYGAFRFSPYNSFF 82

[Close]

BLAST of CmoCh09G000280 vs. TrEMBL
Match: A0A067KKX5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08038 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          ME+VELKVEMVGIHEKRLRKSL+KLKG+EKVE   V A +QKV V  Y HRNKILKA+RR
Sbjct: 1  MESVELKVEMVGIHEKRLRKSLSKLKGIEKVE---VDANSQKVVVTGYAHRNKILKAVRR 60

Query: 61 GGLKADFWSAQNELLNAY--ATTYGAFRFCPYTSF 94
          GGLKADFWSAQNELLNAY  + TYG+ RF  +  F
Sbjct: 61 GGLKADFWSAQNELLNAYTSSATYGSLRFNNFNFF 92

[Close]

BLAST of CmoCh09G000280 vs. TrEMBL
Match: B9R8T1_RICCO (Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.7e-27
Identity = 70/95 (73.68%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          METVE KVEMVGIHEKRLRKSL+KL+G+EKVE   V A +QKV V  Y HRNKILKAIRR
Sbjct: 1  METVEFKVEMVGIHEKRLRKSLSKLRGIEKVE---VDANSQKVVVTGYAHRNKILKAIRR 60

Query: 61 GGLKADFWSAQNELLNAYA--TTYGAFRFCPYTSF 94
          GGLKADFWSAQNELLNAYA   +YG+ RF  +  F
Sbjct: 61 GGLKADFWSAQNELLNAYACSASYGSLRFNNFNFF 92

[Close]

BLAST of CmoCh09G000280 vs. TrEMBL
Match: A0A067GZU1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046545mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          +ETVELKVEMVGIHEKRLRK L+KL+G+EKVE   V A +QKV V  Y HRNKILKAIRR
Sbjct: 3  LETVELKVEMVGIHEKRLRKCLSKLRGIEKVE---VDANSQKVVVTGYAHRNKILKAIRR 62

Query: 61 GGLKADFWSAQNELLNAYAT-TYGAFRF 88
          GGLKADFWSAQNELL+AYA+ +YG  RF
Sbjct: 63 GGLKADFWSAQNELLSAYASASYGNLRF 87

[Close]

BLAST of CmoCh09G000280 vs. TrEMBL
Match: V4TG72_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003432mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          +ETVELKVEMVGIHEKRLRK L+KL+G+EKVE   V A +QKV V  Y HRNKILKAIRR
Sbjct: 3  LETVELKVEMVGIHEKRLRKCLSKLRGIEKVE---VDANSQKVVVTGYAHRNKILKAIRR 62

Query: 61 GGLKADFWSAQNELLNAYAT-TYGAFRF 88
          GGLKADFWSAQNELL+AYA+ +YG  RF
Sbjct: 63 GGLKADFWSAQNELLSAYASASYGNLRF 87

[Close]

BLAST of CmoCh09G000280 vs. TAIR10
Match: AT2G18196.1 (AT2G18196.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 1   METVELKVEMVGIH-EKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIR 60
           ++T++LKV M     E+ ++ ++ KL+GV+ VE   V    ++V V  Y+ R K+LKA+R
Sbjct: 45  LQTIDLKVRMCCSGCERVVKHAIYKLRGVDSVE---VNLEMERVTVVGYVERKKVLKAVR 104

Query: 61  RGGLKADFW 69
           R G +A+FW
Sbjct: 105 RAGKRAEFW 110

[Close]

BLAST of CmoCh09G000280 vs. TAIR10
Match: AT3G48970.1 (AT3G48970.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 3  TVELKVEMVGIH--EKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSY-IHRNKILKAIR 62
          TVE++V  +       +LRK+L KLKG   VE+VEV   TQKV  R Y +   K+LKA+R
Sbjct: 4  TVEIRVPNLDCEGCASKLRKTLLKLKG---VEEVEVEMETQKVTARGYRLEEKKVLKAVR 63

Query: 63 RGGLKADFW 69
          R G  A+ W
Sbjct: 64 RAGKAAELW 69

[Close]

BLAST of CmoCh09G000280 vs. TAIR10
Match: AT4G10465.1 (AT4G10465.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 1   METVELKVEMVGIHEKRL-RKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIR 60
           ++TVELKV M      R+ R +++KL+GV+ VE   V     +V V  Y+ RNK+LKA+R
Sbjct: 50  LQTVELKVRMCCTGCVRIVRNAISKLRGVDSVE---VDKELGRVRVVGYVDRNKVLKAVR 109

Query: 61  RGGLKADF 68
           R G +A+F
Sbjct: 110 RAGKRAEF 114

[Close]

BLAST of CmoCh09G000280 vs. NCBI nr
Match: gi|449455732|ref|XP_004145605.1| (PREDICTED: copper transport protein ATX1-like [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-34
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          METVELKVEMVGIHEKRLRK L+KLKGVEKVE   V A +QKVAV SYIHRNKILKAIRR
Sbjct: 1  METVELKVEMVGIHEKRLRKCLSKLKGVEKVE---VDANSQKVAVSSYIHRNKILKAIRR 60

Query: 61 GGLKADFWSAQNELLNAYATTYGAFRFCPYTSFF 95
           GLKADFWSAQNELLNAYATTYGAFRF PY SFF
Sbjct: 61 SGLKADFWSAQNELLNAYATTYGAFRFSPYNSFF 91

[Close]

BLAST of CmoCh09G000280 vs. NCBI nr
Match: gi|700200380|gb|KGN55538.1| (hypothetical protein Csa_4G664450 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 9.3e-30
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 10 MVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRRGGLKADFWS 69
          MVGIHEKRLRK L+KLKGVEKVE   V A +QKVAV SYIHRNKILKAIRR GLKADFWS
Sbjct: 1  MVGIHEKRLRKCLSKLKGVEKVE---VDANSQKVAVSSYIHRNKILKAIRRSGLKADFWS 60

Query: 70 AQNELLNAYATTYGAFRFCPYTSFF 95
          AQNELLNAYATTYGAFRF PY SFF
Sbjct: 61 AQNELLNAYATTYGAFRFSPYNSFF 82

[Close]

BLAST of CmoCh09G000280 vs. NCBI nr
Match: gi|1009133798|ref|XP_015884097.1| (PREDICTED: copper transport protein ATX1-like [Ziziphus jujuba])

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-27
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          ME+VELKVEMVGIHEKRLRK L+KLKG+EKVE   V A +QKV V  Y HRNKILKAIRR
Sbjct: 1  MESVELKVEMVGIHEKRLRKCLSKLKGIEKVE---VDANSQKVVVTGYAHRNKILKAIRR 60

Query: 61 GGLKADFWSAQNELLNAYAT-TYGAFRFCPYTSFF 95
          GGLKADFWSAQNELL+AYA+ +YG+ RF  + +FF
Sbjct: 61 GGLKADFWSAQNELLHAYASASYGSLRFSNFNNFF 92

[Close]

BLAST of CmoCh09G000280 vs. NCBI nr
Match: gi|802604429|ref|XP_012073581.1| (PREDICTED: copper transport protein ATX1-like [Jatropha curcas])

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-27
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          ME+VELKVEMVGIHEKRLRKSL+KLKG+EKVE   V A +QKV V  Y HRNKILKA+RR
Sbjct: 1  MESVELKVEMVGIHEKRLRKSLSKLKGIEKVE---VDANSQKVVVTGYAHRNKILKAVRR 60

Query: 61 GGLKADFWSAQNELLNAY--ATTYGAFRFCPYTSF 94
          GGLKADFWSAQNELLNAY  + TYG+ RF  +  F
Sbjct: 61 GGLKADFWSAQNELLNAYTSSATYGSLRFNNFNFF 92

[Close]

BLAST of CmoCh09G000280 vs. NCBI nr
Match: gi|255539318|ref|XP_002510724.1| (PREDICTED: copper transport protein ATX1 [Ricinus communis])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 70/95 (73.68%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1  METVELKVEMVGIHEKRLRKSLAKLKGVEKVEKVEVGAGTQKVAVRSYIHRNKILKAIRR 60
          METVE KVEMVGIHEKRLRKSL+KL+G+EKVE   V A +QKV V  Y HRNKILKAIRR
Sbjct: 1  METVEFKVEMVGIHEKRLRKSLSKLRGIEKVE---VDANSQKVVVTGYAHRNKILKAIRR 60

Query: 61 GGLKADFWSAQNELLNAYA--TTYGAFRFCPYTSF 94
          GGLKADFWSAQNELLNAYA   +YG+ RF  +  F
Sbjct: 61 GGLKADFWSAQNELLNAYACSASYGSLRFNNFNFF 92

The following BLAST results are available for this feature:

BLAST of CmoCh09G000280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G000280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1F1_CUCSA	6.5e-30	85.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664450 PE=4 SV=1	[more]
A0A067KKX5_JATCU	3.9e-27	73.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08038 PE=4 SV=1	[more]
B9R8T1_RICCO	8.7e-27	73.68	Copper transport protein atox1, putative OS=Ricinus communis GN=RCOM_1602020 PE=...	[more]
A0A067GZU1_CITSI	1.3e-25	76.14	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046545mg PE=4 SV=1	[more]
V4TG72_9ROSI	1.3e-25	76.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003432mg PE=4 SV=1	[more]

BLAST of CmoCh09G000280 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18196.1	1.5e-06	39.13	Heavy metal transport/detoxification superfamily protein	[more]
AT3G48970.1	2.0e-06	46.38	Heavy metal transport/detoxification superfamily protein	[more]
AT4G10465.1	4.5e-06	44.12	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of CmoCh09G000280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455732\|ref\|XP_004145605.1\|	2.1e-34	87.23	PREDICTED: copper transport protein ATX1-like [Cucumis sativus]	[more]
gi\|700200380\|gb\|KGN55538.1\|	9.3e-30	85.88	hypothetical protein Csa_4G664450 [Cucumis sativus]	[more]
gi\|1009133798\|ref\|XP_015884097.1\|	3.3e-27	73.68	PREDICTED: copper transport protein ATX1-like [Ziziphus jujuba]	[more]
gi\|802604429\|ref\|XP_012073581.1\|	5.6e-27	73.68	PREDICTED: copper transport protein ATX1-like [Jatropha curcas]	[more]
gi\|255539318\|ref\|XP_002510724.1\|	1.3e-26	73.68	PREDICTED: copper transport protein ATX1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000280.1	CmoCh09G000280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 24..73 score: 1.4
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 2..69 score: 6.
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..69 score: 2.4
None	No IPR available	PANTHER	PTHR22814:SF125	SUBFAMILY NOT NAMED	coord: 1..69 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000280	Cucsa.272400	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000280	Cla023474	Watermelon (97103) v1	cmowmB031
CmoCh09G000280	Csa4G664450	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000280	MELO3C017056	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000280	ClCG11G019020	Watermelon (Charleston Gray)	cmowcgB010
CmoCh09G000280	CSPI04G27230	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000280	Lsi04G024190	Bottle gourd (USVL1VR-Ls)	cmolsiB016
CmoCh09G000280	Cp4.1LG06g00110	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000280	Cp4.1LG02g08640	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000280	MELO3C017056.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000280	CsaV3_4G037620	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000280	Cla97C11G225120	Watermelon (97103) v2	cmowmbB010
CmoCh09G000280	Bhi09G002358	Wax gourd	cmowgoB0023
CmoCh09G000280	CsGy4G025530	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000280	Carg21349	Silver-seed gourd	carcmoB0484
CmoCh09G000280	Carg08607	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G000280	CmoCh01G020950	Cucurbita moschata (Rifu)	cmocmoB017

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000280	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000280	Cucurbita maxima (Rimu)	cmacmoB027