Cp4.1LG05g05710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g05710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionResponse to low sulfur protein, putative
LocationCp4.1LG05 : 3478313 .. 3478642 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

mRNA sequence

ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

Coding sequence (CDS)

ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

Protein sequence

MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQIRLQQPQLQSASV
Homology
[Close]
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match: A0A0A0KN32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-23
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK    +    ++++RRNEELEKEL+AS ERE +MR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKPGGVE---SVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match: A0A067DPV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 14 DLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQ 73
          ++ +R+RNE+LE+EL+ S+ERE  MR +LQRACERL++AE+AEERL SQLGELEAEA+ Q
Sbjct: 11 EVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQ 70

Query: 74 ARDYHHQIAALMNQLSQAQKLL 96
          ARDYH +I +LM+QLSQA +LL
Sbjct: 71 ARDYHARILSLMDQLSQANQLL 92

[Close]
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match: F6H7A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 5   KTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLG 64
           K   Q+   +  +RRRNEELE+EL+ S++RE+ MR++L+RA ERL+VAEEAEERL SQLG
Sbjct: 38  KAANQEQEEEKVLRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLG 97

Query: 65  ELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           ELEAEA+ QAR Y+++I +LMNQLSQA +L+Q
Sbjct: 98  ELEAEAVDQARQYNNRIVSLMNQLSQAHRLIQ 129

[Close]
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-18
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 17  IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
           ++RRN++LEKEL+ S+ERE+ MR+QLQ A ERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 77  YHHQIAALMNQLSQAQKLLQI 98
           YH +I +LM+QLS+AQ LL I
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHI 111

[Close]
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match: I1KB44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G139300 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 11  VGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEA 70
           V ++  +++RNEELEKEL+ S+ERE+ M+++LQ A ERL+VAEEAEERL SQLGELEAEA
Sbjct: 22  VVAESELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEA 81

Query: 71  LTQARDYHHQIAALMNQLSQAQKLL 96
           + QARDYH +I +LM+QLS+AQ LL
Sbjct: 82  VYQARDYHARIVSLMDQLSRAQSLL 106

[Close]
BLAST of Cp4.1LG05g05710 vs. TAIR10
Match: AT5G24660.1 (AT5G24660.1 response to low sulfur 2)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RR+N E+EK ++        M++++ +   R +VAEEAEERL SQL ELEAE+L QARD
Sbjct: 18 LRRKNGEMEKAVEE-------MKKEMLQLWRRTQVAEEAEERLCSQLAELEAESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  LMN+LS+
Sbjct: 78 YHSRIIFLMNELSR 84

[Close]
BLAST of Cp4.1LG05g05710 vs. TAIR10
Match: AT3G49570.1 (AT3G49570.1 response to low sulfur 3)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RRRN ELE+E++        M++++ +   R  VAEEAEERL SQL ELE E+L QARD
Sbjct: 18 LRRRNGELEREMEE-------MKKEMVQLWRRTVVAEEAEERLCSQLAELEVESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  LM+Q+S+
Sbjct: 78 YHSRIVFLMDQISR 84

[Close]
BLAST of Cp4.1LG05g05710 vs. TAIR10
Match: AT5G24655.1 (AT5G24655.1 response to low sulfur 4)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +R++N E+EK ++        MR+++ +   R +VAEEAEE L SQL ELEAE+L QARD
Sbjct: 18 LRQKNGEMEKAVEE-------MRKEMLQLWRRTQVAEEAEEHLCSQLAELEAESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  L NQLS+
Sbjct: 78 YHTRIIFLTNQLSR 84

[Close]
BLAST of Cp4.1LG05g05710 vs. TAIR10
Match: AT3G49580.1 (AT3G49580.1 response to low sulfur 1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RRRN EL +E+         M+ ++ +  +R  VAEEAEE+L SQL ELE E+L QARD
Sbjct: 18 LRRRNIELSREVAE-------MKTEMIKLWQRTVVAEEAEEQLCSQLAELEVESLEQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH ++  LM+Q+S+
Sbjct: 78 YHDRMLFLMDQISR 84

[Close]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match: gi|659074540|ref|XP_008437659.1| (PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 69/96 (71.88%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK+   +    +++ RRNEELEKEL+AS+ERE VMR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKSGGVE---SVSLGRRNEELEKELEASQERELVMREELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match: gi|778698698|ref|XP_011654590.1| (PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK    +    ++++RRNEELEKEL+AS ERE +MR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKPGGVE---SVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match: gi|985471068|ref|XP_015381147.1| (PREDICTED: uncharacterized protein LOC102628505 [Citrus sinensis])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 14 DLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQ 73
          ++ +R+RNE+LE+EL+ S+ERE  MR +LQRACERL++AE+AEERL SQLGELEAEA+ Q
Sbjct: 11 EVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQ 70

Query: 74 ARDYHHQIAALMNQLSQAQKLL 96
          ARDYH +I +LM+QLSQA +LL
Sbjct: 71 ARDYHARILSLMDQLSQANQLL 92

[Close]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match: gi|731424634|ref|XP_002269666.3| (PREDICTED: MAP7 domain-containing protein 1-like [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-18
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 5   KTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLG 64
           K   Q+   +  +RRRNEELE+EL+ S++RE+ MR++L+RA ERL+VAEEAEERL SQLG
Sbjct: 38  KAANQEQEEEKVLRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLG 97

Query: 65  ELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           ELEAEA+ QAR Y+++I +LMNQLSQA +L+Q
Sbjct: 98  ELEAEAVDQARQYNNRIVSLMNQLSQAHRLIQ 129

[Close]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match: gi|357464321|ref|XP_003602442.1| (response to low sulfur protein, putative [Medicago truncatula])

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-18
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 17  IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
           ++RRN++LEKEL+ S+ERE+ MR+QLQ A ERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 77  YHHQIAALMNQLSQAQKLLQI 98
           YH +I +LM+QLS+AQ LL I
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHI 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g05710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g05710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN32_CUCSA5.2e-2370.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1[more]
A0A067DPV7_CITSI2.2e-1867.07Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1[more]
F6H7A8_VITVI3.8e-1861.96Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=... [more]
G7J9Q1_MEDTR6.5e-1870.37Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 ... [more]
I1KB44_SOYBN1.9e-1765.88Uncharacterized protein OS=Glycine max GN=GLYMA_06G139300 PE=4 SV=1[more]
BLAST of Cp4.1LG05g05710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24660.17.6e-1051.35 response to low sulfur 2[more]
AT3G49570.11.0e-0951.35 response to low sulfur 3[more]
AT5G24655.11.1e-0850.00 response to low sulfur 4[more]
AT3G49580.11.2e-0747.30 response to low sulfur 1[more]
BLAST of Cp4.1LG05g05710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074540|ref|XP_008437659.1|5.7e-2371.88PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo][more]
gi|778698698|ref|XP_011654590.1|7.4e-2370.83PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus][more]
gi|985471068|ref|XP_015381147.1|3.2e-1867.07PREDICTED: uncharacterized protein LOC102628505 [Citrus sinensis][more]
gi|731424634|ref|XP_002269666.3|5.5e-1861.96PREDICTED: MAP7 domain-containing protein 1-like [Vitis vinifera][more]
gi|357464321|ref|XP_003602442.1|9.4e-1870.37response to low sulfur protein, putative [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0033554 cellular response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05710.1Cp4.1LG05g05710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 74..94
score: -coord: 14..69
scor
NoneNo IPR availablePANTHERPTHR34283FAMILY NOT NAMEDcoord: 17..96
score: 4.2
NoneNo IPR availablePANTHERPTHR34283:SF1SUBFAMILY NOT NAMEDcoord: 17..96
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g05710Cucsa.202460Cucumber (Gy14) v1cgycpeB0576
Cp4.1LG05g05710Csa5G139070Cucumber (Chinese Long) v2cpecuB730
Cp4.1LG05g05710MELO3C005916Melon (DHL92) v3.5.1cpemeB651
Cp4.1LG05g05710CSPI05G02830Wild cucumber (PI 183967)cpecpiB733
Cp4.1LG05g05710CsGy5G000110Cucumber (Gy14) v2cgybcpeB686
Cp4.1LG05g05710Carg13986Silver-seed gourdcarcpeB0718
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g05710Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g05710Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g05710Wild cucumber (PI 183967)cpecpiB741
Cp4.1LG05g05710Cucumber (Chinese Long) v2cpecuB740
Cp4.1LG05g05710Watermelon (Charleston Gray)cpewcgB635
Cp4.1LG05g05710Melon (DHL92) v3.6.1cpemedB779
Cp4.1LG05g05710Cucumber (Chinese Long) v3cpecucB0910
Cp4.1LG05g05710Cucumber (Chinese Long) v3cpecucB0919
Cp4.1LG05g05710Wax gourdcpewgoB0916