Cp4.1LG05g05710.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g05710.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Response to low sulfur protein, putative
Location	Cp4.1LG05 : 3478313 .. 3478642 (+)
Sequence length	330

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

mRNA sequence

ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

Coding sequence (CDS)

ATGGGGATTCTGAAAACGATCAAGCAAGACGTCGGATCCGATCTCGCCATCAGGCGGAGGAACGAGGAGCTCGAGAAGGAGCTTCAGGCGAGCCGCGAAAGAGAGCAGGTGATGCGGCAGCAGCTACAAAGAGCCTGCGAGAGGCTCAAGGTCGCCGAGGAGGCCGAAGAGAGGCTCTCCTCTCAACTCGGAGAACTCGAGGCGGAGGCGCTCACGCAGGCCCGCGATTACCACCACCAAATCGCGGCGTTGATGAACCAGCTCTCGCAGGCTCAGAAATTGCTGCAGATCCGACTGCAACAACCGCAACTCCAATCTGCCTCTGTCTAG

Protein sequence

MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQIRLQQPQLQSASV

Homology

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL
Match: A0A0A0KN32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-23
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK    +    ++++RRNEELEKEL+AS ERE +MR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKPGGVE---SVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL
Match: A0A067DPV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 14 DLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQ 73
          ++ +R+RNE+LE+EL+ S+ERE  MR +LQRACERL++AE+AEERL SQLGELEAEA+ Q
Sbjct: 11 EVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQ 70

Query: 74 ARDYHHQIAALMNQLSQAQKLL 96
          ARDYH +I +LM+QLSQA +LL
Sbjct: 71 ARDYHARILSLMDQLSQANQLL 92

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL
Match: F6H7A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 5   KTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLG 64
           K   Q+   +  +RRRNEELE+EL+ S++RE+ MR++L+RA ERL+VAEEAEERL SQLG
Sbjct: 38  KAANQEQEEEKVLRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLG 97

Query: 65  ELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           ELEAEA+ QAR Y+++I +LMNQLSQA +L+Q
Sbjct: 98  ELEAEAVDQARQYNNRIVSLMNQLSQAHRLIQ 129

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-18
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 17  IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
           ++RRN++LEKEL+ S+ERE+ MR+QLQ A ERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 77  YHHQIAALMNQLSQAQKLLQI 98
           YH +I +LM+QLS+AQ LL I
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHI 111

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL
Match: I1KB44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G139300 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 56/85 (65.88%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 11  VGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEA 70
           V ++  +++RNEELEKEL+ S+ERE+ M+++LQ A ERL+VAEEAEERL SQLGELEAEA
Sbjct: 22  VVAESELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEA 81

Query: 71  LTQARDYHHQIAALMNQLSQAQKLL 96
           + QARDYH +I +LM+QLS+AQ LL
Sbjct: 82  VYQARDYHARIVSLMDQLSRAQSLL 106

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TAIR10
Match: AT5G24660.1 (AT5G24660.1 response to low sulfur 2)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RR+N E+EK ++        M++++ +   R +VAEEAEERL SQL ELEAE+L QARD
Sbjct: 18 LRRKNGEMEKAVEE-------MKKEMLQLWRRTQVAEEAEERLCSQLAELEAESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  LMN+LS+
Sbjct: 78 YHSRIIFLMNELSR 84

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TAIR10
Match: AT3G49570.1 (AT3G49570.1 response to low sulfur 3)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RRRN ELE+E++        M++++ +   R  VAEEAEERL SQL ELE E+L QARD
Sbjct: 18 LRRRNGELEREMEE-------MKKEMVQLWRRTVVAEEAEERLCSQLAELEVESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  LM+Q+S+
Sbjct: 78 YHSRIVFLMDQISR 84

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TAIR10
Match: AT5G24655.1 (AT5G24655.1 response to low sulfur 4)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +R++N E+EK ++        MR+++ +   R +VAEEAEE L SQL ELEAE+L QARD
Sbjct: 18 LRQKNGEMEKAVEE-------MRKEMLQLWRRTQVAEEAEEHLCSQLAELEAESLDQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH +I  L NQLS+
Sbjct: 78 YHTRIIFLTNQLSR 84

[Close]

BLAST of Cp4.1LG05g05710.1 vs. TAIR10
Match: AT3G49580.1 (AT3G49580.1 response to low sulfur 1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 17 IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
          +RRRN EL +E+         M+ ++ +  +R  VAEEAEE+L SQL ELE E+L QARD
Sbjct: 18 LRRRNIELSREVAE-------MKTEMIKLWQRTVVAEEAEEQLCSQLAELEVESLEQARD 77

Query: 77 YHHQIAALMNQLSQ 91
          YH ++  LM+Q+S+
Sbjct: 78 YHDRMLFLMDQISR 84

[Close]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr
Match: gi|659074540|ref|XP_008437659.1| (PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 69/96 (71.88%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK+   +    +++ RRNEELEKEL+AS+ERE VMR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKSGGVE---SVSLGRRNEELEKELEASQERELVMREELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr
Match: gi|778698698|ref|XP_011654590.1| (PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 1  MGILKTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLS 60
          MG+LK    +    ++++RRNEELEKEL+AS ERE +MR++L+R CERLKVAEEAEERLS
Sbjct: 1  MGVLKPGGVE---SVSLKRRNEELEKELEASHERELIMRKELRRVCERLKVAEEAEERLS 60

Query: 61 SQLGELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           QLGELEAEALTQARDYH QI +LMNQLS A KLLQ
Sbjct: 61 LQLGELEAEALTQARDYHQQITSLMNQLSHAHKLLQ 93

[Close]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr
Match: gi|985471068|ref|XP_015381147.1| (PREDICTED: uncharacterized protein LOC102628505 [Citrus sinensis])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 14 DLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQ 73
          ++ +R+RNE+LE+EL+ S+ERE  MR +LQRACERL++AE+AEERL SQLGELEAEA+ Q
Sbjct: 11 EVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQ 70

Query: 74 ARDYHHQIAALMNQLSQAQKLL 96
          ARDYH +I +LM+QLSQA +LL
Sbjct: 71 ARDYHARILSLMDQLSQANQLL 92

[Close]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr
Match: gi|731424634|ref|XP_002269666.3| (PREDICTED: MAP7 domain-containing protein 1-like [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-18
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 5   KTIKQDVGSDLAIRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLG 64
           K   Q+   +  +RRRNEELE+EL+ S++RE+ MR++L+RA ERL+VAEEAEERL SQLG
Sbjct: 38  KAANQEQEEEKVLRRRNEELEEELKKSQDREERMRRELERARERLRVAEEAEERLCSQLG 97

Query: 65  ELEAEALTQARDYHHQIAALMNQLSQAQKLLQ 97
           ELEAEA+ QAR Y+++I +LMNQLSQA +L+Q
Sbjct: 98  ELEAEAVDQARQYNNRIVSLMNQLSQAHRLIQ 129

[Close]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr
Match: gi|357464321|ref|XP_003602442.1| (response to low sulfur protein, putative [Medicago truncatula])

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-18
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 17  IRRRNEELEKELQASREREQVMRQQLQRACERLKVAEEAEERLSSQLGELEAEALTQARD 76
           ++RRN++LEKEL+ S+ERE+ MR+QLQ A ERL+VAEEAEERL SQLGELEAEA+ QARD
Sbjct: 31  LKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARD 90

Query: 77  YHHQIAALMNQLSQAQKLLQI 98
           YH +I +LM+QLS+AQ LL I
Sbjct: 91  YHDRIVSLMDQLSRAQSLLHI 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g05710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN32_CUCSA	5.2e-23	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139070 PE=4 SV=1	[more]
A0A067DPV7_CITSI	2.2e-18	67.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1	[more]
F6H7A8_VITVI	3.8e-18	61.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00600 PE=4 SV=...	[more]
G7J9Q1_MEDTR	6.5e-18	70.37	Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 ...	[more]
I1KB44_SOYBN	1.9e-17	65.88	Uncharacterized protein OS=Glycine max GN=GLYMA_06G139300 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g05710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24660.1	7.6e-10	51.35	response to low sulfur 2	[more]
AT3G49570.1	1.0e-09	51.35	response to low sulfur 3	[more]
AT5G24655.1	1.1e-08	50.00	response to low sulfur 4	[more]
AT3G49580.1	1.2e-07	47.30	response to low sulfur 1	[more]

BLAST of Cp4.1LG05g05710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074540\|ref\|XP_008437659.1\|	5.7e-23	71.88	PREDICTED: uncharacterized protein LOC103482998 [Cucumis melo]	[more]
gi\|778698698\|ref\|XP_011654590.1\|	7.4e-23	70.83	PREDICTED: uncharacterized protein LOC105435419 [Cucumis sativus]	[more]
gi\|985471068\|ref\|XP_015381147.1\|	3.2e-18	67.07	PREDICTED: uncharacterized protein LOC102628505 [Citrus sinensis]	[more]
gi\|731424634\|ref\|XP_002269666.3\|	5.5e-18	61.96	PREDICTED: MAP7 domain-containing protein 1-like [Vitis vinifera]	[more]
gi\|357464321\|ref\|XP_003602442.1\|	9.4e-18	70.37	response to low sulfur protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g05710	Cp4.1LG05g05710	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05710.1:cds:001	Cp4.1LG05g05710.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05710.1	Cp4.1LG05g05710.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 74..94 score: -coord: 14..69 scor
None	No IPR available	PANTHER	PTHR34283	FAMILY NOT NAMED	coord: 17..96 score: 4.2
None	No IPR available	PANTHER	PTHR34283:SF1	SUBFAMILY NOT NAMED	coord: 17..96 score: 4.2