Cp4.1LG05g03420 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g03420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Tubulin beta chain
Location	Cp4.1LG05 : 1846847 .. 1848603 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACATTCCCACATGAAATTATTAATTCAATCTTCTTCCATGTCTTTCAACCTTCACTTTCACTATCCTTTTACGCCATTTCCCCCTCAACATAAAGACTAGAAACTCCATTTCACTTCATCCTGAAAACCCCCTTATATATCCCTCCCTCCCTCCTTCCCTCTGCCTGCAAACCCTCAAACCATCTGCCATTTCCCTCTTGCTTTCCTCTGCTTTCAAAAATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGTATGAATATGAGATGACTATGAGATCTGTTCTTCCCATATTCAATACATAAGATGTTATTTCTACTCTAATAAATATTGAGAGTAATCAAAATCCTGATCTTGGTTTGAATGTGGAACAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAGTTGTAAGTTTCTCTCCCAGTATCACATGTTGTAGCAATCAATATACTTGAGATGCAATAGCTCTCTTATTCCGATTTTTGTGTGCTTTAGTTGGTGATCTCAACCACTTGATTTCCACAACCATGAGTGGAGTTACATGCTGCCTTCGCTTCCCCGGCCAGCTCAATTCCGACCTCCGAAAGCTCGCTGTGAACCTCATCCCTTTCCCACGACTCCACTTCTTCATGGTTGGTTTTGCACCCTTGACTGCTCGTGGCTCGCAGCAGTACCGTGCGCTCACCATCCCTGAGCTCACACAGCAAATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCTCGCCATGGTCGATACCTAACTGCCTCGGCTTTGTTCCGTGGCAAGATGAGTACCAAGGAAGTCGACGAACAGATGATTAACGTACAGAACAAGAACTCATCCTACTTTGTTGAGTGGATTCCAAACAATGTTAAGTCAAGTGTTTGTGACATTCCACCAACTGGGTTGTCGATGTCTTCGACATTCATGGGAAACTCAACCTCAATACAAGAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

mRNA sequence

CATACATTCCCACATGAAATTATTAATTCAATCTTCTTCCATGTCTTTCAACCTTCACTTTCACTATCCTTTTACGCCATTTCCCCCTCAACATAAAGACTAGAAACTCCATTTCACTTCATCCTGAAAACCCCCTTATATATCCCTCCCTCCCTCCTTCCCTCTGCCTGCAAACCCTCAAACCATCTGCCATTTCCCTCTTGCTTTCCTCTGCTTTCAAAAATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

Coding sequence (CDS)

ATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAAATCGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGCATAGATCCCACTGGAAACTACACCGGAACTAGTAACCTTCAACTCGAAAGAGTTAATGTTTACTACAACGAAGCGAGCGGCGGCCGGTACGTTCCGAGGGCTGTTCTGGTTGATCTTGAACCAGGAACCATGGACAGCCTCAGAACAGGTCCTTATGGGAATATATTCAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACCGAAGGAGCTGAATTAGTTGATTCTGTTCTTGATGTGGTCAGAAAAGAAGCTGAGAATTGTGACTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTGTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCACCAGTTGGTGGAGAATGCTGATGAGTGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGAACCCTCAAGCTCACCAATCCCAAGATGTTTCGACGAGTCTCCGAGCAATTCACGGTCATGTTCAGGAGGAAGGCGTTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTTACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTAGCAGAGGATGAGGAGGAAGATGATATGCTGGAGCACGAA

Protein sequence

MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPKMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEEDDMLEHE

Homology

[Close]

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.1e-124
Identity = 208/220 (94.55%), Postives = 215/220 (97.73%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTGTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.1e-124
Identity = 208/220 (94.55%), Postives = 215/220 (97.73%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTGTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.1e-124
Identity = 208/220 (94.55%), Postives = 215/220 (97.73%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTGTS+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.0e-123
Identity = 207/220 (94.09%), Postives = 214/220 (97.27%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.0e-123
Identity = 207/220 (94.09%), Postives = 214/220 (97.27%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVCDEHGIDPTG YTG S+LQLERVNVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. TrEMBL
Match: A0A0B0P4U1_GOSAR (Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.0e-147
Identity = 253/290 (87.24%), Postives = 271/290 (93.45%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTG--TSNLQLERVNVYYNEASGGR 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHG+DPTG Y G  +S++QLER++VYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLD 120
           YVPRAVL+DLEPGTMDS+R+GP G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQF 240
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQF
Sbjct: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQF 240

Query: 241 TVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEE 281
           T MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA  EDEEE
Sbjct: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEDEEE 290

[Close]

BLAST of Cp4.1LG05g03420 vs. TrEMBL
Match: A0A103Y6G5_CYNCS (Beta-tubulin (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018295 PE=3 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 3.9e-147
Identity = 257/302 (85.10%), Postives = 274/302 (90.73%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVC+EHGIDPTG Y G+S++QLERVNVYYNEAS GR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCEEHGIDPTGKYIGSSDVQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMD +RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDGVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-----------------KMF 240
           EPYNATLSVHQLVENADECMVLDNEALYDICF+TLKLTNP                 +MF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFKTLKLTNPSWLSMASTFIGNSTSIQEMF 240

Query: 241 RRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED---EEE 283
           RRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA AE+   EEE
Sbjct: 241 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEYGYEEE 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TrEMBL
Match: A0A103XG02_CYNCS (Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007908 PE=3 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 8.8e-147
Identity = 258/299 (86.29%), Postives = 272/299 (90.97%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGID TG Y G  +LQLERVNVYYNEAS GR+V
Sbjct: 45  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDQDLQLERVNVYYNEASCGRFV 104

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRA+L+DLEPGTMDS+R+GPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 105 PRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 164

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 165 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 224

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQFTV 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQFT 
Sbjct: 225 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQFTA 284

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED----EEEDDMLEHE 288
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++    EEE++  E E
Sbjct: 285 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEEGYEEE 343

[Close]

BLAST of Cp4.1LG05g03420 vs. TrEMBL
Match: A0A103XGS7_CYNCS (Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007578 PE=3 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 1.5e-146
Identity = 259/311 (83.28%), Postives = 275/311 (88.42%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTS-NLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIGAKFWEV+CDEHGID TG Y GT+ +LQLER+NVY+NEASGGRY
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGRYNGTTADLQLERINVYFNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GP G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPNGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCD LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP------------------- 240
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+NP                   
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSNPSCKYPSFINYRGVSPITKA 240

Query: 241 ----KMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAE 288
               KMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA AE
Sbjct: 241 GSNKKMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAE 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TrEMBL
Match: A0A103Y6Z7_CYNCS (Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_018049 PE=3 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 1.5e-146
Identity = 257/303 (84.82%), Postives = 268/303 (88.45%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGID TG YTG S LQLER+NVYYNEASGGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDVTGKYTGDSELQLERINVYYNEASGGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+G YG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKFSNDNFLMASTFIGNST 240

Query: 241 ---KMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED 281
              +MFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++
Sbjct: 241 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 300

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR10
Match: AT5G12250.1 (AT5G12250.1 beta-6 tubulin)

HSP 1 Score: 440.3 bits (1131), Expect = 9.3e-124
Identity = 204/220 (92.73%), Postives = 213/220 (96.82%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVCDEHGIDPTG Y G S+LQLERVNVYYNEAS GRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRA+L+DLEPGTMDS+RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR10
Match: AT5G62700.1 (AT5G62700.1 tubulin beta chain 3)

HSP 1 Score: 437.2 bits (1123), Expect = 7.9e-123
Identity = 204/220 (92.73%), Postives = 212/220 (96.36%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGIDPTG YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+GPYG  FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR10
Match: AT5G62690.1 (AT5G62690.1 tubulin beta chain 2)

HSP 1 Score: 437.2 bits (1123), Expect = 7.9e-123
Identity = 204/220 (92.73%), Postives = 212/220 (96.36%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGIDPTG YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+GPYG  FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP 220

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR10
Match: AT1G75780.1 (AT1G75780.1 tubulin beta-1 chain)

HSP 1 Score: 434.9 bits (1117), Expect = 3.9e-122
Identity = 201/221 (90.95%), Postives = 214/221 (96.83%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTS-NLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHG+DPTG Y G S +LQLER+NVYYNEASGGRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTP 221

[Close]

BLAST of Cp4.1LG05g03420 vs. TAIR10
Match: AT1G20010.1 (AT1G20010.1 tubulin beta-5 chain)

HSP 1 Score: 432.6 bits (1111), Expect = 1.9e-121
Identity = 200/221 (90.50%), Postives = 215/221 (97.29%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTG-TSNLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHGID TG Y+G T++LQLER+NVYYNEASGGRY
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GP+G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP 221
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTP 221

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: gi|728842300|gb|KHG21743.1| (Tubulin beta-6 chain [Gossypium arboreum])

HSP 1 Score: 530.8 bits (1366), Expect = 1.5e-147
Identity = 253/290 (87.24%), Postives = 271/290 (93.45%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTG--TSNLQLERVNVYYNEASGGR 60
           MREILH+Q GQCGNQIG+KFWEV+CDEHG+DPTG Y G  +S++QLER++VYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLD 120
           YVPRAVL+DLEPGTMDS+R+GP G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQF 240
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQF
Sbjct: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQF 240

Query: 241 TVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEE 281
           T MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA  EDEEE
Sbjct: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEDEEE 290

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: gi|976918208|gb|KVI03404.1| (beta-tubulin, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 528.9 bits (1361), Expect = 5.6e-147
Identity = 257/302 (85.10%), Postives = 274/302 (90.73%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIG+KFWEVVC+EHGIDPTG Y G+S++QLERVNVYYNEAS GR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCEEHGIDPTGKYIGSSDVQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMD +RTGPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDGVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-----------------KMF 240
           EPYNATLSVHQLVENADECMVLDNEALYDICF+TLKLTNP                 +MF
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFKTLKLTNPSWLSMASTFIGNSTSIQEMF 240

Query: 241 RRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED---EEE 283
           RRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA AE+   EEE
Sbjct: 241 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEYGYEEE 300

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: gi|976902100|gb|KVH90058.1| (beta-tubulin [Cynara cardunculus var. scolymus])

HSP 1 Score: 527.7 bits (1358), Expect = 1.3e-146
Identity = 258/299 (86.29%), Postives = 272/299 (90.97%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGID TG Y G  +LQLERVNVYYNEAS GR+V
Sbjct: 45  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDQDLQLERVNVYYNEASCGRFV 104

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRA+L+DLEPGTMDS+R+GPYG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 105 PRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 164

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 165 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 224

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP--------KMFRRVSEQFTV 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P        +MFRRVSEQFT 
Sbjct: 225 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQFTA 284

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED----EEEDDMLEHE 288
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++    EEE++  E E
Sbjct: 285 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEEGYEEE 343

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: gi|976902464|gb|KVH90407.1| (beta-tubulin [Cynara cardunculus var. scolymus])

HSP 1 Score: 526.9 bits (1356), Expect = 2.1e-146
Identity = 259/311 (83.28%), Postives = 275/311 (88.42%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTS-NLQLERVNVYYNEASGGRY 60
           MREILH+Q GQCGNQIGAKFWEV+CDEHGID TG Y GT+ +LQLER+NVY+NEASGGRY
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGRYNGTTADLQLERINVYFNEASGGRY 60

Query: 61  VPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAVL+DLEPGTMDS+R+GP G IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPNGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
           VRKEAENCD LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP------------------- 240
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+NP                   
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSNPSCKYPSFINYRGVSPITKA 240

Query: 241 ----KMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAE 288
               KMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA AE
Sbjct: 241 GSNKKMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAE 300

[Close]

BLAST of Cp4.1LG05g03420 vs. NCBI nr
Match: gi|976918491|gb|KVI03667.1| (beta-tubulin [Cynara cardunculus var. scolymus])

HSP 1 Score: 526.9 bits (1356), Expect = 2.1e-146
Identity = 257/303 (84.82%), Postives = 268/303 (88.45%), Query Frame = 1


Query: 1   MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGTSNLQLERVNVYYNEASGGRYV 60
           MREILH+Q GQCGNQIGAKFWEVVC EHGID TG YTG S LQLER+NVYYNEASGGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDVTGKYTGDSELQLERINVYYNEASGGRFV 60

Query: 61  PRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVV 120
           PRAVL+DLEPGTMDSLR+G YG IFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNP-------------------- 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT P                    
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKFSNDNFLMASTFIGNST 240

Query: 241 ---KMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAED 281
              +MFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA A++
Sbjct: 241 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBB2_ELEIN	5.1e-124	94.55	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1	[more]
TBB_HORVU	5.1e-124	94.55	Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1	[more]
TBB2_WHEAT	5.1e-124	94.55	Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1	[more]
TBB6_MAIZE	2.0e-123	94.09	Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1	[more]
TBB4_ORYSJ	2.0e-123	94.09	Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g03420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0P4U1_GOSAR	1.0e-147	87.24	Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1	[more]
A0A103Y6G5_CYNCS	3.9e-147	85.10	Beta-tubulin (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018295 PE=3 ...	[more]
A0A103XG02_CYNCS	8.8e-147	86.29	Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007908 PE=3 SV=1	[more]
A0A103XGS7_CYNCS	1.5e-146	83.28	Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007578 PE=3 SV=1	[more]
A0A103Y6Z7_CYNCS	1.5e-146	84.82	Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_018049 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g03420 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12250.1	9.3e-124	92.73	beta-6 tubulin	[more]
AT5G62700.1	7.9e-123	92.73	tubulin beta chain 3	[more]
AT5G62690.1	7.9e-123	92.73	tubulin beta chain 2	[more]
AT1G75780.1	3.9e-122	90.95	tubulin beta-1 chain	[more]
AT1G20010.1	1.9e-121	90.50	tubulin beta-5 chain	[more]

BLAST of Cp4.1LG05g03420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728842300\|gb\|KHG21743.1\|	1.5e-147	87.24	Tubulin beta-6 chain [Gossypium arboreum]	[more]
gi\|976918208\|gb\|KVI03404.1\|	5.6e-147	85.10	beta-tubulin, partial [Cynara cardunculus var. scolymus]	[more]
gi\|976902100\|gb\|KVH90058.1\|	1.3e-146	86.29	beta-tubulin [Cynara cardunculus var. scolymus]	[more]
gi\|976902464\|gb\|KVH90407.1\|	2.1e-146	83.28	beta-tubulin [Cynara cardunculus var. scolymus]	[more]
gi\|976918491\|gb\|KVI03667.1\|	2.1e-146	84.82	beta-tubulin [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0005200	structural constituent of cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **INTERPRO**
Term	Definition
IPR023123	Tubulin_C
IPR017975	Tubulin_CS
IPR013838	Beta-tubulin_BS
IPR008280	Tub_FtsZ_C
IPR003008	Tubulin_FtsZ_GTPase
IPR002453	Beta_tubulin
IPR000217	Tubulin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0051258	protein polymerization
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03420.1	Cp4.1LG05g03420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 1.5E-91coord: 151..172 score: 1.5E-91coord: 106..130 score: 1.5E-91coord: 132..150 score: 1.5E-91coord: 176..189 score: 1.5E-91coord: 10..30 score: 1.5E-91coord: 51..70 score: 1.5E-91coord: 190..210 score: 1.5
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 5..287 score: 5.3E
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 108..126 score: 3.6E-37coord: 212..224 score: 3.6E-37coord: 152..164 score: 3.6E-37coord: 41..58 score: 3.6E-37coord: 88..99 score: 3.6
IPR003008	Tubulin/FtsZ, GTPase domain	GENE3D	G3DSA:3.40.50.1440		coord: 1..221 score: 3.5E
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..211 score: 7.9
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 47..238 score: 7.8
IPR003008	Tubulin/FtsZ, GTPase domain	unknown	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..221 score: 7.59
IPR008280	Tubulin/FtsZ, C-terminal	unknown	SSF55307	Tubulin C-terminal domain-like	coord: 221..271 score: 2.11
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4 scor
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 140..146 scor
IPR023123	Tubulin, C-terminal	GENE3D	G3DSA:1.10.287.600		coord: 222..273 score: 2.3
None	No IPR available	unknown	Coil	Coil	coord: 253..287 scor
None	No IPR available	PANTHER	PTHR11588:SF124	SUBFAMILY NOT NAMED	coord: 5..287 score: 5.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g03420	Cucsa.303140	Cucumber (Gy14) v1	cgycpeB0792
Cp4.1LG05g03420	CmaCh02G014550	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g03420	CmoCh02G014900	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g03420	Cla011450	Watermelon (97103) v1	cpewmB717
Cp4.1LG05g03420	Csa5G153160	Cucumber (Chinese Long) v2	cpecuB736
Cp4.1LG05g03420	MELO3C005673	Melon (DHL92) v3.5.1	cpemeB647
Cp4.1LG05g03420	ClCG01G002750	Watermelon (Charleston Gray)	cpewcgB639
Cp4.1LG05g03420	CSPI05G05440	Wild cucumber (PI 183967)	cpecpiB738
Cp4.1LG05g03420	Lsi09G002620	Bottle gourd (USVL1VR-Ls)	cpelsiB582
Cp4.1LG05g03420	MELO3C005673.2	Melon (DHL92) v3.6.1	cpemedB774
Cp4.1LG05g03420	CsaV3_5G002840	Cucumber (Chinese Long) v3	cpecucB0915
Cp4.1LG05g03420	Bhi12G000243	Wax gourd	cpewgoB0910
Cp4.1LG05g03420	CsGy5G002690	Cucumber (Gy14) v2	cgybcpeB691
Cp4.1LG05g03420	Carg02527	Silver-seed gourd	carcpeB1282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g03420	Cucurbita moschata (Rifu)	cmocpeB292
Cp4.1LG05g03420	Watermelon (Charleston Gray)	cpewcgB680
Cp4.1LG05g03420	Cucumber (Gy14) v2	cgybcpeB427
Cp4.1LG05g03420	Melon (DHL92) v3.6.1	cpemedB831
Cp4.1LG05g03420	Silver-seed gourd	carcpeB1298
Cp4.1LG05g03420	Cucumber (Chinese Long) v3	cpecucB0896
Cp4.1LG05g03420	Wax gourd	cpewgoB0929
Cp4.1LG05g03420	Cucurbita pepo (Zucchini)	cpecpeB226
Cp4.1LG05g03420	Cucurbita maxima (Rimu)	cmacpeB329