Cp4.1LG05g03100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g03100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDet1 complexing ubiquitin ligase
LocationCp4.1LG05 : 2004385 .. 2006862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATAAACACAAATTAAGGCGCTGCGACTCCACCGGTTGTGATTCCAATGGCGCTGTGACTCCGAAATGACTCGCTTCTCTTCCTCTTCCCTCTCTTTCTAACATAAATTCAGCGGCATTTTGATGGGGTCTATGCTCGGTGACCTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTGTAAGTTCTCATTAGTGGCGGAATCACACACCCTTTGTTCTGTTCTTGTAATTGATTCATGTAATCGCTGAACCCTTTCGTTTGTTTTATTGATCCTTGGTGTTTTCCTCGTATTTGTGATGGCTGTTTATTTCCTTTGAGTGGGGAGTTGCTTGAGTTGTTGGTTCGTCGAGTTAGGGTGTGAATTGTGAGGAAATTGAACCTCCTCGTGATCTTCTTTGCTCTGTTACTGTTTAGGCTCTGCTAATTTTTGGTATTACTGATCTGTTTTCTGGGGTTGTGTTGTTTTATCGTTTTAGAATCTGGAAATTCTTGAATTCTTGGAATTTTGATATGTATGTTCTTAATTTAGCTAAAGTTTGTAGATGTAAAGTCAATGATGTTCTTCTTTTAGTTTTAACTCTTCTTTTCTCTCTATATTGGTATGCTAATCTTGTAAAGTCAGTCCTGTGAAAGAAATGATTCCACTAACTCAGCCACGAAGAATTAGCTGTAATGTGATATACTAAGGGGACAAATCTGCAAGGAACAATTACTGGGTTACTGACCTCCAGAGAAAAGAAACAATTTATTTCTCATGTGTAGGTCAATCTTCAAGTTTCTAACGATTCTGAAGCCCAACCATTCCAATCTTTGGACTAGGAGCAAGTTACCTCTTCCTTTTGAGTATACAAACGGTGAGATACCACATCGGTTGGGAAGGAGAACGAAACATTGTTTATAAGGATGTGAAAACCTCTTCCTAGCAGGCGCATTTTAGAAACCTTGAGGGAAAACCCAAAAGGAAACCCCAAAGAGGACAATATTTGCTAGCGGTGGCAAAAAGTTGCGTCATGTTCGTGGCTTCTCTTATTTCTTGAGTTATACAGTTCACTTTCAAATGTTTATGCTTAAAAACTCCCAATCAAATGCTAAGATAATGCAATAGGATCAAAAACTCTAAGAAACTTAGTTAGAGGCTGTTGATTGAGAAGGTTCCAACACCATCTTAACTAAAGCTACCAATTGTTGTACCCTTCTCTGAAGGGAAATCCTTGTGGATGTTAGGCAGGTGGTGTGAGATTACACATCGATTTAAGAGGGGAACGAACTATTCCTTATAATGGTATGGAAACCTCTCCCTAGTATATGCATTTTAAAACCTTGAGGAGAAACCCAGAATGAAAAGTCCAAAGATGACAATATTTGTTAGCAGTGGGTTTGAGCTGTTACAAATGGAATCAGAGCCAAACACTGAGCGGTGTGCTAGTGAGGACGCTGGTCCCCAAGGGAGTAGATTGTGAGATCCCACATCGGTTGGAGAAGGGAACGAAGCATTCCTTACAATGATGTGAAAATCTCTCCCTAATAGACGCGTTTTAAAATTTTAAGAGGAAATCTTAAGCGGTTTAAATTCTGTACAATTTTTACTAGGGGAGTTGCCTGCTGCAAGAATTAAAGCAGAACAACATATTTTTACTCTGCTAAGTCTGTTTTATTATTATTATGTAGAAGATGATTCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCGCCACTGGATCAGGGTAAGCAAGAAAAACCGTTCCCTCGTTACAATGCCGAGACTATGATTTTACCAACCATACCGATATCTTTGTATCTTGATCGGCAAACGGTACCTTAGTCGGTAGTTTTCCACTGTTAGCTTTAGTTTCCATCTCCTCAACTTGGTTTTTGTTACCATGTCACTGATTTCTGCTGCAGTTATAAATACTGAGCCAAAAAATATACTTCTACGACACATTTATCAGCATACAGAACAAAAGGTTAGTAAAGAATCTGTATGCTTTGATATGAAATACAATCTATACATGGGTGAGCTTGTGAGAATACACACACATTCCTTATGGACTTTCCCTGGTTTTTCTAATGGCAGTCGAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTGCCAACACTTCAAATTGAGCCTTGGGAGGGCAGTTTCTTCCAACAATGTAAAATCTGTTCTATGTTGTGAAATATGTGTTCTGTATAATGAGAGCAAATTGCCTGCTCAGTGGCCGCCGGAGAAGAAACAGCTCGGCCCGACATTTAAATGCTGTATATAGATTTTACTCCTTGTAAGAATGTGCTAAACTCAGCCACACCAAATTGTTCTCAAAACATTAACTCAGTTGAAGAATTGTAACTAATATGAGTGTGCTTCCAAACAAGAACAGTTCACATCTTAGCATTTTGGCCTT

mRNA sequence

TAAATAAACACAAATTAAGGCGCTGCGACTCCACCGGTTGTGATTCCAATGGCGCTGTGACTCCGAAATGACTCGCTTCTCTTCCTCTTCCCTCTCTTTCTAACATAAATTCAGCGGCATTTTGATGGGGTCTATGCTCGGTGACCTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCGCCACTGGATCAGGTTATAAATACTGAGCCAAAAAATATACTTCTACGACACATTTATCAGCATACAGAACAAAAGTCGAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTGCCAACACTTCAAATTGAGCCTTGGGAGGGCAGTTTCTTCCAACAATGTAAAATCTGTTCTATGTTGTGAAATATGTGTTCTGTATAATGAGAGCAAATTGCCTGCTCAGTGGCCGCCGGAGAAGAAACAGCTCGGCCCGACATTTAAATGCTGTATATAGATTTTACTCCTTGTAAGAATGTGCTAAACTCAGCCACACCAAATTGTTCTCAAAACATTAACTCAGTTGAAGAATTGTAACTAATATGAGTGTGCTTCCAAACAAGAACAGTTCACATCTTAGCATTTTGGCCTT

Coding sequence (CDS)

ATGGGGTCTATGCTCGGTGACCTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCGCCACTGGATCAGGTTATAAATACTGAGCCAAAAAATATACTTCTACGACACATTTATCAGCATACAGAACAAAAGTCGAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTGCCAACACTTCAAATTGA

Protein sequence

MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLRHIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTSN
Homology
[Close]
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match: A0A0A0KKG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152230 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-45
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPP DQVINTE KNIL+R
Sbjct: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTSN 99
          HIYQHTE+KSRTKRPA EHPMPEHGSKQPRAST NTSN
Sbjct: 61 HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRASTTNTSN 98

[Close]
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match: D7TV65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00390 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.4e-33
Identity = 73/95 (76.84%), Postives = 78/95 (82.11%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGS LGD PS+DPHNFSQLRPSDPS PSKMIPATYHPTH RTLPP DQVI+TE KNILLR
Sbjct: 1  MGSTLGDWPSFDPHNFSQLRPSDPSNPSKMIPATYHPTHDRTLPPPDQVISTETKNILLR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTAN 96
          H YQ  E+K R KR A EH  PEHG KQPRAS ++
Sbjct: 61 HFYQRAEEKLRPKRAASEHLTPEHGCKQPRASASD 95

[Close]
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match: A0A0D2QQB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G085700 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGSMLGDLPS+DPHNFSQLRPSDPS PSK++P TY PTHSRT PP DQVI TE KNIL+R
Sbjct: 2  MGSMLGDLPSFDPHNFSQLRPSDPSNPSKVVPTTYRPTHSRTSPPPDQVITTEAKNILIR 61

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRAST 94
          + YQ  E+K R KR A EHP PEHG KQPRAST
Sbjct: 62 NFYQRAEEKLRPKRAATEHPTPEHGCKQPRAST 94

[Close]
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match: W9SLK4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006707 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-32
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 1 

Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
           MGS+LGD PSYDPHNFSQLRPSDPSTPSKM P TY PTH+RTLPP DQVI TE KNILLR
Sbjct: 59  MGSVLGDWPSYDPHNFSQLRPSDPSTPSKMTPTTYQPTHNRTLPPPDQVITTETKNILLR 118

Query: 61  HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANT 97
           HIYQ  E+K R KR A EH +PEHG KQ RAS  +T
Sbjct: 119 HIYQRAEEKLRPKRAAPEHLLPEHGCKQLRASVQDT 154

[Close]
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match: B9GKD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09870g PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-32
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGS+LGD PS+DPHNFSQLRPSDPS PSKM PATYHPTHSRTLPP DQVI TE KNILLR
Sbjct: 1  MGSLLGDWPSFDPHNFSQLRPSDPSNPSKMTPATYHPTHSRTLPPPDQVITTEAKNILLR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTA 95
          + Y+  E+K R KR A EH MPEHG KQ RAST+
Sbjct: 61 NFYERAEEKLRQKRAASEHLMPEHGCKQARASTS 94

[Close]
BLAST of Cp4.1LG05g03100 vs. TAIR10
Match: AT5G41560.1 (AT5G41560.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 127.9 bits (320), Expect = 3.5e-30
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          M S+LGDLPS+DPHNFSQ RPSDPS PSKM+P TY PTH+RTLPP DQVI TE KNIL+R
Sbjct: 1  MASILGDLPSFDPHNFSQHRPSDPSNPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILIR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTS 98
            YQ  E+K R KRPA +H   EH +K  RA+++++S
Sbjct: 61 SFYQRAEEKLRPKRPATDHLAAEHVNKHFRAASSSSS 97

[Close]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match: gi|449452276|ref|XP_004143885.1| (PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPP DQVINTE KNIL+R
Sbjct: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTSN 99
          HIYQHTE+KSRTKRPA EHPMPEHGSKQPRAST NTSN
Sbjct: 61 HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRASTTNTSN 98

[Close]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match: gi|659073943|ref|XP_008437336.1| (PREDICTED: uncharacterized protein LOC103482787 isoform X2 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPP DQVINTE KNIL+R
Sbjct: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPS-MIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTSN 99
          HIYQHTE+KSRTKRPA EHPMPEHGSKQPRAST NTSN
Sbjct: 61 HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRASTTNTSN 97

[Close]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match: gi|645267188|ref|XP_008238955.1| (PREDICTED: uncharacterized protein LOC103337570 [Prunus mume])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 74/97 (76.29%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGS+ GD PSYDPHNFSQLRPSDPSTPSKM PATYHPTHSRTLPP DQVI TE KNILLR
Sbjct: 1  MGSLFGDWPSYDPHNFSQLRPSDPSTPSKMTPATYHPTHSRTLPPPDQVITTETKNILLR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTS 98
          H+YQ+ E+K R KR A EH +PEHGSKQ RAS ++ +
Sbjct: 61 HMYQNDEEKLRQKRAASEHLLPEHGSKQLRASVSDNA 97

[Close]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match: gi|225426148|ref|XP_002278358.1| (PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Vitis vinifera])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 73/95 (76.84%), Postives = 78/95 (82.11%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGS LGD PS+DPHNFSQLRPSDPS PSKMIPATYHPTH RTLPP DQVI+TE KNILLR
Sbjct: 1  MGSTLGDWPSFDPHNFSQLRPSDPSNPSKMIPATYHPTHDRTLPPPDQVISTETKNILLR 60

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTAN 96
          H YQ  E+K R KR A EH  PEHG KQPRAS ++
Sbjct: 61 HFYQRAEEKLRPKRAASEHLTPEHGCKQPRASASD 95

[Close]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match: gi|823141446|ref|XP_012470544.1| (PREDICTED: uncharacterized protein LOC105788280 isoform X1 [Gossypium raimondii])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 1 

Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLR 60
          MGSMLGDLPS+DPHNFSQLRPSDPS PSK++P TY PTHSRT PP DQVI TE KNIL+R
Sbjct: 2  MGSMLGDLPSFDPHNFSQLRPSDPSNPSKVVPTTYRPTHSRTSPPPDQVITTEAKNILIR 61

Query: 61 HIYQHTEQKSRTKRPAVEHPMPEHGSKQPRAST 94
          + YQ  E+K R KR A EHP PEHG KQPRAST
Sbjct: 62 NFYQRAEEKLRPKRAATEHPTPEHGCKQPRAST 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g03100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKG6_CUCSA1.1e-4593.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152230 PE=4 SV=1[more]
D7TV65_VITVI8.4e-3376.84Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00390 PE=4 SV=... [more]
A0A0D2QQB9_GOSRA1.1e-3276.34Uncharacterized protein OS=Gossypium raimondii GN=B456_003G085700 PE=4 SV=1[more]
W9SLK4_9ROSA4.2e-3276.04Uncharacterized protein OS=Morus notabilis GN=L484_006707 PE=4 SV=1[more]
B9GKD0_POPTR4.2e-3276.60Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09870g PE=4 SV=1[more]
BLAST of Cp4.1LG05g03100 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41560.13.5e-3064.95 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG05g03100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452276|ref|XP_004143885.1|1.6e-4593.88PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus][more]
gi|659073943|ref|XP_008437336.1|1.5e-4392.86PREDICTED: uncharacterized protein LOC103482787 isoform X2 [Cucumis melo][more]
gi|645267188|ref|XP_008238955.1|2.4e-3376.29PREDICTED: uncharacterized protein LOC103337570 [Prunus mume][more]
gi|225426148|ref|XP_002278358.1|1.2e-3276.84PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Vitis vinifera][more]
gi|823141446|ref|XP_012470544.1|1.6e-3276.34PREDICTED: uncharacterized protein LOC105788280 isoform X1 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032434regulation of proteasomal ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR018276DDA1_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0009788 negative regulation of abscisic acid-activated signaling pathway
biological_process GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03100.1Cp4.1LG05g03100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018276Ubiquitin ligase, Det1/DDB1-complexingPFAMPF10172DDA1coord: 3..67
score: 3.4