Carg16612 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16612
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Det1-and ddb1-associated protein 1
Location	Cucurbita_argyrosperma_scaffold_064 : 34454 .. 37225 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTGTAACACAAATTTCCCTCTGTAGATTTCGAACAATCAAAATATATTCAGCGGCGTTTTGATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTGTAAGTTTTCAGTAATGGCGGAATCATCGCCCCCTTTGTTTTCGTTCTTGTAATTGATTTCTGTAATCGTTCATACGTTTCTTTTGTTTTCTTGATCCTGTGTTTTTTCCTCTATTTGTGATGATTGTTGTTTCGTTTCTATTGATGCGAATTTGCTCGAGGTTTTGTTTCGTTAAGGTAGGATGTGAATTTGTGATGAAATTTAACCTCCGCTTGATCTTCTTTGCTCTATTGTTATTTGGATTCTCCCAATTTTTGTTCGCATTATTGATCTGTTTTCTGGTTGTGCGTCGTGATGTGGGAAATTTTGTTTTCGTTTTAGGACTTGGAAATTCTTAAATTCTTGGAATTCTTACATGTATGTTTCGATTACATTACAATTGAGTTTCGCTGTTGGTGTGTTTGATCCAGAAACCTGAAGAAGGAAGAATCTAATGAAGTTCATTAGTTTTCTATTAAACGGCAAGGGGTTGTAACATTCTATGGATTGTCCATTTCTTGCACATAGATGGCTCCCCCTTTTCCCCCGAAACCAAAGAATCAAAATGGTGTTCTTGTTTCGATTGTTACTTCTTTTTTTCTCTCTGTCATGGCATTTTAATCTTGTAAAGTCAGTCCTGTGAAAGAAATGATTCGGTTCCTTTGAAAGAAATGATACCAAGGGAACAAATTCTGCAAGGAACAATCACTAAGTTACTGACCTTTCAGAGAAATGATTCTGTTTACTTCTGTTTACTTCTCATATGTAGGTCATCTTTCAAGTTTCTAATGATTCTGATGCCCAAAAGTGCTTTTAGCCTTTGAGCTTGGAGCAGCCTGCAGCCATTTTAAGTTCCCTCTTTGTTTGAGTATGCTTAGGTTCATTGTTTTACAACGAAAAATCGAAAATTGCAGCGACACGGATTCTTCTATACTGCAAATGAACATTCTGTGTTCCTTGTTTCTCTGATTTTCTTGAGTGGTATACAGTTCACTTTCACAGGTTTAAGCTTAAGACTCCCAATGAAATAGTTTGCATAATGTTTGAAGTCGTTCAATCAATGCTTCTTATGTGAGATCCTATATTGGTTGGGGAGGAGAACTAAACATTCTTTATAAGGGTGTGAAAACCTCTCTCTAGAAGATGCATTTTGAAAACCTTGAGGGAAAACCCGAAAGATAAAGTCCAAAGAGGACAATATCTGTTAGCAGTGGGCTTGGACTGATGTTTTGCCTTTTGTCTTTCTACCTTCAATGGAAACATTAAGATAATGCCTTAATGCAGAAGGATTGACAAATCTAGAACCGTTAATGAGAAGTTTTTGATTGAAGAGATTCTGAAAACATCTCATCTAAGCTACCAAACGGTGTGCCCTTCTCCAAAGGGACATCATTTTGGACATAAGACACATTGAAGCAAGATATAACCAATTTTTCCTTGTAATTGTATGCACAAACTTGTGCTTGCTTTGGATATATCACCCATTTTTTGAATTCATTACAAATGAGCATACTTCACGGGTCGTTGTCACCTGTTAATTTTCCATGGATTGGGTGACCATGTAAACGGAAGAGCTGTCTGGTTCAAACTAAATGCTTTCATTGAAGCTTAAACTGCAGTAGAATGCAACATATTTTTACAAGTGGAGTTTCCAGCTGCAAGAAGTAGAACAAGAAGATGAATTCATTTATTTTCTAACGTAACAAACAAGTTGATTATCGAACTTCTCTGATAAGTCAGTTTTAATTTTATGTAGAAGATGATTCCTGCAACCTATCATCCTACCCACAGTAGGACCCTTCCGCCACCAGATCAGGGTAAGCAAGAACATTTGTTTCTTCATTGCTCTTCTAAGGCCATGATTTTACCAACCATACTGATAACTTTGAATCTTGATCAGCAAACTGCTATCATATTCACAAAAGATCTTGGTTGTTGATACCATGTCATTGATTTTTACTGCAGTTATAGATACTGATGCCAAAAATATACTCATACGCCACATTTATCAGCTTACAGAAGAGAAGGTTAGTATGCTTTGATATGAAAAACAATGTATATATGGGGTGAGGTTGTGAGAGCACTCACACATTCCTTGTGGACTTTTCCCTAATCTTTGTAATGGCAGTCAAGAACAAAGAGACCTGCAGCTGAACATCCCGTGCCGGAGCATGGAAGCAAGCAACCAAGAGCATCATCTACTACCAACGCTTCAAATTGAGGTTAGGCGGACATTTTCTTCCAACAATGTAGAATCTGTTGTACGTTGTGAAAGATGTGTCCTGTATAATGCAAGCGAATTGCCTGCTCACTGAAGAACAAACAGGTCGGCCCCGACATTTAAATGCTGTATATAGATTTTACTCCTACTAAGATTGTCCTAAACTCAGCCACTGCATATTGTTCTCAATATCATAAACTTGGTTCAAGTATTGTAACTATTTTGTCTCTAAATTTTCGAGTTTGATCTATATTGGTTATTGAGTTTTCAAATTTGTTTTGTTTCTGTTCTTGAACTTCAAAATATTTTAGTTTAATTGTTGACTTTATAAAAAATAGTTGACTTGAATCATGGGCTTACCATTTAGTAGAGGCATAATGCCTCTGTCTAACAGCC

mRNA sequence

TCCTCCTCCTCCTCCTCCTCCTCCTCGTTCTTGTAACACAAATTTCCCTCTGTAGATTTCGAACAATCAAAATATATTCAGCGGCGTTTTGATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCAACCTATCATCCTACCCACAGTAGGACCCTTCCGCCACCAGATCAGGTTATAGATACTGATGCCAAAAATATACTCATACGCCACATTTATCAGCTTACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCTGAACATCCCGTGCCGGAGCATGGAAGCAAGCAACCAAGAGCATCATCTACTACCAACGCTTCAAATTGAGGTTAGGCGGACATTTTCTTCCAACAATGTAGAATCTGTTGTACGTTGTGAAAGATGTGTCCTGTATAATGCAAGCGAATTGCCTGCTCACTGAAGAACAAACAGGTCGGCCCCGACATTTAAATGCTGTATATAGATTTTACTCCTACTAAGATTGTCCTAAACTCAGCCACTGCATATTGTTCTCAATATCATAAACTTGGTTCAAGTATTGTAACTATTTTGTCTCTAAATTTTCGAGTTTGATCTATATTGGTTATTGAGTTTTCAAATTTGTTTTGTTTCTGTTCTTGAACTTCAAAATATTTTAGTTTAATTGTTGACTTTATAAAAAATAGTTGACTTGAATCATGGGCTTACCATTTAGTAGAGGCATAATGCCTCTGTCTAACAGCC

Coding sequence (CDS)

ATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCAACCTATCATCCTACCCACAGTAGGACCCTTCCGCCACCAGATCAGGTTATAGATACTGATGCCAAAAATATACTCATACGCCACATTTATCAGCTTACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCTGAACATCCCGTGCCGGAGCATGGAAGCAAGCAACCAAGAGCATCATCTACTACCAACGCTTCAAATTGA

Protein sequence

MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIRHIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN

Homology

[Close]

BLAST of Carg16612 vs. NCBI nr
Match: XP_022928761.1 (DET1- and DDB1-associated protein 1-like [Cucurbita moschata] >XP_022970118.1 DET1- and DDB1-associated protein 1-like [Cucurbita maxima] >XP_023549696.1 DET1- and DDB1-associated protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN
Sbjct: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 99

[Close]

BLAST of Carg16612 vs. NCBI nr
Match: XP_004143885.1 (PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus] >XP_008437335.1 PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis melo] >KGN50058.1 hypothetical protein Csa_5G152230 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.6e-44
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ TEEKSRTKRPAAEHP+PEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRA-STTNTSN 98

[Close]

BLAST of Carg16612 vs. NCBI nr
Match: XP_022157123.1 (DET1- and DDB1-associated protein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ T EKSRTKRPAAEHPVPEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTGEKSRTKRPAAEHPVPEHGSKQPRA-STTNTSN 98

[Close]

BLAST of Carg16612 vs. NCBI nr
Match: XP_008437336.1 (PREDICTED: DET1- and DDB1-associated protein 1 isoform X2 [Cucumis melo] >XP_011654719.1 PREDICTED: DET1- and DDB1-associated protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 4.3e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPS-MIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ TEEKSRTKRPAAEHP+PEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRA-STTNTSN 97

[Close]

BLAST of Carg16612 vs. NCBI nr
Match: XP_022157124.1 (DET1- and DDB1-associated protein 1 isoform X2 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPS-MIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ T EKSRTKRPAAEHPVPEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTGEKSRTKRPAAEHPVPEHGSKQPRA-STTNTSN 97

[Close]

BLAST of Carg16612 vs. TAIR10
Match: AT5G41560.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-31
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
          M S+LGDLPS+DPHNFSQ RPSDPS PSKM+P TY PTH+RTLPPPDQVI T+ KNILIR
Sbjct: 1  MASILGDLPSFDPHNFSQHRPSDPSNPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILIR 60

Query: 61 HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNAS 99
            YQ  EEK R KRPA +H   EH +K  RA+S+++++
Sbjct: 61 SFYQRAEEKLRPKRPATDHLAAEHVNKHFRAASSSSST 98

[Close]

BLAST of Carg16612 vs. TrEMBL
Match: tr|A0A1S3AUC0|A0A1S3AUC0_CUCME (DET1- and DDB1-associated protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482787 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-44
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ TEEKSRTKRPAAEHP+PEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRA-STTNTSN 98

[Close]

BLAST of Carg16612 vs. TrEMBL
Match: tr|A0A0A0KKG6|A0A0A0KKG6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152230 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.1e-44
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ TEEKSRTKRPAAEHP+PEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRA-STTNTSN 98

[Close]

BLAST of Carg16612 vs. TrEMBL
Match: tr|A0A1S3ATF9|A0A1S3ATF9_CUCME (DET1- and DDB1-associated protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482787 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
           MGSMLGDLPSYDPHNFSQLRPSDPSTPS MIPATYHPTHSRTLPPPDQVI+T+AKNILIR
Sbjct: 1   MGSMLGDLPSYDPHNFSQLRPSDPSTPS-MIPATYHPTHSRTLPPPDQVINTEAKNILIR 60

Query: 61  HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASSTTNASN 100
           HIYQ TEEKSRTKRPAAEHP+PEHGSKQPRA STTN SN
Sbjct: 61  HIYQHTEEKSRTKRPAAEHPMPEHGSKQPRA-STTNTSN 97

[Close]

BLAST of Carg16612 vs. TrEMBL
Match: tr|A0A1U8NV87|A0A1U8NV87_GOSHI (uncharacterized protein LOC107952124 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107952124 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-34
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
          MGSMLGDLPS+DPHNFSQLRPSDPS PSK++P TY PTHSRT PPPDQVI T+AKNILIR
Sbjct: 2  MGSMLGDLPSFDPHNFSQLRPSDPSNPSKVVPTTYRPTHSRTSPPPDQVITTEAKNILIR 61

Query: 61 HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASST 95
          + YQ  EEK R KR A EHP PEHG KQPRAS+T
Sbjct: 62 NFYQRAEEKLRPKRAATEHPTPEHGCKQPRASTT 95

[Close]

BLAST of Carg16612 vs. TrEMBL
Match: tr|A0A0D2QQB9|A0A0D2QQB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G085700 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-34
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVIDTDAKNILIR 60
          MGSMLGDLPS+DPHNFSQLRPSDPS PSK++P TY PTHSRT PPPDQVI T+AKNILIR
Sbjct: 2  MGSMLGDLPSFDPHNFSQLRPSDPSNPSKVVPTTYRPTHSRTSPPPDQVITTEAKNILIR 61

Query: 61 HIYQLTEEKSRTKRPAAEHPVPEHGSKQPRASST 95
          + YQ  EEK R KR A EHP PEHG KQPRAS+T
Sbjct: 62 NFYQRAEEKLRPKRAATEHPTPEHGCKQPRASTT 95

The following BLAST results are available for this feature:

BLAST of Carg16612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928761.1	1.4e-48	100.00	DET1- and DDB1-associated protein 1-like [Cucurbita moschata] >XP_022970118.1 DE...	[more]
XP_004143885.1	4.6e-44	93.94	PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus] >XP_...	[more]
XP_022157123.1	1.3e-43	93.94	DET1- and DDB1-associated protein 1 isoform X1 [Momordica charantia]	[more]
XP_008437336.1	4.3e-42	92.93	PREDICTED: DET1- and DDB1-associated protein 1 isoform X2 [Cucumis melo] >XP_011...	[more]
XP_022157124.1	1.3e-41	92.93	DET1- and DDB1-associated protein 1 isoform X2 [Momordica charantia]	[more]

BLAST of Carg16612 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41560.1	1.1e-31	66.33	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg16612 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16612 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUC0\|A0A1S3AUC0_CUCME	3.1e-44	93.94	DET1- and DDB1-associated protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0KKG6\|A0A0A0KKG6_CUCSA	3.1e-44	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152230 PE=4 SV=1	[more]
tr\|A0A1S3ATF9\|A0A1S3ATF9_CUCME	2.9e-42	92.93	DET1- and DDB1-associated protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1U8NV87\|A0A1U8NV87_GOSHI	2.2e-34	78.72	uncharacterized protein LOC107952124 isoform X2 OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|A0A0D2QQB9\|A0A0D2QQB9_GOSRA	2.2e-34	78.72	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G085700 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR033575	DDA1
IPR018276	DDA1_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16612-RA	Carg16612-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018276	DET1- and DDB1-associated protein 1, N-terminal	PFAM	PF10172	DDA1	coord: 3..67 e-value: 8.6E-28 score: 96.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..85
None	No IPR available	PANTHER	PTHR31879:SF2	DET1- AND DDB1-ASSOCIATED PROTEIN 1	coord: 1..96
IPR033575	DET1- and DDB1-associated protein 1	PANTHER	PTHR31879	FAMILY NOT NAMED	coord: 1..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16612	Cla011413	Watermelon (97103) v1	carwmB0938
Carg16612	Csa5G152230	Cucumber (Chinese Long) v2	carcuB0954
Carg16612	MELO3C005713	Melon (DHL92) v3.5.1	carmeB0920
Carg16612	ClCG01G002350	Watermelon (Charleston Gray)	carwcgB0912
Carg16612	CSPI05G05020	Wild cucumber (PI 183967)	carcpiB0977
Carg16612	Cucsa.303510	Cucumber (Gy14) v1	carcgyB1054
Carg16612	CmaCh02G014260	Cucurbita maxima (Rimu)	carcmaB1283
Carg16612	CmoCh15G013180	Cucurbita moschata (Rifu)	carcmoB1252
Carg16612	CmoCh02G014600	Cucurbita moschata (Rifu)	carcmoB1254
Carg16612	Lsi09G002180	Bottle gourd (USVL1VR-Ls)	carlsiB851
Carg16612	Cp4.1LG05g03100	Cucurbita pepo (Zucchini)	carcpeB1298
Carg16612	Cp4.1LG13g01270	Cucurbita pepo (Zucchini)	carcpeB1295
Carg16612	CsGy5G002320	Cucumber (Gy14) v2	carcgybB0927
Carg16612	MELO3C005713.2	Melon (DHL92) v3.6.1	carmedB0927
Carg16612	CsaV3_5G002410	Cucumber (Chinese Long) v3	carcucB0979
Carg16612	Cla97C01G002370	Watermelon (97103) v2	carwmbB0980
Carg16612	Bhi12G000290	Wax gourd	carwgoB1081

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16612	Carg02553	Silver-seed gourd	carcarB643

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16612	Cucurbita maxima (Rimu)	carcmaB1281