Cp4.1LG05g02560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g02560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMUTS-like protein 4
LocationCp4.1LG05 : 1456818 .. 1458906 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGAGTTGCTGCGTTCGATTTGAGATCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGAGTTCGTAACTCCTTCACTCAGCATGCAGTGTCAGTGAAGATTGCTTACTTTTACAGAGAAACTTAAATTGAATGCAAAACTCTGTAGGTTGTAATGGCTCGTGGTTGCTTTGACGACACAAAGGCATTTTCCTTTTTCTTTCCTCTCTTAAAGTTTTATTTTATGCATCTCAGTTTCATATGGTTATTGTATTGGATGCTGTTCTTTAATCAGTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGTATTTTCAGAACTTCAGCCTTCTATAAGTCACATATGGGAAGTGTTATCTATAGTTAACTAATAAGAAGAGAGAATTTTTTTAATGCTTAGTTGTGACTAATGATCCAGCTTCTTGATGCACAGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGGTAAATTTGCCTTTCTGAAATGGTAATGTATAGAATTCAATGGTTTGATTTTCTCCTGATGCTTGAATGAGATTTCGCTGTAAGACAAACGATCTCGTAGTGACCAATATAATTGAATTGAAAAGTCAAGTTTCTGTAGTTCGGTTAAGTTCTCTTCCCAGTTTTCTCGTGTGTAAGATTGCTGACCTAATGCTGGGAAATTATTTAATTTAATTTTTCTTTCCTTTCCTCTTGATTGAGTGCGTAGAACGGATGCACCTTATTTCCTCTTATTCTAACCTCTAGACAAGGCTTTTACTATGCATTGGTTGAGTTGCGAATCATTTTGACTCTTTGTTTATAAGTTTTTTTAATTCGGTATGGGATTTCAATTTTCTCAGCAGCTCATTCCTCTTTCACCTTTTGTTGTTCTACTTTCTAGATTTGTGTTTTGAAAGATAAAGTACTCTGAACAGGACTAAAGATTCTGTCCTGTGGAGGTGTAATTAACTAACTTTAGGAACTAGGCTTAAAACAATGTTGCCTCTCTGATTCGAACATCATTTTTATTAGTCTTCGGAGAGAATATGAACGAGACGTTCATTTATTTCTGGAGTTCTTCCTTCATCCTGATGGTTCTCAGTTGTAACTTTTAGGTCACATTTAATGGTTCATCTGATCATGTGAGCATTGATGCAACGAGGTTCCCTCCATTTCTCTTTCCTTTTCAAATATGTGTTACTGCTGATCGCAATATCAATGTCCAAGTCATTGATTTATATTTTTCATACTTTTCGGAGAACATTTTCTTGAGAATTGGCCACAAAATGTTGGTTTCAAATTACTGATTAATGCTGAATTATATGCTGACAGTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTACGAGGATACCTTAGGAATGTTGATATATTTTTCTTCATTTGTCTACCAATTGCTGCAAAAATTTATTTTGTTCCCTCTTCGTGTTATCATCTAAACTAGTATTTGAAGTCCTCTCGTTTATTACATCTTATCTTGGGGCGGGAAGTTTTGATGACATGTAATTGACCAAAGGGAAAAAATTATTTTGATATGCAGTTATTGCCAAATGCTCGTCTAAAATGTTTTTAGTCCCGCTCGTATCTCAAAATTTTATGCTTTACTCTCTCACTGCAATTTTGGTCAAGTTTTTGTTACAGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

mRNA sequence

GTTGGAGTTGCTGCGTTCGATTTGAGATCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGTTCTTCCTTCATCCTGATGGTTCTCAGTTTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

Coding sequence (CDS)

GTTGGAGTTGCTGCGTTCGATTTGAGATCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGTTCTTCCTTCATCCTGATGGTTCTCAGTTTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

Protein sequence

VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDRFYVTVKKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTFFLHPDGSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCL
Homology
[Close]
BLAST of Cp4.1LG05g02560 vs. Swiss-Prot
Match: MSH4_ARATH (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.9e-75
Identity = 156/210 (74.29%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP VI+VPPNKLA DGMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPSVIIVPPNKLAADGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           R Y TV+            KGAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IKWIE
Sbjct: 83  RCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGLDTYYKQHYLSLAAAAATIKWIE 142

Query: 121 AEKGVIVTNHSLTF-----FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSLT      F H +  +  V NLE+I+P H+ L GTSNKKRSLF M KTT
Sbjct: 143 AEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT GG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTAGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. Swiss-Prot
Match: MSH4_MOUSE (MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-15
Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVL-- 60
           +G+A+ DL+S  + LSQ+ + +++Y    T L    P+ I++            +  L  
Sbjct: 193 IGMASIDLKSPQIMLSQFAD-NTTYAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLIT 252

Query: 61  ----------VDRFYVTVKKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
                     V R Y    KG   I+ L   E S++ +E   + Y  CLAAAAA +K++E
Sbjct: 253 ENFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYY--CLAAAAALLKYVE 312

Query: 121 AEKGVIVTNHSLTFFLHPD------GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
             +  +    SL  +           S    NLE+   L +N    SN   +LF +L  T
Sbjct: 313 FIQNSVYAPKSLKIYFQGSEQTAMIDSSSAQNLEL---LVNNQDYRSN--HTLFGVLNYT 372

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT GGSR LR+N+L+PL D+ETI+ RLDC+
Sbjct: 373 KTAGGSRRLRSNILEPLVDVETISMRLDCV 394

[Close]
BLAST of Cp4.1LG05g02560 vs. Swiss-Prot
Match: MSH4_HUMAN (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 68/210 (32.38%), Postives = 101/210 (48.10%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLV- 60
           +G+A+ DL++  + LSQ+ + +++Y    T L    P+ I++     A      +  L+ 
Sbjct: 171 IGMASIDLKNPQIILSQFAD-NTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLIT 230

Query: 61  -----------DRFYVTVKKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
                       R Y    KG   I+ L   E S + +E   K Y  CLAA AA +K++E
Sbjct: 231 ENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYY--CLAAVAALLKYVE 290

Query: 121 AEKGVIVTNHSLTFFLHPD------GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
             +  +    SL              S    NLE+   L +N    +N   +LF +L  T
Sbjct: 291 FIQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLEL---LINNQDYRNN--HTLFGVLNYT 350

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT GGSR LR+N+L+PL DIETIN RLDC+
Sbjct: 351 KTPGGSRRLRSNILEPLVDIETINMRLDCV 372

[Close]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match: A0A0D2TBE5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.1e-82
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETS SYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSISYQNTKTLLHFYDPMVIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKVVMARGCFDDTKGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+T+HSL  TF   F H +  +  VHNLEI+EPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIITSHSLVVTFNGSFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTIGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match: A0A0D2T5M0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.1e-82
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETS SYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSISYQNTKTLLHFYDPMVIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKVVMARGCFDDTKGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+T+HSL  TF   F H +  +  VHNLEI+EPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIITSHSLVVTFNGSFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTIGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match: A0A0D2U8F6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.1e-82
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETS SYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSISYQNTKTLLHFYDPMVIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKVVMARGCFDDTKGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+T+HSL  TF   F H +  +  VHNLEI+EPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIITSHSLVVTFNGSFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTIGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match: A0A061G376_THECC (MUTS-like protein 4 OS=Theobroma cacao GN=TCM_047017 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.3e-81
Identity = 165/210 (78.57%), Postives = 181/210 (86.19%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM+I+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMMIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL++YYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKIVMARGCFDDTKGAMLIKNLAAREPSALGLDSYYKQYYLCLASASATIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSL  TF   F H +  +  V NLEIIEP HS LWGT+NKKRSLFHMLKTT
Sbjct: 143 AEKGVIVTNHSLSVTFNGSFDHMNIDATSVQNLEIIEPFHSALWGTNNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT+GG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTVGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match: M5WFN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001614mg PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.3e-81
Identity = 169/210 (80.48%), Postives = 177/210 (84.29%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VGVAAFDLR ASLHLSQYIETSSSYQNTKTLL FYDPMVI+V PNKLAPDGMVGVS L D
Sbjct: 23  VGVAAFDLRLASLHLSQYIETSSSYQNTKTLLQFYDPMVIIVSPNKLAPDGMVGVSELAD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY TVK            KGAVLIKNLAAKEPSALGL+T YKQYYLCLAAAAA+IKWIE
Sbjct: 83  RFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGLDTSYKQYYLCLAAAAATIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+TNHSL  TF   F H +  +  V NLEIIEPLHS LWGTSNKKRSL +MLKTT
Sbjct: 143 AEKGVIITNHSLLVTFNGSFAHMNIDATSVQNLEIIEPLHSTLWGTSNKKRSLLNMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT+GGSRLLRANLLQPLKDIETINARLDCL
Sbjct: 203 KTVGGSRLLRANLLQPLKDIETINARLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. TAIR10
Match: AT4G17380.1 (AT4G17380.1 MUTS-like protein 4)

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-76
Identity = 156/210 (74.29%), Postives = 170/210 (80.95%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP VI+VPPNKLA DGMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPSVIIVPPNKLAADGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           R Y TV+            KGAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IKWIE
Sbjct: 83  RCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGLDTYYKQHYLSLAAAAATIKWIE 142

Query: 121 AEKGVIVTNHSLTF-----FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSLT      F H +  +  V NLE+I+P H+ L GTSNKKRSLF M KTT
Sbjct: 143 AEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT GG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTAGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match: gi|659073430|ref|XP_008437055.1| (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 2.4e-85
Identity = 177/210 (84.29%), Postives = 181/210 (86.19%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILV PNKLAPDGMVGVSVL D
Sbjct: 20  VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVSPNKLAPDGMVGVSVLAD 79

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RF+ TVK            KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE
Sbjct: 80  RFFATVKKVVMARSCFDDTKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 139

Query: 121 AEKGVIVTNHSL--TFFLHPD----GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSL  TF    D     +  V NLEIIEPLHSNLWGTSNKKRSL++MLKTT
Sbjct: 140 AEKGVIVTNHSLLVTFNGSSDHVSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTT 199

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGGSRLLRANLLQPLKDIETINARLDCL
Sbjct: 200 KTIGGSRLLRANLLQPLKDIETINARLDCL 229

[Close]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match: gi|1009157114|ref|XP_015896598.1| (PREDICTED: DNA mismatch repair protein MSH4 [Ziziphus jujuba])

HSP 1 Score: 315.5 bits (807), Expect = 6.6e-83
Identity = 172/210 (81.90%), Postives = 179/210 (85.24%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VGVAAFDLRSASLHLSQYIET+SSYQNT+TLLHFYDPMVI+V PNKLAPDG VGVS LVD
Sbjct: 23  VGVAAFDLRSASLHLSQYIETTSSYQNTRTLLHFYDPMVIIVSPNKLAPDGRVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY TVK            KGAVLIKNLAAKEPSALGL+TYYKQYYLCLAAAAASIKWIE
Sbjct: 83  RFYATVKKVVMPRGCYDDTKGAVLIKNLAAKEPSALGLDTYYKQYYLCLAAAAASIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSL  TF   F H +  +  V NLEIIEPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEPLHSTLWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT GG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTFGGTRLLRANLLQPLKDIETINGRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match: gi|823213440|ref|XP_012439464.1| (PREDICTED: DNA mismatch repair protein MSH4 isoform X1 [Gossypium raimondii])

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETS SYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSISYQNTKTLLHFYDPMVIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKVVMARGCFDDTKGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+T+HSL  TF   F H +  +  VHNLEI+EPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIITSHSLVVTFNGSFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTIGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match: gi|763784779|gb|KJB51850.1| (hypothetical protein B456_008G234100 [Gossypium raimondii])

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VG+AAFDLRSASLHLSQYIETS SYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD
Sbjct: 23  VGMAAFDLRSASLHLSQYIETSISYQNTKTLLHFYDPMVIIVPPNKLAPEGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY +VK            KGA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIE
Sbjct: 83  RFYASVKKVVMARGCFDDTKGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVI+T+HSL  TF   F H +  +  VHNLEI+EPLHS LWGTSNKKRSLFHMLKTT
Sbjct: 143 AEKGVIITSHSLVVTFNGSFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KTIGG+RLLRANLLQPLKDIETIN RLDCL
Sbjct: 203 KTIGGTRLLRANLLQPLKDIETINTRLDCL 232

[Close]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match: gi|694412415|ref|XP_009334525.1| (PREDICTED: DNA mismatch repair protein MSH4-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 171/210 (81.43%), Postives = 178/210 (84.76%), Query Frame = 1 

Query: 1   VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD 60
           VGVAAFDLR ASLHLSQYIETSSSYQNTKTLL FYDPMVI+V PNKLAPDGMVGVS LVD
Sbjct: 23  VGVAAFDLRLASLHLSQYIETSSSYQNTKTLLQFYDPMVIIVSPNKLAPDGMVGVSELVD 82

Query: 61  RFYVTVK------------KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
           RFY TVK            KGAVLIKNLAAKEPSALGL+TYYKQYYLCLAAAAA+IKWIE
Sbjct: 83  RFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGLDTYYKQYYLCLAAAAATIKWIE 142

Query: 121 AEKGVIVTNHSL--TF---FLHPD-GSQFVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTT 180
           AEKGVIVTNHSL  TF   F H +  +  V NLEIIEPLHS LWGTSNKKRSL +M KTT
Sbjct: 143 AEKGVIVTNHSLVVTFNGSFAHMNIDATSVQNLEIIEPLHSTLWGTSNKKRSLLNMFKTT 202

Query: 181 KTIGGSRLLRANLLQPLKDIETINARLDCL 193
           KT+GGSRLLRANLLQPLKDIETINARLDCL
Sbjct: 203 KTVGGSRLLRANLLQPLKDIETINARLDCL 232

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g02560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MSH4_ARATH3.9e-7574.29DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4 PE=2 SV=1[more]
MSH4_MOUSE3.4e-1532.38MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1[more]
MSH4_HUMAN2.2e-1432.38MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2[more]
BLAST of Cp4.1LG05g02560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2TBE5_GOSRA5.1e-8279.05Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1[more]
A0A0D2T5M0_GOSRA5.1e-8279.05Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1[more]
A0A0D2U8F6_GOSRA5.1e-8279.05Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1[more]
A0A061G376_THECC3.3e-8178.57MUTS-like protein 4 OS=Theobroma cacao GN=TCM_047017 PE=4 SV=1[more]
M5WFN5_PRUPE7.3e-8180.48Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001614mg PE=4 SV=1[more]
BLAST of Cp4.1LG05g02560 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17380.12.2e-7674.29 MUTS-like protein 4[more]
BLAST of Cp4.1LG05g02560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073430|ref|XP_008437055.1|2.4e-8584.29PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo][more]
gi|1009157114|ref|XP_015896598.1|6.6e-8381.90PREDICTED: DNA mismatch repair protein MSH4 [Ziziphus jujuba][more]
gi|823213440|ref|XP_012439464.1|7.3e-8279.05PREDICTED: DNA mismatch repair protein MSH4 isoform X1 [Gossypium raimondii][more]
gi|763784779|gb|KJB51850.1|7.3e-8279.05hypothetical protein B456_008G234100 [Gossypium raimondii][more]
gi|694412415|ref|XP_009334525.1|7.3e-8281.43PREDICTED: DNA mismatch repair protein MSH4-like isoform X2 [Pyrus x bretschneid... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination
biological_process GO:0007129 synapsis
biological_process GO:0006298 mismatch repair
cellular_component GO:0000794 condensed nuclear chromosome
cellular_component GO:0043073 germ cell nucleus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g02560.1Cp4.1LG05g02560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 133..191
score: 2.5
IPR007696DNA mismatch repair protein MutS, coreunknownSSF48334DNA repair protein MutS, domain IIIcoord: 133..191
score: 1.02
NoneNo IPR availableGENE3DG3DSA:1.10.1420.10coord: 132..191
score: 8.9
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR MUTS RELATED PROTEINScoord: 1..192
score: 1.0
NoneNo IPR availablePANTHERPTHR11361:SF21MUTS PROTEIN HOMOLOG 4coord: 1..192
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g02560CmaCh02G015300Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g02560CmoCh02G015750Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g02560Cla003669Watermelon (97103) v1cpewmB713
Cp4.1LG05g02560Csa5G164660Cucumber (Chinese Long) v2cpecuB738
Cp4.1LG05g02560MELO3C005519Melon (DHL92) v3.5.1cpemeB652
Cp4.1LG05g02560ClCG01G004190Watermelon (Charleston Gray)cpewcgB637
Cp4.1LG05g02560CSPI05G06980Wild cucumber (PI 183967)cpecpiB740
Cp4.1LG05g02560Lsi09G004380Bottle gourd (USVL1VR-Ls)cpelsiB580
Cp4.1LG05g02560MELO3C005519.2Melon (DHL92) v3.6.1cpemedB776
Cp4.1LG05g02560CsaV3_5G004390Cucumber (Chinese Long) v3cpecucB0917
Cp4.1LG05g02560Bhi12G000434Wax gourdcpewgoB0911
Cp4.1LG05g02560CsGy5G004380Cucumber (Gy14) v2cgybcpeB687
Cp4.1LG05g02560Carg02457Silver-seed gourdcarcpeB1282
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g02560Cp4.1LG00g06480Cucurbita pepo (Zucchini)cpecpeB013
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g02560Wild cucumber (PI 183967)cpecpiB721
Cp4.1LG05g02560Wild cucumber (PI 183967)cpecpiB734
Cp4.1LG05g02560Cucumber (Chinese Long) v2cpecuB719
Cp4.1LG05g02560Cucumber (Chinese Long) v2cpecuB732
Cp4.1LG05g02560Bottle gourd (USVL1VR-Ls)cpelsiB585
Cp4.1LG05g02560Bottle gourd (USVL1VR-Ls)cpelsiB624
Cp4.1LG05g02560Watermelon (Charleston Gray)cpewcgB641
Cp4.1LG05g02560Watermelon (Charleston Gray)cpewcgB676
Cp4.1LG05g02560Watermelon (97103) v1cpewmB703
Cp4.1LG05g02560Watermelon (97103) v1cpewmB711
Cp4.1LG05g02560Melon (DHL92) v3.5.1cpemeB647
Cp4.1LG05g02560Melon (DHL92) v3.5.1cpemeB697
Cp4.1LG05g02560Cucumber (Gy14) v2cgybcpeB427
Cp4.1LG05g02560Cucumber (Gy14) v2cgybcpeB693
Cp4.1LG05g02560Melon (DHL92) v3.6.1cpemedB774
Cp4.1LG05g02560Melon (DHL92) v3.6.1cpemedB780
Cp4.1LG05g02560Melon (DHL92) v3.6.1cpemedB831
Cp4.1LG05g02560Silver-seed gourdcarcpeB0769
Cp4.1LG05g02560Cucumber (Chinese Long) v3cpecucB0896
Cp4.1LG05g02560Cucumber (Chinese Long) v3cpecucB0911
Cp4.1LG05g02560Wax gourdcpewgoB0921
Cp4.1LG05g02560Cucurbita pepo (Zucchini)cpecpeB226
Cp4.1LG05g02560Cucurbita pepo (Zucchini)cpecpeB224
Cp4.1LG05g02560Cucurbita pepo (Zucchini)cpecpeB508
Cp4.1LG05g02560Cucumber (Gy14) v1cgycpeB0341
Cp4.1LG05g02560Cucumber (Gy14) v1cgycpeB0686
Cp4.1LG05g02560Cucumber (Gy14) v1cgycpeB0792
Cp4.1LG05g02560Cucumber (Gy14) v1cgycpeB0794
Cp4.1LG05g02560Cucurbita maxima (Rimu)cmacpeB329
Cp4.1LG05g02560Cucurbita maxima (Rimu)cmacpeB332
Cp4.1LG05g02560Cucurbita moschata (Rifu)cmocpeB292
Cp4.1LG05g02560Cucurbita moschata (Rifu)cmocpeB296
Cp4.1LG05g02560Cucurbita moschata (Rifu)cmocpeB792