Cp4.1LG00g06480 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g06480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MUTS-like protein 4
Location	Cp4.1LG00 : 22761170 .. 22763147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGAGTTCGTAACTCCTTCACTCAGCATGCAGTGTCAGTGAAGATTGCTTACTTTTACAGAGAAACTTAAATTGAATGCAAAACTCTGTAGGTTGTAATGGCTCGTGGTTGCTTTGACGACACAAAGGCATTTTCCTTTTTCTTTCCTCTCTTAAAGTTTTATTTTATGCATCTCAGTTTCATATGGTTATTGTATTGGATGCTGTTCTTTAATCAGTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGTATTTTCAGAACTTCAGCCTTCTATAAGTCACATATGGGAAGTGTTATCTATAGTTAACTAATAAGAAGAGAGAATTTTTTTAATGCTTAGTTGTGACTAATGATCCAGCTTCTTGATGCACAGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGGTAAATTTGCCTTTCTGAAATGGTAATGTATAGAATTCAATGGTTTGATTTTCTCCTGATGCTTGAATGAGATTTCGCTGTAAGACAAACGATCTCGTAGTGACCAATATAATTGAATTGAAAAGTCAAGTTTCTGTAGTTCGGTTAAGTTCTCTTCCCAGTTTTCTCGTGTGTAAGATTGCTGACCTAATGCTGGGAAATTATTTAATTTAATTTTTCTTTCCTTTCCTCTTGATTGAGTGCGTAGAACGGATGCACCTTATTTCCTCTTATTCTAACCTCTAGACAAGGCTTTTACTATGCATTGGTTGAGTTGCGAATCATTTTGACTCTTTGTTTATAAGTTTTTTTAATTCGGTATGGGATTTCAATTTTCTCAGCAGCTCATTCCTCTTTCACCTTTTGTTGTTCTACTTTCTAGATTTGTGTTTTGAAAGATAAAGTACTCTGAACAGGACTAAAGATTCTGTCCTGTGGAGGTGTAATTAACTAACTTTAGGAACTAGGCTTAAAACAATGTTGCCTCTCTGATTCGAACATCATTTTTATTAGTCTTCGGAGAGAATATGAACGAGACGTTCATTTATTTCTGGAGTTCTTCCTTCATCCTGATGGTTCTCAGTTGTAACTTTTAGGTCACATTTAATGGTTCATCTGATCATGTGAGCATTGATGCAACGAGGTTCCCTCCATTTCTCTTTCCTTTTCAAATATGTGTTACTGCTGATCGCAATATCAATGTCCAAGTCATTGATTTATATTTTTCATACTTTTCGGAGAACATTTTCTTGAGAATTGGCCACAAAATGTTGGTTTCAAATTACTGATTAATGCTGAATTATATGCTGACAGTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTACGAGGATACCTTAGGAATGTTGATATATTTTTCTTCATTTGTCTACCAATTGCTGCAAAAATTTATTTTGTTCCCTCTTCGTGTTATCATCTAAACTAGTATTTGAAGTCCTCTCGTTTATTACATCTTATCTTGGGGCGGGAAGTTTTGATGACATGTAATTGACCAAAGGGAAAAAATTATTTTGATATGCAGTTATTGCCAAATGCTCGTCTAAAATGTTTTTAGTCCCGCTCGTATCTCAAAATTTTATGCTTTACTCTCTCACTGCAATTTTGGTAAGGTTTTTGTTACAGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

mRNA sequence

ATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGATTTCATATGGTTATTGTATTGGATGCTGTTCTTTAATCAGTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGGTCACATTTAATGGTTCATCTGATCATGTGAGCATTGATGCAACGAGTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

Coding sequence (CDS)

ATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCTGTTTTGGTAGACAGATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGATTTCATATGGTTATTGTATTGGATGCTGTTCTTTAATCAGTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGTGCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATGGATAGAAGCAGAGAAGGGGGTTATTGTGACCAATCACTCTTTAACGGTCACATTTAATGGTTCATCTGATCATGTGAGCATTGATGCAACGAGTGTTCACAATTTAGAAATTATTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACAAAAACTATAGGAGGGTCTAGACTTCTTCGTGCCAATCTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTG

Protein sequence

MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNGSSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCL

Homology

[Close]

BLAST of Cp4.1LG00g06480 vs. Swiss-Prot
Match: MSH4_ARATH (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-64
Identity = 135/191 (70.68%), Postives = 150/191 (78.53%), Query Frame = 1


Query: 2   VILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRTF 61
           VI+VPPNKLA DGMVGVS LVDR Y TV+KV         +  GC               
Sbjct: 61  VIIVPPNKLAADGMVGVSELVDRCYSTVRKVV--------FARGCFD-----------DT 120

Query: 62  QGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNGS 121
           +GAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IKWIEAEKGVIVTNHSLTVTFNGS
Sbjct: 121 KGAVLIQNLAAEEPLALGLDTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGS 180

Query: 122 SDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKD 181
            DH++IDATSV NLE+I+P H+ L GTSNKKRSLF M KTTKT GG+RLLRANLLQPLKD
Sbjct: 181 FDHMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKD 232

Query: 182 IETINARLDCL 193
           IETIN RLDCL
Sbjct: 241 IETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. Swiss-Prot
Match: MSH4_HUMAN (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1


Query: 54  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHS 113
           R Y + T +G   I+ L   E S + +E   K Y  CLAA AA +K++E  +  +    S
Sbjct: 242 RKYFNET-KGLEYIEQLCIAEFSTVLMEVQSKYY--CLAAVAALLKYVEFIQNSVYAPKS 301

Query: 114 LTVTFNGSSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRA 173
           L + F GS     ID++S  NLE+   L +N    +N   +LF +L  TKT GGSR LR+
Sbjct: 302 LKICFQGSEQTAMIDSSSAQNLEL---LINNQDYRNN--HTLFGVLNYTKTPGGSRRLRS 361

Query: 174 NLLQPLKDIETINARLDCL 193
           N+L+PL DIETIN RLDC+
Sbjct: 362 NILEPLVDIETINMRLDCV 372

[Close]

BLAST of Cp4.1LG00g06480 vs. Swiss-Prot
Match: MSH4_MOUSE (MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 58/139 (41.73%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 54  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHS 113
           R Y + T +G   I+ L   E S++ +E   + Y  CLAAAAA +K++E  +  +    S
Sbjct: 264 RKYFNET-KGLEYIEQLCIAEFSSVLMEVQSRYY--CLAAAAALLKYVEFIQNSVYAPKS 323

Query: 114 LTVTFNGSSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRA 173
           L + F GS     ID++S  NLE+   L +N    SN   +LF +L  TKT GGSR LR+
Sbjct: 324 LKIYFQGSEQTAMIDSSSAQNLEL---LVNNQDYRSN--HTLFGVLNYTKTAGGSRRLRS 383

Query: 174 NLLQPLKDIETINARLDCL 193
           N+L+PL D+ETI+ RLDC+
Sbjct: 384 NILEPLVDVETISMRLDCV 394

[Close]

BLAST of Cp4.1LG00g06480 vs. Swiss-Prot
Match: MUTS_KORVE (DNA mismatch repair protein MutS OS=Koribacter versatilis (strain Ellin345) GN=mutS PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.5e-06
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 92  AAAAASIKWI-EAEKGVIVTNHSLTVTFNGSSDHVSIDATSVHNLEIIEPLHSNLWGTSN 151
           +AA A + ++ + ++G +  +H   + F    + + +DA +V NLE+IEPL +N    + 
Sbjct: 249 SAAGAILHYVRQTQRGSL--HHVDRIGFYERQNCLVLDAVTVRNLELIEPLFTN----TG 308

Query: 152 KKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCL 193
           +  +LF  L  T T  G RLLRA +L+P  D   INARLD +
Sbjct: 309 EGVTLFRALDATMTPMGKRLLRAWMLRPSIDTSEINARLDAI 344

[Close]

BLAST of Cp4.1LG00g06480 vs. TrEMBL
Match: A0A0D2TBE5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.6e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. TrEMBL
Match: A0A0D2U8F6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.6e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. TrEMBL
Match: A0A0D2T5M0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.6e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. TrEMBL
Match: A0A061G376_THECC (MUTS-like protein 4 OS=Theobroma cacao GN=TCM_047017 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.9e-69
Identity = 141/192 (73.44%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           M+I+VPPNKLAP+GMVGVS LVDRFY +VKK                  I M R     T
Sbjct: 60  MMIIVPPNKLAPEGMVGVSELVDRFYASVKK------------------IVMARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL++YYKQYYLCLA+A+A+IKWIEAEKGVIVTNHSL+VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDSYYKQYYLCLASASATIKWIEAEKGVIVTNHSLSVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++IDATSV NLEIIEP HS LWGT+NKKRSLFHMLKTTKT+GG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDATSVQNLEIIEPFHSALWGTNNKKRSLFHMLKTTKTVGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. TrEMBL
Match: M5WFN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001614mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.4e-69
Identity = 146/192 (76.04%), Postives = 155/192 (80.73%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+V PNKLAPDGMVGVS L DRFY TVKKV                   M R     T
Sbjct: 60  MVIIVSPNKLAPDGMVGVSELADRFYATVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GAVLIKNLAAKEPSALGL+T YKQYYLCLAAAAA+IKWIEAEKGVI+TNHSL VTFNG
Sbjct: 120 -KGAVLIKNLAAKEPSALGLDTSYKQYYLCLAAAAATIKWIEAEKGVIITNHSLLVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S  H++IDATSV NLEIIEPLHS LWGTSNKKRSL +MLKTTKT+GGSRLLRANLLQPLK
Sbjct: 180 SFAHMNIDATSVQNLEIIEPLHSTLWGTSNKKRSLLNMLKTTKTVGGSRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETINARLDCL
Sbjct: 240 DIETINARLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. TAIR10
Match: AT4G17380.1 (AT4G17380.1 MUTS-like protein 4)

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-65
Identity = 135/191 (70.68%), Postives = 150/191 (78.53%), Query Frame = 1


Query: 2   VILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRTF 61
           VI+VPPNKLA DGMVGVS LVDR Y TV+KV         +  GC               
Sbjct: 61  VIIVPPNKLAADGMVGVSELVDRCYSTVRKVV--------FARGCFD-----------DT 120

Query: 62  QGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNGS 121
           +GAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IKWIEAEKGVIVTNHSLTVTFNGS
Sbjct: 121 KGAVLIQNLAAEEPLALGLDTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGS 180

Query: 122 SDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKD 181
            DH++IDATSV NLE+I+P H+ L GTSNKKRSLF M KTTKT GG+RLLRANLLQPLKD
Sbjct: 181 FDHMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKD 232

Query: 182 IETINARLDCL 193
           IETIN RLDCL
Sbjct: 241 IETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. NCBI nr
Match: gi|659073430|ref|XP_008437055.1| (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 6.6e-75
Identity = 158/192 (82.29%), Postives = 162/192 (84.38%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVILV PNKLAPDGMVGVSVL DRF+ TVKKV                   M RS    T
Sbjct: 57  MVILVSPNKLAPDGMVGVSVLADRFFATVKKVV------------------MARSCFDDT 116

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSL VTFNG
Sbjct: 117 -KGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLLVTFNG 176

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           SSDHVSIDATSV NLEIIEPLHSNLWGTSNKKRSL++MLKTTKTIGGSRLLRANLLQPLK
Sbjct: 177 SSDHVSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTTKTIGGSRLLRANLLQPLK 229

Query: 181 DIETINARLDCL 193
           DIETINARLDCL
Sbjct: 237 DIETINARLDCL 229

[Close]

BLAST of Cp4.1LG00g06480 vs. NCBI nr
Match: gi|1009157114|ref|XP_015896598.1| (PREDICTED: DNA mismatch repair protein MSH4 [Ziziphus jujuba])

HSP 1 Score: 275.4 bits (703), Expect = 7.5e-71
Identity = 150/192 (78.12%), Postives = 156/192 (81.25%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+V PNKLAPDG VGVS LVDRFY TVKKV                   M R     T
Sbjct: 60  MVIIVSPNKLAPDGRVGVSELVDRFYATVKKVV------------------MPRGCYDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GAVLIKNLAAKEPSALGL+TYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSL VTFNG
Sbjct: 120 -KGAVLIKNLAAKEPSALGLDTYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLLVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++IDATSV NLEIIEPLHS LWGTSNKKRSLFHMLKTTKT GG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDATSVQNLEIIEPLHSTLWGTSNKKRSLFHMLKTTKTFGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINGRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. NCBI nr
Match: gi|823213440|ref|XP_012439464.1| (PREDICTED: DNA mismatch repair protein MSH4 isoform X1 [Gossypium raimondii])

HSP 1 Score: 273.1 bits (697), Expect = 3.7e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

[Close]

BLAST of Cp4.1LG00g06480 vs. NCBI nr
Match: gi|763784779|gb|KJB51850.1| (hypothetical protein B456_008G234100 [Gossypium raimondii])

HSP 1 Score: 273.1 bits (697), Expect = 3.7e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

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BLAST of Cp4.1LG00g06480 vs. NCBI nr
Match: gi|823213442|ref|XP_012439465.1| (PREDICTED: DNA mismatch repair protein MSH4 isoform X2 [Gossypium raimondii])

HSP 1 Score: 273.1 bits (697), Expect = 3.7e-70
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MVILVPPNKLAPDGMVGVSVLVDRFYVTVKKVSSYSPISYGYCIGCCSLISMLRSYLSRT 60
           MVI+VPPNKLAP+GMVGVS LVDRFY +VKKV                   M R     T
Sbjct: 60  MVIIVPPNKLAPEGMVGVSELVDRFYASVKKVV------------------MARGCFDDT 119

Query: 61  FQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLTVTFNG 120
            +GA+LIKNLAA+EPSALGL+TYYKQYYLCLA+A+A+IKWIEAEKGVI+T+HSL VTFNG
Sbjct: 120 -KGAMLIKNLAAREPSALGLDTYYKQYYLCLASASAAIKWIEAEKGVIITSHSLVVTFNG 179

Query: 121 SSDHVSIDATSVHNLEIIEPLHSNLWGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLK 180
           S DH++ID TSVHNLEI+EPLHS LWGTSNKKRSLFHMLKTTKTIGG+RLLRANLLQPLK
Sbjct: 180 SFDHMNIDTTSVHNLEIVEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLK 232

Query: 181 DIETINARLDCL 193
           DIETIN RLDCL
Sbjct: 240 DIETINTRLDCL 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g06480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MSH4_ARATH	4.0e-64	70.68	DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana GN=MSH4 PE=2 SV=1	[more]
MSH4_HUMAN	3.1e-16	42.45	MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2	[more]
MSH4_MOUSE	3.1e-16	41.73	MutS protein homolog 4 OS=Mus musculus GN=Msh4 PE=2 SV=1	[more]
MUTS_KORVE	6.5e-06	36.27	DNA mismatch repair protein MutS OS=Koribacter versatilis (strain Ellin345) GN=m...	[more]

BLAST of Cp4.1LG00g06480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2TBE5_GOSRA	2.6e-70	74.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1	[more]
A0A0D2U8F6_GOSRA	2.6e-70	74.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1	[more]
A0A0D2T5M0_GOSRA	2.6e-70	74.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G234100 PE=4 SV=1	[more]
A0A061G376_THECC	4.9e-69	73.44	MUTS-like protein 4 OS=Theobroma cacao GN=TCM_047017 PE=4 SV=1	[more]
M5WFN5_PRUPE	8.4e-69	76.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001614mg PE=4 SV=1	[more]

BLAST of Cp4.1LG00g06480 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17380.1	2.3e-65	70.68	MUTS-like protein 4	[more]

BLAST of Cp4.1LG00g06480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073430\|ref\|XP_008437055.1\|	6.6e-75	82.29	PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo]	[more]
gi\|1009157114\|ref\|XP_015896598.1\|	7.5e-71	78.13	PREDICTED: DNA mismatch repair protein MSH4 [Ziziphus jujuba]	[more]
gi\|823213440\|ref\|XP_012439464.1\|	3.7e-70	74.48	PREDICTED: DNA mismatch repair protein MSH4 isoform X1 [Gossypium raimondii]	[more]
gi\|763784779\|gb\|KJB51850.1\|	3.7e-70	74.48	hypothetical protein B456_008G234100 [Gossypium raimondii]	[more]
gi\|823213442\|ref\|XP_012439465.1\|	3.7e-70	74.48	PREDICTED: DNA mismatch repair protein MSH4 isoform X2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0030983	mismatched DNA binding
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006298	mismatch repair

Vocabulary: **INTERPRO**
Term	Definition
IPR007696	DNA_mismatch_repair_MutS_core

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010777	meiotic mismatch repair involved in reciprocal meiotic recombination
biological_process	GO:0007129	synapsis
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0043073	germ cell nucleus
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g06480.1	Cp4.1LG00g06480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007696	DNA mismatch repair protein MutS, core	PFAM	PF05192	MutS_III	coord: 131..191 score: 9.5
IPR007696	DNA mismatch repair protein MutS, core	unknown	SSF48334	DNA repair protein MutS, domain III	coord: 128..191 score: 3.4
None	No IPR available	unknown	Coil	Coil	coord: 182..192 scor
None	No IPR available	GENE3D	G3DSA:1.10.1420.10		coord: 125..191 score: 1.3
None	No IPR available	PANTHER	PTHR11361	DNA MISMATCH REPAIR MUTS RELATED PROTEINS	coord: 48..192 score: 3.2
None	No IPR available	PANTHER	PTHR11361:SF21	MUTS PROTEIN HOMOLOG 4	coord: 48..192 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g06480	CmoCh02G015750	Cucurbita moschata (Rifu)	cmocpeB544

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g06480	Cp4.1LG05g02560	Cucurbita pepo (Zucchini)	cpecpeB013

The following block(s) are covering this gene:

None