Cp4.1LG05g00240 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g00240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosome maturation factor rimM
Location	Cp4.1LG05 : 886762 .. 888450 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGATAATTTGGGGGTGTCATTGCAAGAGTTAAACGTCACGAGGCCCAAACGGAAAAAACTCGCACAAAAAGTTTATCACGGTACTGACCTCCTTTCAGTGAGCAACATCGCTTCTCTCTCTACTTCTCTCTGTCTCTCTCTACGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTTCTTTAATTCTCAACTACGACGGACAAGACGACGATAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGGTACCTGCAATTCCTCCCATCGGAATCGACAATCGCTTTGTACTTCGCTTTAGTTTGATTCTAATCGATCGTTTCAGTTGATATTCTGTTTCAATCGTTTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGGTATAATGTAGTTGATGATTTCGCGAATTGAGGCATTATCTGTTTAATTTCTGAATTTGAATCTCTTCATTTGGTGAATTTCTGGCAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCGCTCCGAGGAAACTCGCCGATTTCTAAACTCCGCATTACCGATATCTAACCTTCCGGTAAAATCTCACCGACCTCGTTTTCGCCTCACGGCTTCTCATGCCGGCGCGTGCTCCTCTCGTAACTATTTTTTAAATTAAAAGCTTCTGTTCATCAAATACTCCGTCAGATTAAATTGTTCTATTCCTTTTCTTTTACTTTTTCAATTTTTTGTTTGCCTCTGCTAGCGCCGGTGGCACTTCTGTAACTTAATACAAACAAAGAATGAATAAATTGTCAGTTTATCAGAAAGCAAAACCATGACGCGCCGCTTTATCCCCGGCGCGTTAATTCCCGGCGCGTCGGAGATGAAAATGGAATCCAGCTGCAATATATTGTTATTTTCGATTTTCCGAATCGGACCGTTATGTCATTGAGAGAAGGGCCGAGACGCCAGCTGGAAAATGCTGTAGTCGCTGACGGTATCAGGTTCTTTCTATCAAATTTATTTTTAAGCCCTCCATTTATTGCCTATTTAGTTTTGTGGTTGCCCCTCCACATATCTCCTCTAGCTTTTGGGATTTTCTTCGATGGGTTTATTATTAAAATAAAATTAGTAATATAATTGAGGCTGGGTGTCGGTAGATACTTTTATTTTGATAATTCTGTTCCTTACCGGACAAGGGACCGACGGGTCCCCATTTAATGAATAGCATTACTTTAAATCATTCATTTGTCTTATTTACTTAATAAAAATAAAATATATTTCAAATAAATATAATTTTGATAATGTAATTACTTAACTTATTTAAATTCAATTATTAAAGTAGTTTTTATCCACGTCTTTAAGGATTATTAGATGACATGTAAATTTTTAATTTGTAGCAATAATTATTTAGAGGAAGTGGGCCATTTTATTCAATAATT

mRNA sequence

TAGATAATTTGGGGGTGTCATTGCAAGAGTTAAACGTCACGAGGCCCAAACGGAAAAAACTCGCACAAAAAGTTTATCACGGTACTGACCTCCTTTCAGTGAGCAACATCGCTTCTCTCTCTACTTCTCTCTGTCTCTCTCTACGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTTCTTTAATTCTCAACTACGACGGACAAGACGACGATAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCGCTCCGAGGAAACTCGCCGATTTCTAAACTCCGCATTACCGATATCTAACCTTCCGGTAAAATCTCACCGACCTCGTTTTCGCCTCACGGCTTCTCATGCCGGCGCGTGCTCCTCTCGTAACTATTTTTTAAATTAAAAGCTTCTGTTCATCAAATACTCCGTCAGATTAAATTGTTCTATTCCTTTTCTTTTACTTTTTCAATTTTTTGTTTGCCTCTGCTAGCGCCGGTGGCACTTCTGTAACTTAATACAAACAAAGAATGAATAAATTGTCAGTTTATCAGAAAGCAAAACCATGACGCGCCGCTTTATCCCCGGCGCGTTAATTCCCGGCGCGTCGGAGATGAAAATGGAATCCAGCTGCAATATATTGTTATTTTCGATTTTCCGAATCGGACCGTTATGTCATTGAGAGAAGGGCCGAGACGCCAGCTGGAAAATGCTGTAGTCGCTGACGGTATCAGGTTCTTTCTATCAAATTTATTTTTAAGCCCTCCATTTATTGCCTATTTAGTTTTGTGGTTGCCCCTCCACATATCTCCTCTAGCTTTTGGGATTTTCTTCGATGGGTTTATTATTAAAATAAAATTAGTAATATAATTGAGGCTGGGTGTCGGTAGATACTTTTATTTTGATAATTCTGTTCCTTACCGGACAAGGGACCGACGGGTCCCCATTTAATGAATAGCATTACTTTAAATCATTCATTTGTCTTATTTACTTAATAAAAATAAAATATATTTCAAATAAATATAATTTTGATAATGTAATTACTTAACTTATTTAAATTCAATTATTAAAGTAGTTTTTATCCACGTCTTTAAGGATTATTAGATGACATGTAAATTTTTAATTTGTAGCAATAATTATTTAGAGGAAGTGGGCCATTTTATTCAATAATT

Coding sequence (CDS)

ATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTTCTTTAATTCTCAACTACGACGGACAAGACGACGATAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCGCTCCGAGGAAACTCGCCGATTTCTAA

Protein sequence

MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF

Homology

[Close]

BLAST of Cp4.1LG05g00240 vs. TrEMBL
Match: A0A0A0LE94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901050 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-71
Identity = 140/158 (88.61%), Postives = 147/158 (93.04%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
           FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFK PS+ LEIKA+GDE
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEIKADGDE 120

Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           LI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKLADF
Sbjct: 121 LILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 158

[Close]

BLAST of Cp4.1LG05g00240 vs. TrEMBL
Match: A0A067LDV1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02954 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.1e-29
Identity = 81/167 (48.50%), Postives = 106/167 (63.47%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDD----KASKS 60
           MQRQSLGSPVSKL+ HG   K D + +D              L+    DDD    KA+K 
Sbjct: 1   MQRQSLGSPVSKLNSHGGAPKEDTLMSDT-------------LSLPAYDDDGGHRKATKP 60

Query: 61  FRFSF----PTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHL 120
            RFS     P+ SP + EK VH IPILT +CFL+LY+ SHSPSQSDL+QF+GFK+  +H+
Sbjct: 61  RRFSMSSSSPSSSPSKPEKLVHFIPILTFLCFLVLYLVSHSPSQSDLSQFNGFKQSLKHI 120

Query: 121 EIKAEGDELIVPKKGNILAIQSLRNLKEI-EKSHSLRSRAPRKLADF 159
           +   +       ++G++LA QSLRNL+EI +K  S +SRA RK+ADF
Sbjct: 121 DSVTDVSGFSELRRGDVLARQSLRNLREIADKRASAKSRAHRKIADF 154

[Close]

BLAST of Cp4.1LG05g00240 vs. TrEMBL
Match: W9R3C9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017755 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-28
Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKR-----NKHSPSSSLILNYDGQDDDKASK 60
           MQRQSLGSPVSKLHGHG   +   +  DD KR     +    S+S   +Y  +DD KA+K
Sbjct: 1   MQRQSLGSPVSKLHGHGGQKEESLLVEDDPKRKDLVASSSCSSTSSTADYGYEDDSKAAK 60

Query: 61  SFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIK 120
             R S  +P P R ++ +H IP+LT++CFLIL++FSH+PSQSD+AQF GFK P+  ++  
Sbjct: 61  PRRLS-SSPPPLRPDRCIHLIPVLTLLCFLILFLFSHTPSQSDMAQFKGFKWPANRID-S 120

Query: 121 AEGD-----ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           AE +          +K ++LAI+SLRNL+EI K  + +SR  RK ADF
Sbjct: 121 AENEIGDIGRFSELRKSDVLAIRSLRNLQEIRK-QAPKSRYHRKFADF 165

[Close]

BLAST of Cp4.1LG05g00240 vs. TrEMBL
Match: A0A0D2R731_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183000 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 81/164 (49.39%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSP SKL  HG    S    ++DQKR        +I++    DD K  +  RFS
Sbjct: 1   MQRQSLGSPSSKLRIHGGEESS---VSEDQKRQ-------VIID---DDDSKDIRPRRFS 60

Query: 61  FPTPS----PQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA 120
           F   S    P + EKF+H IP+LT++CFLILY+ SHSPSQSDLA+F+GFK PS+H +  A
Sbjct: 61  FSATSSLTSPPKPEKFIHLIPLLTLLCFLILYLNSHSPSQSDLAEFNGFKHPSKHSDSTA 120

Query: 121 EG--DELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
            G  D  I  ++G++L I+SL+NL+E++K+ S +SR  RK+ADF
Sbjct: 121 IGHVDHFIDSRRGDVLGIRSLKNLQELDKNVS-KSRPHRKIADF 150

[Close]

BLAST of Cp4.1LG05g00240 vs. TrEMBL
Match: A0A061GDU2_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016575 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-27
Identity = 83/168 (49.40%), Postives = 107/168 (63.69%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSP SKLH HG    S A   +D KR         ++  D   D K SK  R S
Sbjct: 1   MQRQSLGSPSSKLHIHGGEESSQA---EDPKRR--------VIIDDDDADRKDSKPRRLS 60

Query: 61  F-PTPSPQ-------RQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHL 120
           F PT SP        + EKF+H IP+LT++CFLILY+ SHSPSQSDLA F+GFK  S+HL
Sbjct: 61  FSPTSSPSSSLTSPPKPEKFIHLIPVLTLLCFLILYLSSHSPSQSDLAHFNGFKHSSKHL 120

Query: 121 EIKAEGD--ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           + +   D    I  ++G++LAI+SLRNL+E++K +  +SR  RK+ADF
Sbjct: 121 DSREISDVGRFIELRRGDVLAIRSLRNLQELDK-YVPKSRPHRKIADF 156

[Close]

BLAST of Cp4.1LG05g00240 vs. TAIR10
Match: AT2G35470.1 (AT2G35470.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-26
Identity = 82/168 (48.81%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSL-ILNYDGQD--DDKASKSF 60
           MQR SL S  SKLH +G G K D    DD K    SPSSS   ++YD  +  D K  +  
Sbjct: 1   MQRISLDSSASKLHSYG-GRKDDTYDIDDLKPASSSPSSSSSAVDYDDHELKDFKPRRLS 60

Query: 61  RFSFP-TPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA 120
               P   + Q+QEK VH IPILT+ICF+ILY+ S++PSQSDLAQF+GF RPS+HLE   
Sbjct: 61  SLQSPFVTTNQKQEKLVHFIPILTLICFIILYLTSYAPSQSDLAQFNGFMRPSKHLESSD 120

Query: 121 E-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRAPRKLADF 159
           E GDE+    + + L+I+ S+RNL+E E    KS   R  + RK ADF
Sbjct: 121 ENGDEISGFIRADTLSIRSSVRNLQETESFTTKSLPRRRTSHRKTADF 167

[Close]

BLAST of Cp4.1LG05g00240 vs. NCBI nr
Match: gi|449436838|ref|XP_004136199.1| (PREDICTED: uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 140/158 (88.61%), Postives = 147/158 (93.04%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
           FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFK PS+ LEIKA+GDE
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEIKADGDE 120

Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           LI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKLADF
Sbjct: 121 LILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 158

[Close]

BLAST of Cp4.1LG05g00240 vs. NCBI nr
Match: gi|659132077|ref|XP_008466005.1| (PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 141/159 (88.68%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA-EGD 120
           FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPS+ LEIKA +G 
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEIKADDGH 120

Query: 121 ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKLADF
Sbjct: 121 ELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF 159

[Close]

BLAST of Cp4.1LG05g00240 vs. NCBI nr
Match: gi|778687861|ref|XP_011652641.1| (PREDICTED: uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 4.0e-70
Identity = 140/159 (88.05%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHL-EIKAEGD 120
           FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFK PS+ L EIKA+GD
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLAEIKADGD 120

Query: 121 ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
           ELI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKLADF
Sbjct: 121 ELILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 159

[Close]

BLAST of Cp4.1LG05g00240 vs. NCBI nr
Match: gi|659132075|ref|XP_008466004.1| (PREDICTED: uncharacterized protein LOC103503567 isoform X1 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 3.4e-69
Identity = 141/160 (88.12%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSSS ILNY GQDDDK+SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHL-EIKA-EG 120
           FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPS+ L EIKA +G
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLAEIKADDG 120

Query: 121 DELIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 159
            ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKLADF
Sbjct: 121 HELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF 160

[Close]

BLAST of Cp4.1LG05g00240 vs. NCBI nr
Match: gi|802563595|ref|XP_012066976.1| (PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 81/167 (48.50%), Postives = 106/167 (63.47%), Query Frame = 1


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDD----KASKS 60
           MQRQSLGSPVSKL+ HG   K D + +D              L+    DDD    KA+K 
Sbjct: 1   MQRQSLGSPVSKLNSHGGAPKEDTLMSDT-------------LSLPAYDDDGGHRKATKP 60

Query: 61  FRFSF----PTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHL 120
            RFS     P+ SP + EK VH IPILT +CFL+LY+ SHSPSQSDL+QF+GFK+  +H+
Sbjct: 61  RRFSMSSSSPSSSPSKPEKLVHFIPILTFLCFLVLYLVSHSPSQSDLSQFNGFKQSLKHI 120

Query: 121 EIKAEGDELIVPKKGNILAIQSLRNLKEI-EKSHSLRSRAPRKLADF 159
           +   +       ++G++LA QSLRNL+EI +K  S +SRA RK+ADF
Sbjct: 121 DSVTDVSGFSELRRGDVLARQSLRNLREIADKRASAKSRAHRKIADF 154

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g00240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g00240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE94_CUCSA	1.1e-71	88.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901050 PE=4 SV=1	[more]
A0A067LDV1_JATCU	9.1e-29	48.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02954 PE=4 SV=1	[more]
W9R3C9_9ROSA	2.6e-28	47.62	Uncharacterized protein OS=Morus notabilis GN=L484_017755 PE=4 SV=1	[more]
A0A0D2R731_GOSRA	1.3e-27	49.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183000 PE=4 SV=1	[more]
A0A061GDU2_THECC	2.2e-27	49.40	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016575 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g00240 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35470.1	4.9e-26	48.81	unknown protein	[more]

BLAST of Cp4.1LG05g00240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436838\|ref\|XP_004136199.1\|	1.6e-71	88.61	PREDICTED: uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]	[more]
gi\|659132077\|ref\|XP_008466005.1\|	1.4e-70	88.68	PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo]	[more]
gi\|778687861\|ref\|XP_011652641.1\|	4.0e-70	88.05	PREDICTED: uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus]	[more]
gi\|659132075\|ref\|XP_008466004.1\|	3.4e-69	88.13	PREDICTED: uncharacterized protein LOC103503567 isoform X1 [Cucumis melo]	[more]
gi\|802563595\|ref\|XP_012066976.1\|	1.3e-28	48.50	PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g00240.1	Cp4.1LG05g00240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35297	FAMILY NOT NAMED	coord: 2..158 score: 2.2
None	No IPR available	PANTHER	PTHR35297:SF2	SUBFAMILY NOT NAMED	coord: 2..158 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g00240	Cucsa.312900	Cucumber (Gy14) v1	cgycpeB0826
Cp4.1LG05g00240	CmaCh19G002200	Cucurbita maxima (Rimu)	cmacpeB543
Cp4.1LG05g00240	CmaCh02G016270	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g00240	CmoCh02G016710	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g00240	CmoCh19G002350	Cucurbita moschata (Rifu)	cmocpeB498
Cp4.1LG05g00240	Cla016235	Watermelon (97103) v1	cpewmB684
Cp4.1LG05g00240	Csa3G901050	Cucumber (Chinese Long) v2	cpecuB717
Cp4.1LG05g00240	MELO3C003431	Melon (DHL92) v3.5.1	cpemeB689
Cp4.1LG05g00240	ClCG09G011720	Watermelon (Charleston Gray)	cpewcgB625
Cp4.1LG05g00240	CSPI03G46480	Wild cucumber (PI 183967)	cpecpiB719
Cp4.1LG05g00240	MELO3C003431.2	Melon (DHL92) v3.6.1	cpemedB821
Cp4.1LG05g00240	CsaV3_3G048920	Cucumber (Chinese Long) v3	cpecucB0894
Cp4.1LG05g00240	Bhi05G000303	Wax gourd	cpewgoB0930
Cp4.1LG05g00240	CsGy3G043930	Cucumber (Gy14) v2	cgybcpeB425
Cp4.1LG05g00240	Carg24537	Silver-seed gourd	carcpeB1346
Cp4.1LG05g00240	Carg08853	Silver-seed gourd	carcpeB1099

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g00240	Cp4.1LG15g01930	Cucurbita pepo (Zucchini)	cpecpeB273

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g00240	Cucurbita pepo (Zucchini)	cpecpeB248
Cp4.1LG05g00240	Cucurbita pepo (Zucchini)	cpecpeB509
Cp4.1LG05g00240	Cucumber (Gy14) v1	cgycpeB0853
Cp4.1LG05g00240	Cucurbita maxima (Rimu)	cmacpeB360
Cp4.1LG05g00240	Cucurbita maxima (Rimu)	cmacpeB842
Cp4.1LG05g00240	Cucurbita moschata (Rifu)	cmocpeB324
Cp4.1LG05g00240	Cucurbita moschata (Rifu)	cmocpeB790
Cp4.1LG05g00240	Wild cucumber (PI 183967)	cpecpiB720
Cp4.1LG05g00240	Cucumber (Chinese Long) v2	cpecuB718
Cp4.1LG05g00240	Bottle gourd (USVL1VR-Ls)	cpelsiB576
Cp4.1LG05g00240	Bottle gourd (USVL1VR-Ls)	cpelsiB630
Cp4.1LG05g00240	Watermelon (Charleston Gray)	cpewcgB631
Cp4.1LG05g00240	Watermelon (97103) v1	cpewmB692
Cp4.1LG05g00240	Melon (DHL92) v3.5.1	cpemeB700
Cp4.1LG05g00240	Cucumber (Gy14) v2	cgybcpeB426
Cp4.1LG05g00240	Melon (DHL92) v3.6.1	cpemedB830
Cp4.1LG05g00240	Silver-seed gourd	carcpeB1336
Cp4.1LG05g00240	Cucumber (Chinese Long) v3	cpecucB0895