Cp4.1LG04g08170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g08170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 3344480 .. 3347273 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCATTCACAACATTCTCCGACACAGCGGGACAACGCGGAGATGATTTCCACCCAAAACCCTCTGCACCATCTCATAGGAAGCCTCCGACGGCGTGGTAAGAGAGAATGTGGATGATCTGGGGATGGATCCGACTGATGCTCTCCAGGATGCAATCGAATCCTCGACTCTTCAATGCGTTGATCTCTCAGGTGGTTTCCGATTGTTTGTGTGAGATGCGTTCCTGGTGAGGCTAGCTCGAGAGATCACCCTTTGGTATCGAGCTTGGAGAAGCTGAAACAATGCGTTGATTGGAAGGATTGAATTAGTGATGAGGATTTTGACGAGATGGCGTTGTTATTTGATAGGATATCAGAGCTGTGTGGATTGAATGTGGAATGGGACATTAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCAAGATTCCGAGTGATTGCGAGCGTGCTGTTGCTTCCGCTTTAAAGGCCATGGGGCTACTACTTCAAGGTACTCTGCGCATACGTCAATTATGGCGATAGGATGATGATCGTAATTGATTTTCTTGAATGAATTTGGTGTTAGGCTATAGCATTACATTAAATTTGTCAATAGAATGTCATGAATATCATATTTGTTTCATTTCGGATCTCCCCTTCATTATGTTAACGAGATCTTGTTTCTTCCTCATGCAAATTATGATCTACAGTATTCTTGGGGTTTATTTTTACTGTCACTCTATTGATTTGCAAGCCACGACTTACATAATTCTGCTACGGCATCAACAATCTGATATCAGTTCCTGTCTCAAATTCCTTGTAAATTTTTGGTACAGGTAATTTCAATTATATCAACGCGTGCCATTGAAGGCAGAGCTGGAGATCTTGCTATTCAAGCTATGCACAAGTTCTCTTCAGCTCAACTAATGCAAAGGGACTCGCGTGTCACTTGATACGAGTCCTGTAGTCAGGAACCCACTGTATAGGGCTCTCTCAAACTATTTTCTTACATGTCTCTTACTATTTTCTATTGATATTAGCACTGCATATCTTAAGCTATTCTTCATTGATGTTAGCATTACATGTTTCAAAACTATTCTCCATTGATGTTAGCAGCATTACATGTCTCAAACTATTGTGAGTTAAGATGGTGAAGTTGAAATATCTCAACGCTCCAATCAACCATAGAGAATCAAAACGAGTGTTTTTTTCCCCTTGGAAGTTCTTATTTCATAGCATTTCAGGGGCCAAGCCACCATATTTTGCGCCATAGAAAATGCCTCTGAATTAAACTATATAGGTCTATACCCTTGGGTATGTATGGTGCAACAATTGCCTGCCCCGCCCTGCCCTACGTCCTACTTAAACTAGCACACTAGGCAAAGGAAACCCGGTAGTTACAAGAACCTACATGTATGTAGCAAATATACTTGCCAGTTAGCCCTGTTTTGGAGATATTTCACCATGCCTTTTGTCAGTGTGAAGAAACTAGAAAGTTGGGACTTTTTGGAGTGTTGTTTTAGGTATGATTCTGAGACGTACGAGTAAAGTTAAAACAGGAATCTATCAGCCATTGATAAATGTAGAAACTAGGAAGAAATGAAAGGACATTAACAGGTGAAGGAGGTCCCCCACCTTGGTCTTGTCTTTGTCATTCCTGTGGGATCCAAAGCCAACCCCACAAGAAACAACCTTCAATCTCCTAATAAATACGTTATTTGATGTGACATTTCATAATAATAATAATAATACAAGTAACACAACAGCAAAAATTTTAAAACCCTGCTCAGAAAAGGGGGAAAAAGAACCATAATGATTTCTAGATTCAGACCAGCCTAAAGTTTTCTCTGTAGAACATCCAAATTTCATGAAAATTTAAAAAGAGGAATAAAAGACAACAAATAATGTATATTTTAACCTCAGGTTATTTCATCTGGACAAAATTGTTTGAATGGAGTGTTTCATCCAGCTTTAACATCTTAAAACACCAGTGCACTAACGACCCTCGGTCATCAAAGTATCGATTGATCTCGTGCAGGTGAAACTGTGTATGAAATCTAGCTCTCTACTCCATAACCTTGATTGAAGATGAATAAAAGGAAAAGACTATCAGCCAAAGCATGATATATAGAATGAACAAGCAAACGATGTTGCAGGTAATAATCTGAAAAACCCCACATACCCATCATAGCTACTGGAACATCTTGCTATATGCTTTTCTTTCTTGATTACGTCTGTCGACAATCTGCATCAAATACCACACAAACCCGTCGTTCAATACACGTGTCACCTCAACCATAGAATTTACTTTCATTACCTTTTTCCTTGCAGCAGCGAGCTCTTTCTTTATTGCAGCTGAAACTCGAAAAAGTAGCGAGTCATTAGCAAAGTTCAAAACACAACAGAGGATTAAACATACAACAAAAGTTGAATGTTCGTCATATCAAGAACTAGAAAATCATATCTACGTCTTCGAGGATGGATGATCCCATTCGAAGAACAATACAACTTCGATTTAAAGGATTTTCAAGCAATCCAATCCAATTGAAGATCTTCTCCTCCAATCTCTCTCCCTCTCCATATGGGTCAGTTTTCAGCAACACATACTCGAAACTCAGAGAAAGACCATGTTCTAGACAACATTTCATAGCAGAGAAGAGAGGCTTCTTCAAGAATATTGCCAATAACACCAATAAAATAAGGGGAGGAAATGTCCAAACCCCTCTTGGTTTTCAATTTCAGACTACTGATTGACTCCAGTATGATATGAGATGGTTAGTTTTCAAATCCTAACATCTTCCTT

mRNA sequence

ACCATTCACAACATTCTCCGACACAGCGGGACAACGCGGAGATGATTTCCACCCAAAACCCTCTGCACCATCTCATAGGAAGCCTCCGACGGCGTGGTAAGAGAGAATGTGGATGATCTGGGGATGGATCCGACTGATGCTCTCCAGGATGCAATCGAATCCTCGACTCTTCAATGCGTTGATCTCTCAGGTGGTTTCCGATTGTTTGTGTGAGATGCGTTCCTGGTGAGGCTAGCTCGAGAGATCACCCTTTGGTATCGAGCTTGGAGAAGCTGAAACAATGCGTTGATTGGAAGGATTGAATTAGTGATGAGGATTTTGACGAGATGGCGTTGTTATTTGATAGGATATCAGAGCTGTGTGGATTGAATGTGGAATGGGACATTAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCAAGATTCCGAGTGATTGCGAGCGTGCTGTTGCTTCCGCTTTAAAGGCCATGGGGCTACTACTTCAAGGCTATAGCATTACATTAAATTTGTCAATAGAATGTCATGAATATCATATTTGTTTCATTTCGGATCTCCCCTTCATTATGTTAACGAGATCTTGTTTCTTCCTCATGCAAATTATGATCTACAGTATTCTTGGGGTAATTTCAATTATATCAACGCGTGCCATTGAAGGCAGAGCTGGAGATCTTGCTATTCAAGCTATGCACAAGTTCTCTTCAGCTCAACTAATGCAAAGGGACTCGCGTGTCACTTGATACGAGTCCTGTAGTCAGGAACCCACTGTATAGGGCTCTCTCAAACTATTTTCTTACATGTCTCTTACTATTTTCTATTGATATTAGCACTGCATATCTTAAGCTATTCTTCATTGATGTTAGCATTACATGTTTCAAAACTATTCTCCATTGATGTTAGCAGCATTACATGTCTCAAACTATTGTGAGTTAAGATGGTGAAGTTGAAATATCTCAACGCTCCAATCAACCATAGAGAATCAAAACGAGTGTTTTTTTCCCCTTGGAAGTTCTTATTTCATAGCATTTCAGGGGCCAAGCCACCATATTTTGCGCCATAGAAAATGCCTCTGAATTAAACTATATAGGTCTATACCCTTGGGTATGTATGGTGCAACAATTGCCTGCCCCGCCCTGCCCTACGTCCTACTTAAACTAGCACACTAGGCAAAGGAAACCCGGTAGTTACAAGAACCTACATGTATGTAGCAAATATACTTGCCAGTTAGCCCTGTTTTGGAGATATTTCACCATGCCTTTTGTCAGTGTGAAGAAACTAGAAAGTTGGGACTTTTTGGAGTGTTGTTTTAGGTATGATTCTGAGACGTACGAGTAAAGTTAAAACAGGAATCTATCAGCCATTGATAAATGTAGAAACTAGGAAGAAATGAAAGGACATTAACAGGTGAAGGAGGTCCCCCACCTTGGTCTTGTCTTTGTCATTCCTGTGGGATCCAAAGCCAACCCCACAAGAAACAACCTTCAATCTCCTAATAAATACGTTATTTGATGTGACATTTCATAATAATAATAATAATACAAGTAACACAACAGCAAAAATTTTAAAACCCTGCTCAGAAAAGGGGGAAAAAGAACCATAATGATTTCTAGATTCAGACCAGCCTAAAGTTTTCTCTGTAGAACATCCAAATTTCATGAAAATTTAAAAAGAGGAATAAAAGACAACAAATAATGTATATTTTAACCTCAGGTTATTTCATCTGGACAAAATTGTTTGAATGGAGTGTTTCATCCAGCTTTAACATCTTAAAACACCAGTGCACTAACGACCCTCGGTCATCAAAGTATCGATTGATCTCGTGCAGGTGAAACTGTGTATGAAATCTAGCTCTCTACTCCATAACCTTGATTGAAGATGAATAAAAGGAAAAGACTATCAGCCAAAGCATGATATATAGAATGAACAAGCAAACGATGTTGCAGGTAATAATCTGAAAAACCCCACATACCCATCATAGCTACTGGAACATCTTGCTATATGCTTTTCTTTCTTGATTACGTCTGTCGACAATCTGCATCAAATACCACACAAACCCGTCGTTCAATACACGTGTCACCTCAACCATAGAATTTACTTTCATTACCTTTTTCCTTGCAGCAGCGAGCTCTTTCTTTATTGCAGCTGAAACTCGAAAAAGTAGCGAGTCATTAGCAAAGTTCAAAACACAACAGAGGATTAAACATACAACAAAAGTTGAATGTTCGTCATATCAAGAACTAGAAAATCATATCTACGTCTTCGAGGATGGATGATCCCATTCGAAGAACAATACAACTTCGATTTAAAGGATTTTCAAGCAATCCAATCCAATTGAAGATCTTCTCCTCCAATCTCTCTCCCTCTCCATATGGGTCAGTTTTCAGCAACACATACTCGAAACTCAGAGAAAGACCATGTTCTAGACAACATTTCATAGCAGAGAAGAGAGGCTTCTTCAAGAATATTGCCAATAACACCAATAAAATAAGGGGAGGAAATGTCCAAACCCCTCTTGGTTTTCAATTTCAGACTACTGATTGACTCCAGTATGATATGAGATGGTTAGTTTTCAAATCCTAACATCTTCCTT

Coding sequence (CDS)

ATGTGGAATGGGACATTAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCAAGATTCCGAGTGATTGCGAGCGTGCTGTTGCTTCCGCTTTAAAGGCCATGGGGCTACTACTTCAAGGCTATAGCATTACATTAAATTTGTCAATAGAATGTCATGAATATCATATTTGTTTCATTTCGGATCTCCCCTTCATTATGTTAACGAGATCTTGTTTCTTCCTCATGCAAATTATGATCTACAGTATTCTTGGGGTAATTTCAATTATATCAACGCGTGCCATTGAAGGCAGAGCTGGAGATCTTGCTATTCAAGCTATGCACAAGTTCTCTTCAGCTCAACTAATGCAAAGGGACTCGCGTGTCACTTGA

Protein sequence

MWNGTLIALRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQGYSITLNLSIECHEYHICFISDLPFIMLTRSCFFLMQIMIYSILGVISIISTRAIEGRAGDLAIQAMHKFSSAQLMQRDSRVT
Homology
[Close]
BLAST of Cp4.1LG04g08170 vs. NCBI nr
Match: gi|659109856|ref|XP_008454917.1| (PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 31/38 (81.58%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 7   IALRNGGLELLCYLRSKIPSDCERAVASALKAMGLLLQ 45
           IALRNGGLELLC L  KIPSDCE AVAS LK M LLLQ
Sbjct: 114 IALRNGGLELLCSLCYKIPSDCEPAVASGLKTMVLLLQ 151

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g08170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g08170 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g08170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g08170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109856|ref|XP_008454917.1|7.3e-0681.58PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08170.1Cp4.1LG04g08170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g08170CmaCh11G017640Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g08170CmoCh11G013480Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g08170CsaV3_7G008780Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g08170Bhi05G001008Wax gourdcpewgoB0855
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g08170Cucumber (Gy14) v1cgycpeB0222
Cp4.1LG04g08170Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g08170Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g08170Cucurbita maxima (Rimu)cmacpeB884
Cp4.1LG04g08170Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g08170Cucurbita moschata (Rifu)cmocpeB822
Cp4.1LG04g08170Wild cucumber (PI 183967)cpecpiB671
Cp4.1LG04g08170Wild cucumber (PI 183967)cpecpiB689
Cp4.1LG04g08170Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g08170Cucumber (Chinese Long) v2cpecuB668
Cp4.1LG04g08170Cucumber (Chinese Long) v2cpecuB686
Cp4.1LG04g08170Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g08170Bottle gourd (USVL1VR-Ls)cpelsiB525
Cp4.1LG04g08170Bottle gourd (USVL1VR-Ls)cpelsiB533
Cp4.1LG04g08170Bottle gourd (USVL1VR-Ls)cpelsiB536
Cp4.1LG04g08170Watermelon (Charleston Gray)cpewcgB588
Cp4.1LG04g08170Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g08170Watermelon (97103) v1cpewmB663
Cp4.1LG04g08170Watermelon (97103) v1cpewmB665
Cp4.1LG04g08170Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g08170Melon (DHL92) v3.5.1cpemeB644
Cp4.1LG04g08170Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g08170Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g08170Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g08170Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g08170Melon (DHL92) v3.6.1cpemedB772
Cp4.1LG04g08170Silver-seed gourdcarcpeB0296
Cp4.1LG04g08170Cucumber (Chinese Long) v3cpecucB0835
Cp4.1LG04g08170Cucumber (Chinese Long) v3cpecucB0857
Cp4.1LG04g08170Wax gourdcpewgoB0864
Cp4.1LG04g08170Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g08170Cucurbita pepo (Zucchini)cpecpeB417
Cp4.1LG04g08170Cucurbita pepo (Zucchini)cpecpeB500