CmaCh11G017640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G017640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 11786780 .. 11787763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGATTGATGCTCTCCAGGATGCAATCGAATCCTTAACTCTTCAATGCGTTGATCTCTCAGGTGATTTCCGATTGTTTGTGTGAGATGCGTTCCTGGTCAGGCTAGCTCGAGAGATCACCCTTTGGTACCGAGCTTGGAGAAGCTGAAACAATTGGACGTTGATTGAGGATTTTGATAGGATATCAGAGCTGTGTGGATTGAATGAGGAATGGGCCATAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCGAGATTCCGAGTGATTGCGAGCGTGCCGTTGCTTCCGCTTTAAAGGCTATGGGGGCTACTACTTCAAGGTACTGCGCATACTTCAATTATGGAGATAGGATGATGATCGTAATTGATTTTCTTGAATGAATTTGGTGTTAGGCTATAGCATTACATTAAATTTGTCAATAGAATGTCATGAATATCATATTTGTTTCATTTCGGTTCTCCCCTTCATTATGTGAACGAGGTTTTGTTCCTTCCTCATGCAAACTATGATCTACAGTATCCTTGAGGTTTATTTTTACTGTCACTCTATTGATTTGCAAGCCACGACTTACATAATTCTGCTATGGCATCAACAATCTGATATCAATTCCTGTCTCAAATTCCTTGTAAATTTTTGGTACAGGTAATGTCAATTATATCAACGCGTGCCATTGAAGGCAAAGCTGGAGATCTTGCTATTCAAGCTATGCAGAAGTTCCCTTCACCTCAACTAATGCAAAGGGGCTCGCGTGTCACTTGATACGAGTCCTGTAGTCAGGAACCCACTGTACAGGGCTCTCTCAAACTATTTTCTTACATGTCTCTTACTATATTCTATTGATATTAGCACTGCATATCTTAAGCTATTCTTCATTAATGTTAGCAATCACATGTTTCAAAACTATTCTCCATTGATGTTAGCAGCATTACATGTTTCAAATTATTGTGAGTTAAGATGGTGAA

mRNA sequence

ATGGATCCGATTGATGCTCTCCAGGATGCAATCGAATCCTTAACTCTTCAATGCGTTGATCTCTCAGAGCTGTGTGGATTGAATGAGGAATGGGCCATAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCGAGATTCCGAGTGATTGCGAGCGTGCCGTTGCTTCCGCTTTAAAGGCTATGGGGGCTACTACTTCAAGGTAATGTCAATTATATCAACGCGTGCCATTGAAGGCAAAGCTGGAGATCTTGCTATTCAAGCTATGCAGAAGTTCCCTTCACCTCAACTAATGCAAAGGGGCTCGCGTGTCACTTGATACGAGTCCTGTAGTCAGGAACCCACTGTACAGGGCTCTCTCAAACTATTTTCTTACATGTCTCTTACTATATTCTATTGATATTAGCACTGCATATCTTAAGCTATTCTTCATTAATGTTAGCAATCACATGTTTCAAAACTATTCTCCATTGATGTTAGCAGCATTACATGTTTCAAATTATTGTGAGTTAAGATGGTGAA

Coding sequence (CDS)

ATGGATCCGATTGATGCTCTCCAGGATGCAATCGAATCCTTAACTCTTCAATGCGTTGATCTCTCAGAGCTGTGTGGATTGAATGAGGAATGGGCCATAATTGCGTTAAGAAATGGGGGATTGGAATTGCTCTGTTATCTCCGTTCCGAGATTCCGAGTGATTGCGAGCGTGCCGTTGCTTCCGCTTTAAAGGCTATGGGGGCTACTACTTCAAGGTAA

Protein sequence

MDPIDALQDAIESLTLQCVDLSELCGLNEEWAIIALRNGGLELLCYLRSEIPSDCERAVASALKAMGATTSR

Homology

[Close]

BLAST of CmaCh11G017640 vs. TrEMBL
Match: A0A0A0K4T9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074820 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-07
Identity = 48/119 (40.34%), Postives = 54/119 (45.38%), Query Frame = 1


Query: 1   MDPIDALQDAIESLTLQCVDLS-------------------------------------- 60
           MDP +ALQDAIE+LTLQ VDLS                                      
Sbjct: 28  MDPTEALQDAIETLTLQGVDLSGIVRCVPGEGSARDNPLIQSLERLKQLDGDSKDKISDQ 87

Query: 61  -------------ELCGLNEEW--AIIALRNGGLELLCYLRSEIPSDCERAVASALKAM 67
                        +LCG  +E   A IALRNGGLELLC L  +IPSDCE AV S+LK M
Sbjct: 88  FVDEIVVLFDRISDLCGSTQESGNASIALRNGGLELLCSLCYKIPSDCEPAVVSSLKTM 146

[Close]

BLAST of CmaCh11G017640 vs. NCBI nr
Match: gi|659109856|ref|XP_008454917.1| (PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 8.9e-09
Identity = 51/119 (42.86%), Postives = 55/119 (46.22%), Query Frame = 1


Query: 1   MDPIDALQDAIESLTLQCVDLS-------------------------------------- 60
           MDP +ALQDAIE+LTLQ VDLS                                      
Sbjct: 28  MDPTEALQDAIETLTLQGVDLSGIVRCVPGEGSARDNPLIQSLERLKQLDDDSKDKISDQ 87

Query: 61  -------------ELCGLNEEW--AIIALRNGGLELLCYLRSEIPSDCERAVASALKAM 67
                        ELCG N+E   A IALRNGGLELLC L  +IPSDCE AVAS LK M
Sbjct: 88  FVDEIVVLFDRISELCGSNQESGNASIALRNGGLELLCSLCYKIPSDCEPAVASGLKTM 146

[Close]

BLAST of CmaCh11G017640 vs. NCBI nr
Match: gi|449438432|ref|XP_004136992.1| (PREDICTED: armadillo repeat-containing protein 6 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-07
Identity = 48/119 (40.34%), Postives = 54/119 (45.38%), Query Frame = 1


Query: 1   MDPIDALQDAIESLTLQCVDLS-------------------------------------- 60
           MDP +ALQDAIE+LTLQ VDLS                                      
Sbjct: 28  MDPTEALQDAIETLTLQGVDLSGIVRCVPGEGSARDNPLIQSLERLKQLDGDSKDKISDQ 87

Query: 61  -------------ELCGLNEEW--AIIALRNGGLELLCYLRSEIPSDCERAVASALKAM 67
                        +LCG  +E   A IALRNGGLELLC L  +IPSDCE AV S+LK M
Sbjct: 88  FVDEIVVLFDRISDLCGSTQESGNASIALRNGGLELLCSLCYKIPSDCEPAVVSSLKTM 146

The following BLAST results are available for this feature:

BLAST of CmaCh11G017640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G017640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4T9_CUCSA	1.5e-07	40.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074820 PE=4 SV=1	[more]

BLAST of CmaCh11G017640 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G017640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109856\|ref\|XP_008454917.1\|	8.9e-09	42.86	PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo]	[more]
gi\|449438432\|ref\|XP_004136992.1\|	2.2e-07	40.34	PREDICTED: armadillo repeat-containing protein 6 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G017640.1	CmaCh11G017640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G017640	Cla015995	Watermelon (97103) v1	cmawmB127
CmaCh11G017640	ClCG02G005750	Watermelon (Charleston Gray)	cmawcgB101
CmaCh11G017640	CmoCh11G013480	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G017640	CmoCh19G006380	Cucurbita moschata (Rifu)	cmacmoB143
CmaCh11G017640	Lsi11G010240	Bottle gourd (USVL1VR-Ls)	cmalsiB092
CmaCh11G017640	Cp4.1LG04g08170	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G017640	MELO3C018434.2	Melon (DHL92) v3.6.1	cmamedB106
CmaCh11G017640	CsaV3_7G008780	Cucumber (Chinese Long) v3	cmacucB0171
CmaCh11G017640	Cla97C02G032710	Watermelon (97103) v2	cmawmbB104
CmaCh11G017640	Bhi05G001008	Wax gourd	cmawgoB0118
CmaCh11G017640	Carg22052	Silver-seed gourd	carcmaB0287

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G017640	CmaCh19G006200	Cucurbita maxima (Rimu)	cmacmaB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G017640	Cucurbita moschata (Rifu)	cmacmoB161
CmaCh11G017640	Wild cucumber (PI 183967)	cmacpiB115
CmaCh11G017640	Wild cucumber (PI 183967)	cmacpiB141
CmaCh11G017640	Wild cucumber (PI 183967)	cmacpiB143
CmaCh11G017640	Cucumber (Chinese Long) v2	cmacuB118
CmaCh11G017640	Cucumber (Chinese Long) v2	cmacuB144
CmaCh11G017640	Cucumber (Chinese Long) v2	cmacuB146
CmaCh11G017640	Melon (DHL92) v3.5.1	cmameB098
CmaCh11G017640	Melon (DHL92) v3.5.1	cmameB144
CmaCh11G017640	Watermelon (Charleston Gray)	cmawcgB081
CmaCh11G017640	Watermelon (Charleston Gray)	cmawcgB096
CmaCh11G017640	Watermelon (97103) v1	cmawmB082
CmaCh11G017640	Watermelon (97103) v1	cmawmB117
CmaCh11G017640	Cucurbita pepo (Zucchini)	cmacpeB116
CmaCh11G017640	Cucurbita pepo (Zucchini)	cmacpeB138
CmaCh11G017640	Bottle gourd (USVL1VR-Ls)	cmalsiB105
CmaCh11G017640	Bottle gourd (USVL1VR-Ls)	cmalsiB087
CmaCh11G017640	Cucumber (Gy14) v2	cgybcmaB161
CmaCh11G017640	Cucumber (Gy14) v2	cgybcmaB895
CmaCh11G017640	Melon (DHL92) v3.6.1	cmamedB157
CmaCh11G017640	Silver-seed gourd	carcmaB1115
CmaCh11G017640	Cucumber (Chinese Long) v3	cmacucB0134
CmaCh11G017640	Cucumber (Chinese Long) v3	cmacucB0166
CmaCh11G017640	Watermelon (97103) v2	cmawmbB091
CmaCh11G017640	Watermelon (97103) v2	cmawmbB155
CmaCh11G017640	Cucurbita maxima (Rimu)	cmacmaB171
CmaCh11G017640	Cucumber (Gy14) v1	cgycmaB0221
CmaCh11G017640	Cucumber (Gy14) v1	cgycmaB0620