Cp4.1LG04g07730 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 3921315 .. 3922256 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCTATCGAAGAATGTTGGATGCTGGGTTCGCTCCCGATCTGCTGATGTACAATACCGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGGTGTAAACCTAATGAGTTAACGTATTGTTCTTTACTTCATGCTTATGCCAATGGCAAAGAGATCCGGCGGATGTCTGCACTTGCTGAGGAAATCTATGCCAGCATTATTGAACCTCAAGCTGTGCTTTTGAAGACATTGGTTTTGGTTTATAGTAAAAGGGATCTTTTGATGGAGACCGAGCGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTTGGAGAAGGATGGTTTTGAAAACGAATGAAATTTTAAACTTCATGAAGGATAGCGGTTATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTAGACAAGTCGGAGGAGATTTTGAGGGAAATTATTGAGAAAGGAATAAAGCCTGATATCATTTTGTTTAATACCGTAATTTTCGCCTATTGTCGGAATGGTCAAATGAAAGAGGCGTCGAGGATATTTGCTGAAATGAAGGATTTCGGGCTTGTCCCAAACGTAATTACGTATAATGCCTTCAATGCAAGCTATTCTGCTGACTCGATGTTTGTAGAGGCGATTGATGTGGTGAGCTATACGATCAAGAATGGATGTAAGCCTAATCCGAACACATACAACTCTCTAGTAGACTCGTTTTGTAAACTAAATCACTGGGAGGATGCAAATAGTTTCGTCTCAAACCTTTGCAATCTCAACCCACACATAACGAAAGAAGAGAAACGCAGGTTGCTGAAGCATATAAAGCAAGAAAAGAAATGGTCATAG

mRNA sequence

ATGGCTATCTATCGAAGAATGTTGGATGCTGGGTTCGCTCCCGATCTGCTGATGTACAATACCGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGGTGTAAACCTAATGAGTTAACGTATTGTTCTTTACTTCATGCTTATGCCAATGGCAAAGAGATCCGGCGGATGTCTGCACTTGCTGAGGAAATCTATGCCAGCATTATTGAACCTCAAGCTGTGCTTTTGAAGACATTGGTTTTGGTTTATAGTAAAAGGGATCTTTTGATGGAGACCGAGCGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTTGGAGAAGGATGGTTTTGAAAACGAATGAAATTTTAAACTTCATGAAGGATAGCGGTTATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTAGACAAGTCGGAGGAGATTTTGAGGGAAATTATTGAGAAAGGAATAAAGCCTGATATCATTTTGTTTAATACCGTAATTTTCGCCTATTGTCGGAATGGTCAAATGAAAGAGGCGTCGAGGATATTTGCTGAAATGAAGGATTTCGGGCTTGTCCCAAACGTAATTACGTATAATGCCTTCAATGCAAGCTATTCTGCTGACTCGATGTTTGTAGAGGCGATTGATGTGGTGAGCTATACGATCAAGAATGGATGTAAGCCTAATCCGAACACATACAACTCTCTAGTAGACTCGTTTTGTAAACTAAATCACTGGGAGGATGCAAATAGTTTCGTCTCAAACCTTTGCAATCTCAACCCACACATAACGAAAGAAGAGAAACGCAGGTTGCTGAAGCATATAAAGCAAGAAAAGAAATGGTCATAG

Coding sequence (CDS)

ATGGCTATCTATCGAAGAATGTTGGATGCTGGGTTCGCTCCCGATCTGCTGATGTACAATACCGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGGTGTAAACCTAATGAGTTAACGTATTGTTCTTTACTTCATGCTTATGCCAATGGCAAAGAGATCCGGCGGATGTCTGCACTTGCTGAGGAAATCTATGCCAGCATTATTGAACCTCAAGCTGTGCTTTTGAAGACATTGGTTTTGGTTTATAGTAAAAGGGATCTTTTGATGGAGACCGAGCGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTTGGAGAAGGATGGTTTTGAAAACGAATGAAATTTTAAACTTCATGAAGGATAGCGGTTATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTAGACAAGTCGGAGGAGATTTTGAGGGAAATTATTGAGAAAGGAATAAAGCCTGATATCATTTTGTTTAATACCGTAATTTTCGCCTATTGTCGGAATGGTCAAATGAAAGAGGCGTCGAGGATATTTGCTGAAATGAAGGATTTCGGGCTTGTCCCAAACGTAATTACGTATAATGCCTTCAATGCAAGCTATTCTGCTGACTCGATGTTTGTAGAGGCGATTGATGTGGTGAGCTATACGATCAAGAATGGATGTAAGCCTAATCCGAACACATACAACTCTCTAGTAGACTCGTTTTGTAAACTAAATCACTGGGAGGATGCAAATAGTTTCGTCTCAAACCTTTGCAATCTCAACCCACACATAACGAAAGAAGAGAAACGCAGGTTGCTGAAGCATATAAAGCAAGAAAAGAAATGGTCATAG

Protein sequence

MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKRRLLKHIKQEKKWS
Homology
[Close]
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.2e-119
Identity = 215/312 (68.91%), Postives = 258/312 (82.69%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M +YRRMLDAG  PDL  YNTVLAALARGG+WEQSE VLAEM++GRCKPNELTYCSLLHA
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKEI  M +LAEE+Y+ +IEP+AVLLKTLVLV SK DLL E ERAF EL++ GFSPD
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLN+MVSIYG R+MV K N +L++MK+ G+TPS+ TYNSLMYM+SRS +  KSEEILR
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EI+ KGIKPDII +NTVI+AYCRN +M++ASRIF+EM++ G+VP+VITYN F  SY+ADS
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF EAI VV Y IK+GC+PN NTYNS+VD +CKLN  ++A  FV +L NL+PH  K E  
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDL 808

Query: 301 RLLKHIKQEKKW 313
           RLL+ I   KKW
Sbjct: 809 RLLERI--VKKW 818

[Close]
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-53
Identity = 114/306 (37.25%), Postives = 172/306 (56.21%), Query Frame = 1 

Query: 3   IYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYA 62
           +Y  M  AGF   +  YN +L ALAR G W   E V+++MK+   KP E +Y  +L  YA
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572

Query: 63  NGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLR 122
            G     +  +   I    I P  +LL+TL+L   K   L  +ERAF   +KHG+ PD+ 
Sbjct: 573 KGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMV 632

Query: 123 TLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREI 182
             N+M+SI+    M  +   IL  +++ G +P L TYNSLM MY R     K+EEIL+ +
Sbjct: 633 IFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTL 692

Query: 183 IEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMF 242
            +  +KPD++ +NTVI  +CR G M+EA R+ +EM + G+ P + TYN F + Y+A  MF
Sbjct: 693 EKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMF 752

Query: 243 VEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKRRL 302
            E  DV+    KN C+PN  T+  +VD +C+   + +A  FVS +   +P    +  +RL
Sbjct: 753 AEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRL 812

Query: 303 LKHIKQ 309
              +++
Sbjct: 813 ALRVRE 818

[Close]
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-30
Identity = 75/280 (26.79%), Postives = 132/280 (47.14%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M + + M + G APD+  YN+++  L++    +++   L EM     KPN  TY + +  
Sbjct: 472 MRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           Y    E        +E+    + P  VL   L+  Y K+  ++E   A+  +   G   D
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGD 591

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
            +T   +++       V    EI   M+  G  P + +Y  L+  +S+  N+ K+  I  
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           E++E+G+ P++I++N ++  +CR+G++++A  +  EM   GL PN +TY      Y    
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDA 281
              EA  +       G  P+   Y +LVD  C+LN  E A
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751

[Close]
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-30
Identity = 74/277 (26.71%), Postives = 146/277 (52.71%), Query Frame = 1 

Query: 11  GFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGKEIRRM 70
           G++ D + YNT++    + G + Q+ ++ AEM      P+ +TY SL+H+      + R 
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364

Query: 71  SALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLNAMVSI 130
               +++    + P      TLV  +S++  + E  R   E+  +GFSP + T NA+++ 
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424

Query: 131 YGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEKGIKPD 190
           +     +     +L  MK+ G +P + +Y++++  + RS ++D++  + RE++EKGIKPD
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484

Query: 191 IILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEAIDVVS 250
            I ++++I  +C   + KEA  ++ EM   GL P+  TY A   +Y  +    +A+ + +
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544

Query: 251 YTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNL 288
             ++ G  P+  TY+ L++   K +   +A   +  L
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

[Close]
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match: PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-29
Identity = 68/268 (25.37%), Postives = 133/268 (49.63%), Query Frame = 1 

Query: 6   RMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGK 65
           +M++ G  PD   YNT++A   +GG+ + +E ++ +       P++ TY SL+    +  
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370

Query: 66  EIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLN 125
           E  R  AL  E     I+P  +L  TL+   S + +++E  +   E+ + G  P+++T N
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430

Query: 126 AMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEK 185
            +V+       V   + ++  M   GY P + T+N L++ YS    ++ + EIL  +++ 
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490

Query: 186 GIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEA 245
           G+ PD+  +N+++   C+  + ++    +  M + G  PN+ T+N    S        EA
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550

Query: 246 IDVVSYTIKNGCKPNPNTYNSLVDSFCK 274
           + ++         P+  T+ +L+D FCK
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCK 578

[Close]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match: A0A0A0K4H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 3.3e-139
Identity = 252/313 (80.51%), Postives = 280/313 (89.46%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           MAIYRRMLDAG  PDL  YN VLAALARGGLWEQSE VLAEMK+GRCKPNELTYCSLLHA
Sbjct: 521 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHA 580

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKE+ RMSALAEEIY+ IIEPQAVLLKTLVLVYSK DLL ETERAF ELR+ GFSPD
Sbjct: 581 YANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG RRMV KTNEILNF+KDSG+TPSLTTYNSLMYMYSR+E+ +KSE+ILR
Sbjct: 641 ITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EII KG+KPDII FNTVIFAYCRNG+MKEASRIFAEMKDFGL P+VITYN F ASY++DS
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF+EAIDVV Y IKNGCKPN NTYNSL+D FCKLN  ++A+SF+SNL NL+P +TK+E+R
Sbjct: 761 MFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEER 820

Query: 301 RLLKHIKQEKKWS 314
           RLL+ +   KKWS
Sbjct: 821 RLLERL--NKKWS 831

[Close]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match: A0A061E043_THECC (Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007183 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 6.4e-127
Identity = 229/313 (73.16%), Postives = 272/313 (86.90%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M++Y+RML+AG  PDL  YN VLAALARGGLW+QSE +LAEMK+GRCKPNELTYCSLLH 
Sbjct: 508 MSVYKRMLEAGVTPDLSTYNAVLAALARGGLWKQSEKILAEMKDGRCKPNELTYCSLLHV 567

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGK++ RM ALAEEIY+ IIEP AVLLKTLVLV SK DLL+ETERAF ELRK GFSPD
Sbjct: 568 YANGKQVDRMHALAEEIYSGIIEPHAVLLKTLVLVNSKCDLLVETERAFSELRKKGFSPD 627

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG R+MV KTNEIL FM +SG+TPSLTTYNSLMYMYSRSEN ++SE++LR
Sbjct: 628 ITTLNAMVSIYGRRQMVSKTNEILTFMNESGFTPSLTTYNSLMYMYSRSENFEESEKVLR 687

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           E++ KGIKPDII +NTVI+AYCRNG+MKEASRIF+EM + GL+P+VITYN F ASY+AD+
Sbjct: 688 EVLAKGIKPDIISYNTVIYAYCRNGRMKEASRIFSEMGNSGLMPDVITYNTFVASYAADT 747

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF EAIDVV Y IK+GCKPN NTYNS+VD +CKLNH ++A++FV+NL  L+PHI+KEE+ 
Sbjct: 748 MFEEAIDVVRYMIKHGCKPNQNTYNSIVDGYCKLNHQDEASTFVNNLQKLDPHISKEEEI 807

Query: 301 RLLKHIKQEKKWS 314
           RL + I +  KWS
Sbjct: 808 RLSERIVE--KWS 818

[Close]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match: V4RNZ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030402mg PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-125
Identity = 226/313 (72.20%), Postives = 267/313 (85.30%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M+IY+RML+AG  PDL  YN VLAALARGG+WEQSE + AEMK GRCKPNELTY SLLHA
Sbjct: 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANG+EI +M AL+EEIY+ IIEP AVLLKTL+LVYSK DLLM+TERAF EL+K GFSPD
Sbjct: 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD 628

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAM+SIYG R+MV KTNEIL+FM DSG+TPSLTTYN+LMYMYSRSEN  ++E++LR
Sbjct: 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EI+ KGIKPDII +NTVIFAYCRNG+MKEASRIF+EM+D GLVP+VITYN F ASY+ADS
Sbjct: 689 EILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           +FVEA+DVV Y IK GCKPN NTYNS+VD +CKLN   +A +FV+NL  L+PH+TKE + 
Sbjct: 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 808

Query: 301 RLLKHIKQEKKWS 314
           +L   I   KKW+
Sbjct: 809 KLSDRI--AKKWT 819

[Close]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match: A0A067EVB9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-125
Identity = 226/313 (72.20%), Postives = 267/313 (85.30%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M+IY+RML+AG  PDL  YN VLAALARGG+WEQSE + AEMK GRCKPNELTY SLLHA
Sbjct: 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANG+EI +M AL+EEIY+ IIEP AVLLKTL+LVYSK DLLM+TERAF EL+K GFSPD
Sbjct: 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD 628

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAM+SIYG R+MV KTNEIL+FM DSG+TPSLTTYN+LMYMYSRSEN  ++E++LR
Sbjct: 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EI+ KGIKPDII +NTVIFAYCRNG+MKEASRIF+EM+D GLVP+VITYN F ASY+ADS
Sbjct: 689 EILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           +FVEA+DVV Y IK GCKPN NTYNS+VD +CKLN   +A +FV+NL  L+PH+TKE + 
Sbjct: 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 808

Query: 301 RLLKHIKQEKKWS 314
           +L   I   KKW+
Sbjct: 809 KLSDRI--AKKWT 819

[Close]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match: A0A0D2SM99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G233300 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 5.1e-124
Identity = 225/313 (71.88%), Postives = 265/313 (84.66%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           MAIY+RML+AG  PDL  YN VLAALARGGLW+QSE +LAEM++GRCKPNELTYCSLLH 
Sbjct: 506 MAIYKRMLEAGVTPDLSTYNAVLAALARGGLWKQSEKILAEMRDGRCKPNELTYCSLLHV 565

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGK++ RM ALAEEIY+ IIEP AVLLKTLVLV SK DLL +TERAF ELRK GF PD
Sbjct: 566 YANGKQVDRMHALAEEIYSGIIEPHAVLLKTLVLVNSKCDLLADTERAFLELRKKGFPPD 625

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAM+SIYG R+MV KTNEILNFM + GYTPSLTTYNSLMYMYSRSE  ++SE+ILR
Sbjct: 626 ITTLNAMLSIYGRRQMVSKTNEILNFMNECGYTPSLTTYNSLMYMYSRSEKFEESEQILR 685

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           E+  KGIKPDII +NTVI+AYCRNG+MKEASRIF+EM D GLVP+VITYN F ASY+ADS
Sbjct: 686 EVQAKGIKPDIISYNTVIYAYCRNGRMKEASRIFSEMGDSGLVPDVITYNTFVASYAADS 745

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           +F EAIDVV + IK+GCKPN NTYNS+VD +CKLN  ++A +F+ NL  L+PHI+K+E+ 
Sbjct: 746 LFEEAIDVVQFMIKHGCKPNQNTYNSIVDGYCKLNQRDEAKTFIDNLQKLDPHISKDEEI 805

Query: 301 RLLKHIKQEKKWS 314
           RL + + +  KWS
Sbjct: 806 RLSERVVE--KWS 816

[Close]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-120
Identity = 215/312 (68.91%), Postives = 258/312 (82.69%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M +YRRMLDAG  PDL  YNTVLAALARGG+WEQSE VLAEM++GRCKPNELTYCSLLHA
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKEI  M +LAEE+Y+ +IEP+AVLLKTLVLV SK DLL E ERAF EL++ GFSPD
Sbjct: 569 YANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPD 628

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLN+MVSIYG R+MV K N +L++MK+ G+TPS+ TYNSLMYM+SRS +  KSEEILR
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EI+ KGIKPDII +NTVI+AYCRN +M++ASRIF+EM++ G+VP+VITYN F  SY+ADS
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF EAI VV Y IK+GC+PN NTYNS+VD +CKLN  ++A  FV +L NL+PH  K E  
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDL 808

Query: 301 RLLKHIKQEKKW 313
           RLL+ I   KKW
Sbjct: 809 RLLERI--VKKW 818

[Close]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match: AT2G18940.1 (AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 211.5 bits (537), Expect = 7.7e-55
Identity = 114/306 (37.25%), Postives = 172/306 (56.21%), Query Frame = 1 

Query: 3   IYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYA 62
           +Y  M  AGF   +  YN +L ALAR G W   E V+++MK+   KP E +Y  +L  YA
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572

Query: 63  NGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLR 122
            G     +  +   I    I P  +LL+TL+L   K   L  +ERAF   +KHG+ PD+ 
Sbjct: 573 KGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMV 632

Query: 123 TLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREI 182
             N+M+SI+    M  +   IL  +++ G +P L TYNSLM MY R     K+EEIL+ +
Sbjct: 633 IFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTL 692

Query: 183 IEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMF 242
            +  +KPD++ +NTVI  +CR G M+EA R+ +EM + G+ P + TYN F + Y+A  MF
Sbjct: 693 EKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMF 752

Query: 243 VEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKRRL 302
            E  DV+    KN C+PN  T+  +VD +C+   + +A  FVS +   +P    +  +RL
Sbjct: 753 AEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRL 812

Query: 303 LKHIKQ 309
              +++
Sbjct: 813 ALRVRE 818

[Close]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match: AT5G61990.1 (AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-31
Identity = 75/280 (26.79%), Postives = 132/280 (47.14%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M + + M + G APD+  YN+++  L++    +++   L EM     KPN  TY + +  
Sbjct: 472 MRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           Y    E        +E+    + P  VL   L+  Y K+  ++E   A+  +   G   D
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGD 591

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
            +T   +++       V    EI   M+  G  P + +Y  L+  +S+  N+ K+  I  
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           E++E+G+ P++I++N ++  +CR+G++++A  +  EM   GL PN +TY      Y    
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDA 281
              EA  +       G  P+   Y +LVD  C+LN  E A
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751

[Close]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match: AT5G39710.1 (AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 74/277 (26.71%), Postives = 146/277 (52.71%), Query Frame = 1 

Query: 11  GFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGKEIRRM 70
           G++ D + YNT++    + G + Q+ ++ AEM      P+ +TY SL+H+      + R 
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364

Query: 71  SALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLNAMVSI 130
               +++    + P      TLV  +S++  + E  R   E+  +GFSP + T NA+++ 
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424

Query: 131 YGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEKGIKPD 190
           +     +     +L  MK+ G +P + +Y++++  + RS ++D++  + RE++EKGIKPD
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484

Query: 191 IILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEAIDVVS 250
            I ++++I  +C   + KEA  ++ EM   GL P+  TY A   +Y  +    +A+ + +
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544

Query: 251 YTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNL 288
             ++ G  P+  TY+ L++   K +   +A   +  L
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

[Close]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match: AT1G74580.1 (AT1G74580.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-30
Identity = 68/268 (25.37%), Postives = 133/268 (49.63%), Query Frame = 1 

Query: 6   RMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGK 65
           +M++ G  PD   YNT++A   +GG+ + +E ++ +       P++ TY SL+    +  
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370

Query: 66  EIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLN 125
           E  R  AL  E     I+P  +L  TL+   S + +++E  +   E+ + G  P+++T N
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430

Query: 126 AMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEK 185
            +V+       V   + ++  M   GY P + T+N L++ YS    ++ + EIL  +++ 
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490

Query: 186 GIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEA 245
           G+ PD+  +N+++   C+  + ++    +  M + G  PN+ T+N    S        EA
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550

Query: 246 IDVVSYTIKNGCKPNPNTYNSLVDSFCK 274
           + ++         P+  T+ +L+D FCK
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCK 578

[Close]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match: gi|449438627|ref|XP_004137089.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus])

HSP 1 Score: 502.7 bits (1293), Expect = 4.7e-139
Identity = 252/313 (80.51%), Postives = 280/313 (89.46%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           MAIYRRMLDAG  PDL  YN VLAALARGGLWEQSE VLAEMK+GRCKPNELTYCSLLHA
Sbjct: 521 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHA 580

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKE+ RMSALAEEIY+ IIEPQAVLLKTLVLVYSK DLL ETERAF ELR+ GFSPD
Sbjct: 581 YANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG RRMV KTNEILNF+KDSG+TPSLTTYNSLMYMYSR+E+ +KSE+ILR
Sbjct: 641 ITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EII KG+KPDII FNTVIFAYCRNG+MKEASRIFAEMKDFGL P+VITYN F ASY++DS
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF+EAIDVV Y IKNGCKPN NTYNSL+D FCKLN  ++A+SF+SNL NL+P +TK+E+R
Sbjct: 761 MFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEER 820

Query: 301 RLLKHIKQEKKWS 314
           RLL+ +   KKWS
Sbjct: 821 RLLERL--NKKWS 831

[Close]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match: gi|700188631|gb|KGN43864.1| (hypothetical protein Csa_7G071530 [Cucumis sativus])

HSP 1 Score: 502.7 bits (1293), Expect = 4.7e-139
Identity = 252/313 (80.51%), Postives = 280/313 (89.46%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           MAIYRRMLDAG  PDL  YN VLAALARGGLWEQSE VLAEMK+GRCKPNELTYCSLLHA
Sbjct: 521 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHA 580

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKE+ RMSALAEEIY+ IIEPQAVLLKTLVLVYSK DLL ETERAF ELR+ GFSPD
Sbjct: 581 YANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG RRMV KTNEILNF+KDSG+TPSLTTYNSLMYMYSR+E+ +KSE+ILR
Sbjct: 641 ITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EII KG+KPDII FNTVIFAYCRNG+MKEASRIFAEMKDFGL P+VITYN F ASY++DS
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF+EAIDVV Y IKNGCKPN NTYNSL+D FCKLN  ++A+SF+SNL NL+P +TK+E+R
Sbjct: 761 MFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEER 820

Query: 301 RLLKHIKQEKKWS 314
           RLL+ +   KKWS
Sbjct: 821 RLLERL--NKKWS 831

[Close]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match: gi|659110047|ref|XP_008455020.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 498.0 bits (1281), Expect = 1.2e-137
Identity = 252/312 (80.77%), Postives = 279/312 (89.42%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           MAIYRRMLDAG  PDL  YN VLAALARGGLWEQSE VLAEMK+GRCKPNELTYCSLLHA
Sbjct: 539 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHA 598

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGKE+ RMSALAEEIY+  IEPQAVLLKTLVLVYSK DLL ETERAF ELRK GFSPD
Sbjct: 599 YANGKEVERMSALAEEIYSGNIEPQAVLLKTLVLVYSKSDLLTETERAFLELRKQGFSPD 658

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG RRMV KTN+ILNF+KDSG+TPSLTTYNSLMYMYSR+E+ +KSE+ILR
Sbjct: 659 ITTLNAMVSIYGRRRMVSKTNDILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 718

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EII KG+KPDII FNTVIFAYCRNG+MKEASRIFAEMKDFGLVP+VITYN F ASY++DS
Sbjct: 719 EIIGKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLVPDVITYNTFIASYASDS 778

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF+EAIDVV Y IKNGCKPN NTYNSLVD FCKLN  ++A+SFVSNL NL+P++TK+E+ 
Sbjct: 779 MFIEAIDVVRYMIKNGCKPNQNTYNSLVDWFCKLNRRDEASSFVSNLRNLDPYVTKDEEC 838

Query: 301 RLLKHIKQEKKW 313
           RLL+ +   KKW
Sbjct: 839 RLLERL--NKKW 848

[Close]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match: gi|590687150|ref|XP_007042582.1| (Pentatricopeptide repeat-containing protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 461.8 bits (1187), Expect = 9.2e-127
Identity = 229/313 (73.16%), Postives = 272/313 (86.90%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M++Y+RML+AG  PDL  YN VLAALARGGLW+QSE +LAEMK+GRCKPNELTYCSLLH 
Sbjct: 508 MSVYKRMLEAGVTPDLSTYNAVLAALARGGLWKQSEKILAEMKDGRCKPNELTYCSLLHV 567

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANGK++ RM ALAEEIY+ IIEP AVLLKTLVLV SK DLL+ETERAF ELRK GFSPD
Sbjct: 568 YANGKQVDRMHALAEEIYSGIIEPHAVLLKTLVLVNSKCDLLVETERAFSELRKKGFSPD 627

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAMVSIYG R+MV KTNEIL FM +SG+TPSLTTYNSLMYMYSRSEN ++SE++LR
Sbjct: 628 ITTLNAMVSIYGRRQMVSKTNEILTFMNESGFTPSLTTYNSLMYMYSRSENFEESEKVLR 687

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           E++ KGIKPDII +NTVI+AYCRNG+MKEASRIF+EM + GL+P+VITYN F ASY+AD+
Sbjct: 688 EVLAKGIKPDIISYNTVIYAYCRNGRMKEASRIFSEMGNSGLMPDVITYNTFVASYAADT 747

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           MF EAIDVV Y IK+GCKPN NTYNS+VD +CKLNH ++A++FV+NL  L+PHI+KEE+ 
Sbjct: 748 MFEEAIDVVRYMIKHGCKPNQNTYNSIVDGYCKLNHQDEASTFVNNLQKLDPHISKEEEI 807

Query: 301 RLLKHIKQEKKWS 314
           RL + I +  KWS
Sbjct: 808 RLSERIVE--KWS 818

[Close]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match: gi|567860418|ref|XP_006422863.1| (hypothetical protein CICLE_v10030402mg [Citrus clementina])

HSP 1 Score: 456.4 bits (1173), Expect = 3.9e-125
Identity = 226/313 (72.20%), Postives = 267/313 (85.30%), Query Frame = 1 

Query: 1   MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHA 60
           M+IY+RML+AG  PDL  YN VLAALARGG+WEQSE + AEMK GRCKPNELTY SLLHA
Sbjct: 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568

Query: 61  YANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPD 120
           YANG+EI +M AL+EEIY+ IIEP AVLLKTL+LVYSK DLLM+TERAF EL+K GFSPD
Sbjct: 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD 628

Query: 121 LRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILR 180
           + TLNAM+SIYG R+MV KTNEIL+FM DSG+TPSLTTYN+LMYMYSRSEN  ++E++LR
Sbjct: 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688

Query: 181 EIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADS 240
           EI+ KGIKPDII +NTVIFAYCRNG+MKEASRIF+EM+D GLVP+VITYN F ASY+ADS
Sbjct: 689 EILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748

Query: 241 MFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKR 300
           +FVEA+DVV Y IK GCKPN NTYNS+VD +CKLN   +A +FV+NL  L+PH+TKE + 
Sbjct: 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 808

Query: 301 RLLKHIKQEKKWS 314
           +L   I   KKW+
Sbjct: 809 KLSDRI--AKKWT 819

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP362_ARATH3.2e-11968.91Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PP163_ARATH1.4e-5337.25Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop... [more]
PP442_ARATH2.1e-3026.79Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
PP407_ARATH3.6e-3026.71Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN... [more]
PP120_ARATH4.0e-2925.37Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th... [more]
BLAST of Cp4.1LG04g07730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4H7_CUCSA3.3e-13980.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1[more]
A0A061E043_THECC6.4e-12773.16Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cac... [more]
V4RNZ1_9ROSI2.7e-12572.20Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030402mg PE=4 SV=1[more]
A0A067EVB9_CITSI2.7e-12572.20Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1[more]
A0A0D2SM99_GOSRA5.1e-12471.88Uncharacterized protein OS=Gossypium raimondii GN=B456_005G233300 PE=4 SV=1[more]
BLAST of Cp4.1LG04g07730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02860.11.8e-12068.91 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G18940.17.7e-5537.25 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G61990.11.2e-3126.79 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G39710.12.0e-3126.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G74580.12.2e-3025.37 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG04g07730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438627|ref|XP_004137089.1|4.7e-13980.51PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativu... [more]
gi|700188631|gb|KGN43864.1|4.7e-13980.51hypothetical protein Csa_7G071530 [Cucumis sativus][more]
gi|659110047|ref|XP_008455020.1|1.2e-13780.77PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo][more]
gi|590687150|ref|XP_007042582.1|9.2e-12773.16Pentatricopeptide repeat-containing protein, putative isoform 1 [Theobroma cacao... [more]
gi|567860418|ref|XP_006422863.1|3.9e-12572.20hypothetical protein CICLE_v10030402mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008568 microtubule-severing ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07730.1Cp4.1LG04g07730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 255..282
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 14..62
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 178..231
score: 6.1E-14coord: 111..166
score: 8.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 193..226
score: 1.3E-9coord: 18..51
score: 3.0E-4coord: 263..283
score: 7.1E-4coord: 158..191
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 155..189
score: 11.948coord: 15..49
score: 10.468coord: 1..14
score: 5.196coord: 120..154
score: 8.583coord: 260..294
score: 8.495coord: 85..119
score: 7.081coord: 50..84
score: 7.487coord: 225..259
score: 8.572coord: 190..224
score: 13
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 257..292
score: 4.2E-5coord: 156..220
score: 4.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..79
score: 1.4E-110coord: 115..301
score: 1.4E
NoneNo IPR availablePANTHERPTHR24015:SF308SUBFAMILY NOT NAMEDcoord: 115..301
score: 1.4E-110coord: 1..79
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07730Cucsa.219290Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07730CmaCh19G005630Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07730CmoCh11G014070Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07730CmoCh19G005780Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07730Cla016080Watermelon (97103) v1cpewmB665
Cp4.1LG04g07730Csa7G071530Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07730ClCG02G006650Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07730CSPI07G07000Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07730Lsi03G005620Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07730Bhi05G001004Wax gourdcpewgoB0845
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07730Silver-seed gourdcarcpeB0266
Cp4.1LG04g07730Silver-seed gourdcarcpeB0272
Cp4.1LG04g07730Silver-seed gourdcarcpeB0409
Cp4.1LG04g07730Silver-seed gourdcarcpeB0529
Cp4.1LG04g07730Silver-seed gourdcarcpeB0639
Cp4.1LG04g07730Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07730Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07730Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07730Wax gourdcpewgoB0847
Cp4.1LG04g07730Wax gourdcpewgoB0860
Cp4.1LG04g07730Wax gourdcpewgoB0879
Cp4.1LG04g07730Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07730Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07730Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07730Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07730Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g07730Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07730Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07730Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07730Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07730Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07730Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g07730Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07730Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07730Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07730Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07730Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07730Melon (DHL92) v3.6.1cpemedB771