Cp4.1LG04g07070 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g07070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	tobamovirus multiplication 1
Location	Cp4.1LG04 : 4420959 .. 4429669 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGATTTAGTGATCACCTCTGCGGTTGGAGGATTCGAATGGTGGAATCAAATTGATGAGTCGGAGGATTGGCAGAAGGGGATTTACTACGCTTTGTCTGCTTCTTATGGCCTCATCTCGATCATTGCCTTAGTACTCCACTTTTCTCCAATTCTTACTGTTCTTTTGTTCTGTATGTTATGAAATTCATGAGCTGTTTAAAGCGTTTTTTTGGTTGAGTTCGTATCTTATCTCACGTATCATCAATTAACAGAAATGAGATATCTATCTCATATTTGTTTATTTTTTTGAAGTTCTTAAGTAACATAGACTTGTGGATGTGCTGTGTGCTTATAAACATGGTTAGAACTGATTTTTGTAGCTTAATTTTAACATATTATTTGGATTCCGCACTCATATAAGTTGAGATTTAATCCTAAGTTGTTTAAAGCATTTTTTTGGTTGAGTTCGTATCTTTATTGGAATTTACATGGCTTCTTCTCCATCTTTCATCTCACGTATCATCAATTAACAGAAATGAGATATTTATCTCATATTTGTTTATTTTTTTGAAGTTCTTAAGTAACATAGACTTGTGGATGTGCTGTATGCTTGTAAACATGGTTAGAACTGATTTTTGTAGCTTAATTTTAACATATTATTTGGCTTCCGCACTCATATGAGTTGAGATTTAATCCTAAGTTGATTAAGAGTCATCAATTAGTGTCAAAAATTATTTTGAAATCTTAAGAGAGAATTCCGTAGTGGTGTAGTGGAGAGTGTTTTTGGAGCATTTATGAATCTCAGTATAGCTATCACACGTTGGTCAGGAAACACAATAGATAAATTTGATGAATGCGAGTCACTAGCACAACCCATGGACACCTTACAAATGTTGCAGTTGTGCTTCATTGTTGCTGGTGCAGACACGTTGAACAAACGTTGTTGCTCTAGGATGGAGGAGGTGCTTTTCCACCTTCCATTTTGTTACTAGGGTTTTAGTCTCTGGTTCTCTGCTTTTTCTGCCACCTTGCTACCTGGGAGATTTGATTGGATAGAGAGGAGAATTTTCAGTATTGTTGAGAGGTCTCGGTAAGATATTTAGTTTTGTGTTAGATTTACTTCTCCGGGCATGAGTATTAGAGGAATTTCGTAAGATTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTGTATAGACAGTTAAATAGCTCCTTTTGTTACGATATGTACTTTCATATTCTCAATGGAAGTATTTCTCAATAAAAAAAATTGATATACTAAAATTAAACCACTTAAGCTGTCTTGAGGAAAAAGAACACACTTGTTTTTTTTATAATTAACGACTATAGTAATTGCTCAAGTTTCCAGGTTCAACTTATTCGGATTCAAGTACGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCGTTGTAAATGGATGTAAGATTGTATATTTGTTATTTTTCATTTTAGTTTTAAGACTCTACTTGATGAGTTAATGCTACCTTATTCTTATTTTCGTTTTGACAGTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATCAGACCGAAGGTAGGTTTCTTATATTAATTGTCACAATGCCAACTAGATTGTCTTAAACTCTTAATACCCTATTCAAGCCATGGTTATCACTTGATGATTGAGTAAGTTTAGAGCTCATTTTGATATTGTCTTCGGATTATCTATGAGTTTTATGATAATTTAAACTAGAACTTTTAGTTGATCTTATTTGAAGCACCTTCCCTTTGTCATTAGCTTACATGTTAATTCCAAACATTTCCAGAATATTCAATTTGCTCATTCAGCGAAGCTTTCATCAACACACTATTATTACATGAACAAAAGTAAAGGTTGAGAATAAAAAATTTAATTACAGTTATCAATGCACAACTAGATTATTTATTTATTTATTGTTTGTACTTGTATTTGTATTTGTATTTTTGGAAATACCATATTGAAATTTATTTATTTTCAAACTACGGACATCCAGAAGGCTTTCTGAGCTGAAATTTTTAAATAAACACAAACAAACAAAAGCCTTGTTTCCTGCTTCCTGTTGGACCGTTGGTCATAAAAATCTTGGGATTTCTTCCTCTTCCAACACTCGGAACCATAGTAATTTTAGATAACGATTTGTTGCATTATGTAATTTTGTTACCCATCACAATCCACAGACAGCAGAGGATCCTATTCCCATATAAAAAAGGCTAGTCCGTATATAAATTTAAAATTGATAATCAAGATATTCAGTGAGACCCACGTTTCTTTTCCCTTATGCAACTGTGATTATATTCACTGATCTATATGGCTTGAAACTTTCTTGCTGGTAAAGGCTCTTGAAATGGTGGTTATGGAGGTTCCTGGACTTCTATTTTTTTCAACGTACACACTACTTGTTCTATTTTGGGCAGAGATCTACTATCAGGTAATTTGTTATTATGATTATAGTTCGAAGTTATATCACTTATTATATCATTTCTGTGCAAGATTCATCATTGGTAATCCGTGTAGGTGATTATTTTTCTTTCAGGCGCGAAGTCTTCCGATTGATAAACTTAAACCTACTTACTGTATCATCAATGGAGTTATATATCTTATACAGGTAAGATAGACAATGTCGCAACCAGAAGTCAGCAGTACTATGTGAAAAACATATTTGAACTGAATTTGGTTGATTTGTTTACATTCAGCTTTATTTAAATTATTTGTCATCATGTTTCAGATCTGCATTTGGATATTTGTGATGTTAAACAAATCTCCTGGTGCAGTTATTGGTGCTAAGCTTTTCTTTTCAGGTTTCAGCTCGAAACCCGTATTCTTCTCTCTTATATCAAAAGCAAATGCTTTTTTTAAAAAAAATTATTTGCTTTAGAAATGCAATATTTAATTTATGTCCATTTTTAACTGGAATCTTTTGGCGTCCACATCCTAGTTTATGGAGGCATATGTAAATTGTAATTTTTTTTTCTTCGTTATTTCTAGTGGTTTCATTGTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGTAATATATGTTTATGAATTGAGGAGCTGCGGTTAATCATGTTCCACTCTAAACAACCACTCTCTTAACAGGTTATTTGTCATGCTGAGGCAATTCCCAATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTTGGTTTTTTAATGTGATTTTTTAAAATTCTTTTTGTTGACCATAGTTTCCTTAGGATTAGAAATAATCGAAGCAACAGAGTTTAAGAAAGGCACGTATATCATTTCATCTTTTAAGTATACATAATTTTTCAATGTTGTCTCTAATGTCCTGAAAGTACTGATTTATTCCCGTGTATTTTACAAGTTTACCCTGCTCAATGATGGTGTTGAAATTAAATATTAGAAGGGAGTCTTGGCATTTTTTCTAAAAACCAATGTGCCCTACACTTTTTTTTTTTGAAAACAGTGCCCACGTGTTGATACAAGGTATTTCATAGCTCATTTGGTACTGAATTAGAAAAGTTTTATCCCAGTAAAGAATGATCATAAGATATTTCATAACTCATTTAGTATTCAATTAGAGAAGTCTACCCCAGTAAGGAAAGACCATAAGATATTTTAAATGCTATGCCACTGTTCCACTATTCAATGTCAACAAGGATTTGTTTGAAAAATTGGAATGAGATAGAACTTTTAAAGCATCAAGGCCATAATTAAGGAAGAGTGTATATTTCAGGGATCAATCATGAATTTAGCCTTTTGAAAGATCAAGATTTTCTGATGCGCTTGTTAATTTCTTTCTTGTTCTATCTGTGCAGGTTGGTTGTGTGACAACAATTTGTTTTATCTGTTTCTTTATACGGTGTTTTGTGGTGAGTTTCCTTTTGGTAAAGGCAATCTTAATCCGACATTATTTAAGCAATTAATACACATGTATATTTGTTCATCTTGTAGCTTGCCTTCTCTGCATTTGACAAGGATGCAGATCTTGACGTCCTAGATCATCCCATTCTCAACCTGATATACTACATGGCAAGTTTTAAAATCCCCTAATATCTTTTCTAAGATGAATAGGTTATTCTTTTTTTGTTAAAAGTTCGAGTAAGACAACTGAGGAGGTTAAAAAATGATTCTATTTGCTGGGATTGGTAGGGCCGTTGGCTAACTTTTTTTTCCCCACTTAATGAAACATTAAATTTAACTTATCCTTTTACAGGGAGAAAAAAATCCACGAGAAAAATTTCCAAATATAATTATGAAGTAGCTTAAACTCAAAAGTAATGGGCGCTCCAACTTTCTGTTTAATCCAGAGTCTGTCAAAAACTTTCTTTAGCAGGGTATCAATTTATTATAAGTGCACACTGCAGTCATTTGGAGGAGTTTTCATACATCCACATCATGGATCCTGTACATTCGTGGATGATGGTCTTGTAATCAATTTTCAATCCTAGTTTTTAATTTTCTTTCCCCCAGACATGGAATTCATGAAGTTTCTCCATTGAAGTCTCTTCCCTTTTTGTCACTCCATGATGTTGCTCGATTTCCAAATTAAAATAATTTTCAGATCAAACATAGCTCAAATAATTTGATCTTCACTTAGGTGAGAGATTATCCAAAGGATATTTTTTTTGTCTTGGAGCCTTCACAACCAGTCTTGAATTTTTTTATCTTCAATATTCTTTTCATGGATTGTTCTCTAGAAGCACAGATATGGGCATGGGACACGGACATGGCAGGATGCCAACATCTTTAGGACATTAGAATGAAAAAGGTACATAAACAGCATATCGTACGTGTGCAGAAGTATCCAGGCCGACACATGTTTGACATGGACACTGGACCAAAAATGAAAGTGTTTGTGCTTATTAGATTGTCCTTTCCCCTTTGGAATGTATTGCATGAGTATTCCTTTCCATCCTTCATAGTTCTTTTTTTTAGTACAACAAAGAGGGGATTTGAACCTTTGATCTCAAGGGAAGAAGTGGATGTCTTAATGGAAGCTTGACCTTCATAGTTCTTTTGTTAACCATTTTTTTCAATTGATAGTGTTTTTTGGGTGCTCCTAACCATCAAAGTTCCCCTTCCAAGGTGCCTTGCAGGGATGGTATGAAAACAATGATATATAGATAATAAAAATAAAAATAAAGAAAAAGACACAATGCCAAGGGTGTACTGGTTCACCTTGAACAGAATAAGAGAGACATGCTTGTTCATATGCTCACAAAGGCTTTACCTCTCTTAACACTGACCATGTGAAGAGTTCTCATAGGTGTCTACGTGGCTGCTGATGCATATATATTGGCTACCACAGAAAAAGCCATTTTATGGTTAGTGTTTACAAAGACAGTATTGTCAGTTCCAAGGCACCTTGAAATAAAATTGTGCCTCAAAGTAGGTGCTTCAGTGCTAGGGTGGCGCCTAGCCATTGAGCTCCCAAGCCACCTGCTGATATGCTACAGCCACGCCTTAAACTCTCTTCTTTCCTCTCCTCTCGTGCTTCAATTTGGGCTTCAAAACAGTCTTTGAACGCCTAGGCATCAAGCTCGCACCAAACTTCTCTTCTTTCATGCTTCAATTCGGGCTTCAAAACAGTCCTCAAATGAGTCTCAAACTGAGTTTGATGGGCATTGTATTTTCTATTTGTCGTAGCTCTCTTTCTTCTGTTGGTGAATTGCTGCACATATTCAACTAGAGTACTTTTGTGGGGTTTAATATTCTTTATCGAACTTTCTAATCATGAAAGTTCTTATTTGTTTCTATGATCTTGTTAGCTTATCATTGGAGCAAACTTTCCATTTTCATCTTTTAATTTATTTATAGTTTTTCTTCTCTCTGATAAATTTGATGTGCTTGCTACTGCAGTTGGTAGAGGTTGTTCCTTCAGCATTAGTTCTGTTTATACTGAGGAAACTTCCTCCGAGGCGTATGTCTGATCGGTATCACCCCATTGAATGAAGCTCTAAACAGTTTTATGTCAGCAGAGGTTTCCACTCTAATTGTGTATTTTACTATGTGTAGATGACGTTTGTTGTACAGGATTTCGATTACAGATTTCTGTTATCATCTGTTTGGCTAGATATACTAGTATCCCTTCTAATTTCATCCAAAAGTAGTTCTTTCAGCCAAAAACAAAACATGCCCAAAAGATTACATATGTCAACGTGCATGCTGCTGCAGTCGGTGGAGTTTGTTCCATCGGCATTGGCTATACCGATAAAACTTCCTCCAAGGCGTGTATCTGATCAGTATCAGTCCATCTAATGAAAGCTCTCAACAATTTCAGTTCAGCAGATCTTACCATTCTAACTGTGTAGTTACAGATACATCCCACTGAATGAAGTTCTCTACAATTTCTGGTCAGGAAAGCTTTCCATTTTAAATCTGTATTTCATTTTTGTAGATGTTTGTTCTTCATTGCAAATTTCTGTTTTTCTCTGTCAGGCTGGATTTACAATATACTAGCATATATGCCCAAAATTATGCATCTTTGTCATATACAGAACATCCCATTATTTTGAAGAAGCTTTATGATTGCTTTTATTGAAGTAACTGGAATAAATTCTATAATGTTATCTATGTGGGAGCAGTCTGATTATAATACGTGAATTTATACATTGGAGAGAGATGTTTGGAATATATTTTGAGGCAAGGTATAGGGTGAAGTAAGGAATAGGATTTAGGAAATTGGTAAAGTGTGGCTTCTTCATCAATTCATCTGTTTGAACATTGCATACATTGGAATTATTGTAGGTAAGGTATTAGGGTGTCACCACTTCACATGCTAGGGGAGAACATCTTCAAAAGTATAGGTGGTTAATCTGGAGGGTTTTTATTTGTTATCCATGATTGTTTGGGTCAGCTTCATTGGACACCCTCCTAAACTTAAAGCTAGTAGTGTGGTGGTGTAGGTAATGGCTCCATTTTTCGGTAGGCTGCTGGTTGGGAGAGTGTTGGGCATACACAATCTGTTCTCCAAGGAGGTTGTAGACAATACCCCAAAACCCAATCTTGGTTATCCGAAAAAGTTAGAAGGGGAAGAGGAGAAGATGCTGGGGTTCACATCCCAAAAAACTTGGAGCAAGAGGGTGAGTAGGCTTTATTGAGAAGGGGTAAGGAGTCACCAATAGAGGTTCGTATGGGGGGAGGTCGTAAGAAGGAATCGAGATACGAGGGGGCGGGCGTGAAGGTGACTATGAGTGACGATTAACTGTTGAGCTCTCAGAGAAGGGAAAGAATTGGATAATAAGGAGGAGGAACTCTTATATTTTGTACTTTATAGTTCCTCATAGTTGTTAACCTCAAGGTTAGGAGGAGGATGATAGATGAAACAGGGGTGATGTTGATGATCAAATCATTGACACAACCTTTGGCAGTGTGTGTGACTATGGAAGAGATCGGTGAAGATTAAAACGTAACGAAGGTGTGGCCAAATGAAAGGAGTTGGCGTTAGAGGAAAGTTTGGGCTAGATTTGTTGGTCGAGTTCTTGAAATGTTGAGTGGGTCGATCACACGTCAAGTATGTACGACAAACAAAGGTTACCTCTTTCTTTCTCTTACGTTGCTTCGAATATTCATAGGTTGAACTATTGCAGTTTCTCATAATTTGAATGTTCATTTGTCTAAGTTTTGATCATCCCTTGGTTGGCACTTTGAACGTGCCATTTAGCAAAATGTAATGCAACTCTTCCCATAGATTAGTCACCAAACCTTGAAAGTTTTCCATGGAGATCCTATGTTTCCTTTTGTTTTCTTTTTGCTTTTGTGAGATGTTTTACCAATCCTTTCGGGAAGAGACCGGCAATTGATCTTCACTTCTCATGGTTGGTGTTTTGATGATTTTGACAATCACCTTTTCCCCGAGAAAATGCCATAAGGAAGGCGACTTCTACATGCTTTGTTCTCTCATAGAAGCCACGTTCAATCCGTTGCTTGTTGCTCCAACTTAGGAGTAGGGGATTTAGAGCCTTTTTCTGACTGAAGGTTGCTATGCTAGTTGTAGGGCTCTTGCAGTTGATCATTAGAGCTTGGCGTGGAAAAAGTATATGATCGGAGGATTTTAGAGCGGGTCCGAACGCAGGTACAAGTTTCTCATATTCAGTTGCTTGATGATATCCTTCTATTTTGTGAACAGAGTATAAATAGCTTGTGGAACAAGTTTAAAGTTTTAGAGAATTTGTCGATTTGCTCGAGTTGGAAGCTGAACTGTGGAACGTCTCCATCATCAACGGATTCGAGGTCATATAATGAAAATGAAGTATCCTATGATAGAATTTTGAACAATCACTTGTCCTCAGGTTTTTGTCGTTTTTGGCCTTCTTTTTGTTCTGTCTCGAGTCGAGAGATGCAGCTCGTATCAAAACAATCTAGATGTCTACCCAATTATTACCCCTCTTCACATTTCAGGGGAAGAACTAGCTAGCTCTAAGCTTTTGTAGGGCCTCTTACTTCTAATCAACTCGTTTGGTTTCAGCCCAGTTTGGTTGCAGTTGGCCACTGCACGGAAATTCGACTCGTAGATAAACTTATATTCGATTTCTAGCTTCAGACAATTCAAACCTCGAAAAGTCTTTTATGTTGAGATATATTATTTATGGAATATATCCTAGATATTATATCTTAATATTCTTCCATTTATGGTTAGATTTATAGTATATTTTATTTTAT

mRNA sequence

ATGGTGAGGGATTTAGTGATCACCTCTGCGGTTGGAGGATTCGAATGGTGGAATCAAATTGATGAGTCGGAGGATTGGCAGAAGGGGATTTACTACGCTTTGTCTGCTTCTTATGGCCTCATCTCGATCATTGCCTTAGTACTCCACTTTTCTCCAATTCTTACTGTTCTTTTGTTCTGAAACACAATAGATAAATTTGATGAATGCGAGTCACTAGCACAACCCATGGACACCTTACAAATGTTGCAGTTGTGCTTCATTGTTGCTGGTGCAGACACGTTGAACAAACGTTGTTGCTCTAGGATGGAGGAGGTTCAACTTATTCGGATTCAAGTACGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCGTTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATCAGACCGAAGGCTCTTGAAATGGTGGTTATGGAGGTTCCTGGACTTCTATTTTTTTCAACGTACACACTACTTGTTCTATTTTGGGCAGAGATCTACTATCAGGCGCGAAGTCTTCCGATTGATAAACTTAAACCTACTTACTGTATCATCAATGGAGTTATATATCTTATACAGATCTGCATTTGGATATTTGTGATGTTAAACAAATCTCCTGGTGCAGTTATTGGTGCTAAGCTTTTCTTTTCAGTGGTTTCATTGTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGTTATTTGTCATGCTGAGGCAATTCCCAATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAACAATTTGTTTTATCTGTTTCTTTATACGGTGTTTTGTGCTTGCCTTCTCTGCATTTGACAAGGATGCAGATCTTGACGTCCTAGATCATCCCATTCTCAACCTGATATACTACATGGCAAGTGTCTACGTGGCTGCTGATGCATATATATTGGCTACCACAGAAAAAGCCATTTTATGGTTAGTGTTTACAAAGACAGTATTGTCAGTTCCAAGGCACCTTGAAATAAAATTGTGCCTCAAATTGGTAGAGGTTGTTCCTTCAGCATTAGTTCTGTTTATACTGAGGAAACTTCCTCCGAGGCGTATGTCTGATCGGTATCACCCCATTGAATGAAGCTCTAAACAGTTTTATGTCAGCAGAGCCAAAAACAAAACATGCCCAAAAGATTACATATGTCAACGTGCATGCTGCTGCAGTCGGTGGAGTTTGTTCCATCGGCATTGGCTATACCGATAAAACTTCCTCCAAGGCGTGTATCTGATCAGTATCAGTCCATCTAATGAAAGCTCTCAACAATTTCAGTTCAGCAGATCTTACCATTCTAACTGTGTAGTTACAGATACATCCCACTGAATGAAGTTCTCTACAATTTCTGGTCAGGAAAGCTTTCCATTTTAAATCTGTATTTCATTTTTGTAGATGTTTGTTCTTCATTGCAAATTTCTGTTTTTCTCTGTCAGGCTGGATTTACAATATACTAGCATATATGCCCAAAATTATGCATCTTTGTCATATACAGAACATCCCATTATTTTGAAGAAGCTTTATGATTGCTTTTATTGAAGTAACTGGAATAAATTCTATAATGTTATCTATGTGGGAGCAGTCTGATTATAATACGTGAATTTATACATTGGAGAGAGATGTTTGGAATATATTTTGAGGCAAGGTATAGGGTGAAGTAAGGAATAGGATTTAGGAAATTGGTAAAGTGTGGCTTCTTCATCAATTCATCTGTTTGAACATTGCATACATTGGAATTATTGTAGGTAAGGTATTAGGGTGTCACCACTTCACATGCTAGGGGAGAACATCTTCAAAAGTATAGGTGGTTAATCTGGAGGGTTTTTATTTGTTATCCATGATTGTTTGGGTCAGCTTCATTGGACACCCTCCTAAACTTAAAGCTAGTAGTGTGGTGGTGTAGGTAATGGCTCCATTTTTCGGTAGGCTGCTGGTTGGGAGAGTGTTGGGCATACACAATCTGTTCTCCAAGGAGGTTGTAGACAATACCCCAAAACCCAATCTTGGTTATCCGAAAAAGTTAGAAGGGGAAGAGGAGAAGATGCTGGGGTTCACATCCCAAAAAACTTGGAGCAAGAGGGTGAGTAGGCTTTATTGAGAAGGGGTAAGGAGTCACCAATAGAGGTTCGTATGGGGGGAGGTCGTAAGAAGGAATCGAGATACGAGGGGGCGGGCGTGAAGGTGACTATGAGTGACGATTAACTGTTGAGCTCTCAGAGAAGGGAAAGAATTGGATAATAAGGAGGAGGAACTCTTATATTTTGTACTTTATAGTTCCTCATAGTTGTTAACCTCAAGGTTAGGAGGAGGATGATAGATGAAACAGGGGTGATGTTGATGATCAAATCATTGACACAACCTTTGGCAGTGTGTGTGACTATGGAAGAGATCGGTGAAGATTAAAACGTAACGAAGGTGTGGCCAAATGAAAGGAGTTGGCGTTAGAGGAAAGTTTGGGCTAGATTTGTTGGTCGAGTTCTTGAAATGTTGAGTGGGTCGATCACACGTCAAGTATGTACGACAAACAAAGGTTACCTCTTTCTTTCTCTTACGTTGCTTCGAATATTCATAGGTTGAACTATTGCAGTTTCTCATAATTTGAATGTTCATTTGTCTAAGTTTTGATCATCCCTTGGTTGGCACTTTGAACGTGCCATTTAGCAAAATGTAATGCAACTCTTCCCATAGATTAGTCACCAAACCTTGAAAGTTTTCCATGGAGATCCTATGTTTCCTTTTGTTTTCTTTTTGCTTTTGTGAGATGTTTTACCAATCCTTTCGGGAAGAGACCGGCAATTGATCTTCACTTCTCATGGTTGGTGTTTTGATGATTTTGACAATCACCTTTTCCCCGAGAAAATGCCATAAGGAAGGCGACTTCTACATGCTTTGTTCTCTCATAGAAGCCACGTTCAATCCGTTGCTTGTTGCTCCAACTTAGGAGTAGGGGATTTAGAGCCTTTTTCTGACTGAAGGTTGCTATGCTAGTTGTAGGGCTCTTGCAGTTGATCATTAGAGCTTGGCGTGGAAAAAGTATATGATCGGAGGATTTTAGAGCGGGTCCGAACGCAGGTACAAGTTTCTCATATTCAGTTGCTTGATGATATCCTTCTATTTTGTGAACAGAGTATAAATAGCTTGTGGAACAAGTTTAAAGTTTTAGAGAATTTGTCGATTTGCTCGAGTTGGAAGCTGAACTGTGGAACGTCTCCATCATCAACGGATTCGAGGTCATATAATGAAAATGAAGTATCCTATGATAGAATTTTGAACAATCACTTGTCCTCAGGTTTTTGTCGTTTTTGGCCTTCTTTTTGTTCTGTCTCGAGTCGAGAGATGCAGCTCGTATCAAAACAATCTAGATGTCTACCCAATTATTACCCCTCTTCACATTTCAGGGGAAGAACTAGCTAGCTCTAAGCTTTTGTAGGGCCTCTTACTTCTAATCAACTCGTTTGGTTTCAGCCCAGTTTGGTTGCAGTTGGCCACTGCACGGAAATTCGACTCGTAGATAAACTTATATTCGATTTCTAGCTTCAGACAATTCAAACCTCGAAAAGTCTTTTATGTTGAGATATATTATTTATGGAATATATCCTAGATATTATATCTTAATATTCTTCCATTTATGGTTAGATTTATAGTATATTTTATTTTAT

Coding sequence (CDS)

ATGGACACCTTACAAATGTTGCAGTTGTGCTTCATTGTTGCTGGTGCAGACACGTTGAACAAACGTTGTTGCTCTAGGATGGAGGAGGTTCAACTTATTCGGATTCAAGTACGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCGTTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATCAGACCGAAGGCTCTTGAAATGGTGGTTATGGAGGTTCCTGGACTTCTATTTTTTTCAACGTACACACTACTTGTTCTATTTTGGGCAGAGATCTACTATCAGGCGCGAAGTCTTCCGATTGATAAACTTAAACCTACTTACTGTATCATCAATGGAGTTATATATCTTATACAGATCTGCATTTGGATATTTGTGATGTTAAACAAATCTCCTGGTGCAGTTATTGGTGCTAAGCTTTTCTTTTCAGTGGTTTCATTGTCTGCTGCACTGGGTTTCCTGATATATGGTGGGAGGTTATTTGTCATGCTGAGGCAATTCCCAATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAACAATTTGTTTTATCTGTTTCTTTATACGGTGTTTTGTGCTTGCCTTCTCTGCATTTGACAAGGATGCAGATCTTGACGTCCTAGATCATCCCATTCTCAACCTGATATACTACATGGCAAGTGTCTACGTGGCTGCTGATGCATATATATTGGCTACCACAGAAAAAGCCATTTTATGGTTAGTGTTTACAAAGACAGTATTGTCAGTTCCAAGGCACCTTGAAATAAAATTGTGCCTCAAATTGGTAGAGGTTGTTCCTTCAGCATTAGTTCTGTTTATACTGAGGAAACTTCCTCCGAGGCGTATGTCTGATCGGTATCACCCCATTGAATGA

Protein sequence

MDTLQMLQLCFIVAGADTLNKRCCSRMEEVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGLLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVIGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRCFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEKAILWLVFTKTVLSVPRHLEIKLCLKLVEVVPSALVLFILRKLPPRRMSDRYHPIE

Homology

[Close]

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot
Match: TOM1_TOBAC (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.0e-77
Identity = 143/225 (63.56%), Postives = 176/225 (78.22%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           +QLIRI++RVPE+ WTTQK FHLMNFVVNG+RAI+FG +K VFL  PK L + ++++PGL
Sbjct: 51  IQLIRIELRVPEYGWTTQKVFHLMNFVVNGVRAIVFGFHKQVFLFHPKVLSLAILDLPGL 110

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFST+TLLVLFWAEIY+QARSLP DKL+ +Y  ING IY IQ CIW+++  N +     
Sbjct: 111 LFFSTFTLLVLFWAEIYHQARSLPTDKLRISYISINGAIYFIQACIWVYLWSNDNSTVEF 170

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
             K+F +VVS  AALGFL+YGGRLF+MLR+FPIES+GR+KKL+EVG VT ICF CF I C
Sbjct: 171 IGKIFIAVVSFIAALGFLLYGGRLFLMLRRFPIESKGRRKKLHEVGSVTAICFTCFLISC 230

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FV+  SAFD DA LDVLDHP+LNLIYY+  V +   A +L    K
Sbjct: 231 FVVVLSAFDPDASLDVLDHPVLNLIYYLL-VEILPSALVLYILRK 274

[Close]

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot
Match: TOM1_ARATH (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana GN=TOM1 PE=1 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.9e-76
Identity = 151/244 (61.89%), Postives = 183/244 (75.00%), Query Frame = 1


Query: 11  FIVAGADTLNKRCCSRMEEVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKS 70
           F + GA  L     S +  VQLIRIQ+RVPE+ WTTQK FHLMNFVVNG+RA+LFG +  
Sbjct: 39  FALCGAYAL----VSAVALVQLIRIQMRVPEYGWTTQKVFHLMNFVVNGVRAVLFGFHMQ 98

Query: 71  VFLIRPKALEMVVMEVPGLLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYL 130
           VFL+ PKAL  V++++PGLLFFS YTLLVLFWAEIY+QARSLP DKL+ TY  +N  +YL
Sbjct: 99  VFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRITYISVNVAVYL 158

Query: 131 IQICIWIFVMLNKSPGAVIGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKK 190
            QI IW ++ ++ +    +  K+F +VVS  AALGFL+YGGRLF MLR+FPIES+GR+KK
Sbjct: 159 AQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKK 218

Query: 191 LYEVGCVTTICFICFFIRCFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILA 250
           L+EVG VT ICF CF IRC V+A SAFDKD  LDVLDHP+LNLIYYM  V V   A +L 
Sbjct: 219 LHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMV-VEVLPSALVLF 277

Query: 251 TTEK 255
              K
Sbjct: 279 ILRK 277

[Close]

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot
Match: TOM3_TOBAC (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum GN=TOM3 PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-68
Identity = 124/208 (59.62%), Postives = 168/208 (80.77%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQLIRIQ+RVPE+ WTTQK FH +NF+VNG+R+++F   + V  + P+ ++ +++++P L
Sbjct: 57  VQLIRIQMRVPEYGWTTQKVFHFLNFLVNGVRSLVFAFRRDVQKLHPEIVQHILLDMPSL 116

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
            FF+TY LLVLFWAEIYYQAR++  D L+P++  INGV+Y+IQI +W+ +        VI
Sbjct: 117 AFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINGVVYVIQIILWLIIWWKPVRVLVI 176

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            +K+FF+ VSL AALGFL+YGGRLF+ML++FP+ES+GR+KKL EVG VTTICF CF IRC
Sbjct: 177 LSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRC 236

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYM 238
            ++ F+AF+K ADLDVLDHPILNLIYY+
Sbjct: 237 VMMCFNAFNKAADLDVLDHPILNLIYYL 264

[Close]

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot
Match: TOM3_ARATH (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana GN=TOM3 PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 7.3e-68
Identity = 121/208 (58.17%), Postives = 168/208 (80.77%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           +QL+RIQ+RVPE+ WTTQK FH +NFVVNG+RA++F   ++V  ++P+ L+ +++++P L
Sbjct: 66  IQLVRIQLRVPEYGWTTQKVFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSL 125

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
            FF+TY LLVLFWAEIYYQAR++  D L+P++  IN V+Y++QI +W+ +        VI
Sbjct: 126 AFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVI 185

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            +K+FF+ VSL AALGFL+YGGRLF+ML++FP+ES+GR+KKL EVG VTTICF CF IRC
Sbjct: 186 LSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRC 245

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYM 238
            ++ F+AFD+ A+LDVLDHPILN IYY+
Sbjct: 246 IMMCFAAFDEGANLDVLDHPILNFIYYL 273

[Close]

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot
Match: THH1_ARATH (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana GN=THH1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.8e-66
Identity = 121/208 (58.17%), Postives = 164/208 (78.85%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           +QL+RIQ+RVPE+ WTTQK FH +NF+VNG+RA++F   +    ++P+ L+ +++++P L
Sbjct: 56  IQLVRIQLRVPEYGWTTQKVFHFLNFMVNGVRALVFLFRRDAQNMQPEILQHILLDIPSL 115

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
            FF+TY LLVLFWAEIYYQAR++  D L+P++  IN V+Y+IQI +W+ +        VI
Sbjct: 116 AFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVI 175

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            +K+FF+ VSL AALGFL+YGGRLF+ML++FP+ES+GR+KKL EVG VTTICF CF IRC
Sbjct: 176 ISKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRC 235

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYM 238
            ++ F AFD  ADLDVLDHPILN IYY+
Sbjct: 236 IMMCFDAFDDAADLDVLDHPILNFIYYL 263

[Close]

BLAST of Cp4.1LG04g07070 vs. TrEMBL
Match: A0A0A0K5Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062880 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 9.9e-104
Identity = 195/225 (86.67%), Postives = 205/225 (91.11%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQLIRIQ+RVPEFEWTTQKGFHLMNF+VNGLRAILFGLYKSVFLI+PK LEMV+ME+PGL
Sbjct: 48  VQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAILFGLYKSVFLIKPKVLEMVIMEIPGL 107

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLPI KLKPTYCI+NGV+Y+IQICIWI VML  SPGAVI
Sbjct: 108 LFFSTYTLLVLFWAEIYHQARSLPISKLKPTYCIVNGVMYIIQICIWIIVMLEHSPGAVI 167

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            AKLFFSVVS SAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICF CFFIRC
Sbjct: 168 VAKLFFSVVSFSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFSCFFIRC 227

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FVLA SAFDKDADLDVLDHPILNLIYYM  V V   A +L    K
Sbjct: 228 FVLALSAFDKDADLDVLDHPILNLIYYML-VEVVPSALVLFILRK 271

[Close]

BLAST of Cp4.1LG04g07070 vs. TrEMBL
Match: B9SIP7_RICCO (Virion binding protein, putative OS=Ricinus communis GN=RCOM_0824990 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 165/225 (73.33%), Postives = 190/225 (84.44%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQL RIQ+RVPE+ WTTQK FHLMNFVVNGLRAILFG+YK VFLI+PKALE+V++++P L
Sbjct: 61  VQLFRIQLRVPEYGWTTQKVFHLMNFVVNGLRAILFGIYKDVFLIKPKALEIVLLDLPSL 120

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLPIDKL+PTY I+N  +Y IQ CIWI++ L++SP    
Sbjct: 121 LFFSTYTLLVLFWAEIYHQARSLPIDKLRPTYYIVNVFVYFIQGCIWIYIRLSRSPVGEE 180

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            AKLFFSV+S  AALGFLIYGGRLFVMLR+FPIESRGRQKKLYEVGCVT ICF CF IRC
Sbjct: 181 LAKLFFSVISFCAALGFLIYGGRLFVMLRRFPIESRGRQKKLYEVGCVTGICFTCFLIRC 240

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FV+A SAFDK AD+DVL+HP+LNLIYY   V +   A +L    K
Sbjct: 241 FVVAISAFDKKADIDVLNHPLLNLIYY-TLVEIVPSALVLFILRK 284

[Close]

BLAST of Cp4.1LG04g07070 vs. TrEMBL
Match: A0A067L8S5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24899 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.2e-86
Identity = 168/226 (74.34%), Postives = 187/226 (82.74%), Query Frame = 1


Query: 29  EVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPG 88
           E+QL RIQ+RVPE+ WTTQK FHLMNFVVNGLRAILFGLYK VF +RPKALE+V++++P 
Sbjct: 112 ELQLFRIQLRVPEYGWTTQKVFHLMNFVVNGLRAILFGLYKDVFRVRPKALEIVLLDLPS 171

Query: 89  LLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAV 148
           LLFFSTYTLLVLFWAEIY+QARSLPIDKL+PTY IING IY  Q CIWI++ L+ SP   
Sbjct: 172 LLFFSTYTLLVLFWAEIYHQARSLPIDKLRPTYYIINGFIYFTQACIWIYIRLSGSPMGE 231

Query: 149 IGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIR 208
             AKLFFSV+S   ALGFLIYGGRLFVMLR+FPIESRGRQKKLYEVG VT ICF CF IR
Sbjct: 232 ELAKLFFSVISFCIALGFLIYGGRLFVMLRRFPIESRGRQKKLYEVGFVTGICFTCFLIR 291

Query: 209 CFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           CFV+  SAFDK ADLDVLDHP+LNLIYYM  V V   A +L    K
Sbjct: 292 CFVVCISAFDKKADLDVLDHPLLNLIYYML-VEVVPSAMVLFILRK 336

[Close]

BLAST of Cp4.1LG04g07070 vs. TrEMBL
Match: M5VLE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009302mg PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.7e-85
Identity = 159/213 (74.65%), Postives = 185/213 (86.85%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQL+RIQ+RVPE+ WT QK FHLMNF+VNGLRA+LFGLYKSV LI+PKALEM++M++PGL
Sbjct: 61  VQLVRIQLRVPEYGWTIQKVFHLMNFLVNGLRAVLFGLYKSVLLIKPKALEMLLMDLPGL 120

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLP DKL+P Y IING IY  Q+CIWIF+ +++SP AV 
Sbjct: 121 LFFSTYTLLVLFWAEIYHQARSLPTDKLRPAYYIINGFIYFTQVCIWIFIRVSRSPVAVE 180

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            A++FFSV+S   ALGFLIYGGRLF+MLR FPIESRGRQKKL EVG VT IC  CF IRC
Sbjct: 181 AARIFFSVISFGTALGFLIYGGRLFIMLRHFPIESRGRQKKLEEVGWVTGICCTCFLIRC 240

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYV 243
            +LA SAFDKDAD+DV++HPILNLIYYMA+  V
Sbjct: 241 LMLAVSAFDKDADVDVVNHPILNLIYYMATEIV 273

[Close]

BLAST of Cp4.1LG04g07070 vs. TrEMBL
Match: A0A061E2E1_THECC (Tobamovirus multiplication 1 isoform 1 OS=Theobroma cacao GN=TCM_007481 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.9e-84
Identity = 164/225 (72.89%), Postives = 188/225 (83.56%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQL RIQ+RVPE+ WTTQK FHLMNF+VNGLRA+LFG YKSVFL++ KALE+V++++PGL
Sbjct: 54  VQLCRIQLRVPEYGWTTQKVFHLMNFIVNGLRAVLFGFYKSVFLVKSKALEIVLLDLPGL 113

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIYYQARSLPI+KL+PTY  ING +Y  Q CIWI V L++S  AV 
Sbjct: 114 LFFSTYTLLVLFWAEIYYQARSLPINKLRPTYYSINGFVYFAQACIWIAVRLSQSLLAVE 173

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            A+LF SV+SL AALGF+IYGGRLF MLR+FPIESRGRQKKL EVGCVT IC  CFFIRC
Sbjct: 174 IARLFISVISLCAALGFMIYGGRLFFMLRRFPIESRGRQKKLLEVGCVTGICCTCFFIRC 233

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FV+  SAFDK+ADLDVLDHPILNLIYYM  V +   A +L    K
Sbjct: 234 FVVTLSAFDKNADLDVLDHPILNLIYYML-VEILPSALVLFILRK 277

[Close]

BLAST of Cp4.1LG04g07070 vs. TAIR10
Match: AT4G21790.1 (AT4G21790.1 tobamovirus multiplication 1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-77
Identity = 151/244 (61.89%), Postives = 183/244 (75.00%), Query Frame = 1


Query: 11  FIVAGADTLNKRCCSRMEEVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKS 70
           F + GA  L     S +  VQLIRIQ+RVPE+ WTTQK FHLMNFVVNG+RA+LFG +  
Sbjct: 39  FALCGAYAL----VSAVALVQLIRIQMRVPEYGWTTQKVFHLMNFVVNGVRAVLFGFHMQ 98

Query: 71  VFLIRPKALEMVVMEVPGLLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYL 130
           VFL+ PKAL  V++++PGLLFFS YTLLVLFWAEIY+QARSLP DKL+ TY  +N  +YL
Sbjct: 99  VFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRITYISVNVAVYL 158

Query: 131 IQICIWIFVMLNKSPGAVIGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKK 190
            QI IW ++ ++ +    +  K+F +VVS  AALGFL+YGGRLF MLR+FPIES+GR+KK
Sbjct: 159 AQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKK 218

Query: 191 LYEVGCVTTICFICFFIRCFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILA 250
           L+EVG VT ICF CF IRC V+A SAFDKD  LDVLDHP+LNLIYYM  V V   A +L 
Sbjct: 219 LHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYMV-VEVLPSALVLF 277

Query: 251 TTEK 255
              K
Sbjct: 279 ILRK 277

[Close]

BLAST of Cp4.1LG04g07070 vs. TAIR10
Match: AT2G02180.1 (AT2G02180.1 tobamovirus multiplication protein 3)

HSP 1 Score: 258.8 bits (660), Expect = 4.1e-69
Identity = 121/208 (58.17%), Postives = 168/208 (80.77%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           +QL+RIQ+RVPE+ WTTQK FH +NFVVNG+RA++F   ++V  ++P+ L+ +++++P L
Sbjct: 66  IQLVRIQLRVPEYGWTTQKVFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSL 125

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
            FF+TY LLVLFWAEIYYQAR++  D L+P++  IN V+Y++QI +W+ +        VI
Sbjct: 126 AFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVI 185

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            +K+FF+ VSL AALGFL+YGGRLF+ML++FP+ES+GR+KKL EVG VTTICF CF IRC
Sbjct: 186 LSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRC 245

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYM 238
            ++ F+AFD+ A+LDVLDHPILN IYY+
Sbjct: 246 IMMCFAAFDEGANLDVLDHPILNFIYYL 273

[Close]

BLAST of Cp4.1LG04g07070 vs. TAIR10
Match: AT1G14530.1 (AT1G14530.1 Protein of unknown function (DUF1084))

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-67
Identity = 121/208 (58.17%), Postives = 164/208 (78.85%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           +QL+RIQ+RVPE+ WTTQK FH +NF+VNG+RA++F   +    ++P+ L+ +++++P L
Sbjct: 56  IQLVRIQLRVPEYGWTTQKVFHFLNFMVNGVRALVFLFRRDAQNMQPEILQHILLDIPSL 115

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
            FF+TY LLVLFWAEIYYQAR++  D L+P++  IN V+Y+IQI +W+ +        VI
Sbjct: 116 AFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVI 175

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            +K+FF+ VSL AALGFL+YGGRLF+ML++FP+ES+GR+KKL EVG VTTICF CF IRC
Sbjct: 176 ISKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRC 235

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYM 238
            ++ F AFD  ADLDVLDHPILN IYY+
Sbjct: 236 IMMCFDAFDDAADLDVLDHPILNFIYYL 263

[Close]

BLAST of Cp4.1LG04g07070 vs. NCBI nr
Match: gi|778724370|ref|XP_011658787.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 8.3e-104
Identity = 195/226 (86.28%), Postives = 206/226 (91.15%), Query Frame = 1


Query: 29  EVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPG 88
           +VQLIRIQ+RVPEFEWTTQKGFHLMNF+VNGLRAILFGLYKSVFLI+PK LEMV+ME+PG
Sbjct: 31  QVQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAILFGLYKSVFLIKPKVLEMVIMEIPG 90

Query: 89  LLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAV 148
           LLFFSTYTLLVLFWAEIY+QARSLPI KLKPTYCI+NGV+Y+IQICIWI VML  SPGAV
Sbjct: 91  LLFFSTYTLLVLFWAEIYHQARSLPISKLKPTYCIVNGVMYIIQICIWIIVMLEHSPGAV 150

Query: 149 IGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIR 208
           I AKLFFSVVS SAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICF CFFIR
Sbjct: 151 IVAKLFFSVVSFSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFSCFFIR 210

Query: 209 CFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           CFVLA SAFDKDADLDVLDHPILNLIYYM  V V   A +L    K
Sbjct: 211 CFVLALSAFDKDADLDVLDHPILNLIYYML-VEVVPSALVLFILRK 255

[Close]

BLAST of Cp4.1LG04g07070 vs. NCBI nr
Match: gi|449438197|ref|XP_004136876.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 1.4e-103
Identity = 195/225 (86.67%), Postives = 205/225 (91.11%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQLIRIQ+RVPEFEWTTQKGFHLMNF+VNGLRAILFGLYKSVFLI+PK LEMV+ME+PGL
Sbjct: 48  VQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAILFGLYKSVFLIKPKVLEMVIMEIPGL 107

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLPI KLKPTYCI+NGV+Y+IQICIWI VML  SPGAVI
Sbjct: 108 LFFSTYTLLVLFWAEIYHQARSLPISKLKPTYCIVNGVMYIIQICIWIIVMLEHSPGAVI 167

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            AKLFFSVVS SAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICF CFFIRC
Sbjct: 168 VAKLFFSVVSFSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFSCFFIRC 227

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FVLA SAFDKDADLDVLDHPILNLIYYM  V V   A +L    K
Sbjct: 228 FVLALSAFDKDADLDVLDHPILNLIYYML-VEVVPSALVLFILRK 271

[Close]

BLAST of Cp4.1LG04g07070 vs. NCBI nr
Match: gi|659110388|ref|XP_008455200.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 7.8e-102
Identity = 194/226 (85.84%), Postives = 204/226 (90.27%), Query Frame = 1


Query: 29  EVQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPG 88
           +VQLIRIQ+RVPEFEWTTQKGFHLMNF+VNGLRAILFGLYKSVFLI+PK LEMV+ME+PG
Sbjct: 31  QVQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAILFGLYKSVFLIKPKVLEMVIMEIPG 90

Query: 89  LLFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAV 148
           LLFFSTYTLLVLFWAEIY+QARSLPI KLKP YCIINGV+Y+IQI IWI VML  SPGAV
Sbjct: 91  LLFFSTYTLLVLFWAEIYHQARSLPIHKLKPAYCIINGVMYIIQIGIWIIVMLEHSPGAV 150

Query: 149 IGAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIR 208
           I AKLFFSVVS SAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICF CFFIR
Sbjct: 151 IVAKLFFSVVSFSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFSCFFIR 210

Query: 209 CFVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           CFVLA SAFDKDADLDVLDHPILNLIYYM  V V   A +L    K
Sbjct: 211 CFVLALSAFDKDADLDVLDHPILNLIYYML-VEVVPSALVLFILRK 255

[Close]

BLAST of Cp4.1LG04g07070 vs. NCBI nr
Match: gi|659110386|ref|XP_008455199.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 1.3e-101
Identity = 194/225 (86.22%), Postives = 203/225 (90.22%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQLIRIQ+RVPEFEWTTQKGFHLMNF+VNGLRAILFGLYKSVFLI+PK LEMV+ME+PGL
Sbjct: 48  VQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAILFGLYKSVFLIKPKVLEMVIMEIPGL 107

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLPI KLKP YCIINGV+Y+IQI IWI VML  SPGAVI
Sbjct: 108 LFFSTYTLLVLFWAEIYHQARSLPIHKLKPAYCIINGVMYIIQIGIWIIVMLEHSPGAVI 167

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            AKLFFSVVS SAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICF CFFIRC
Sbjct: 168 VAKLFFSVVSFSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFSCFFIRC 227

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FVLA SAFDKDADLDVLDHPILNLIYYM  V V   A +L    K
Sbjct: 228 FVLALSAFDKDADLDVLDHPILNLIYYML-VEVVPSALVLFILRK 271

[Close]

BLAST of Cp4.1LG04g07070 vs. NCBI nr
Match: gi|672164627|ref|XP_008802197.1| (PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 332.0 bits (850), Expect = 1.1e-87
Identity = 165/225 (73.33%), Postives = 192/225 (85.33%), Query Frame = 1


Query: 30  VQLIRIQVRVPEFEWTTQKGFHLMNFVVNGLRAILFGLYKSVFLIRPKALEMVVMEVPGL 89
           VQLIRIQ+RVPE+ WTTQK FHLMNFVVNGLRAILFG Y SVFL++PKALEM ++++PGL
Sbjct: 54  VQLIRIQLRVPEYGWTTQKLFHLMNFVVNGLRAILFGFYHSVFLLKPKALEMALLDLPGL 113

Query: 90  LFFSTYTLLVLFWAEIYYQARSLPIDKLKPTYCIINGVIYLIQICIWIFVMLNKSPGAVI 149
           LFFSTYTLLVLFWAEIY+QARSLP DKL+PTY IING +Y+IQICIW++V ++  P A+ 
Sbjct: 114 LFFSTYTLLVLFWAEIYHQARSLPTDKLRPTYMIINGAVYIIQICIWVYVKISPKPAAIE 173

Query: 150 GAKLFFSVVSLSAALGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGCVTTICFICFFIRC 209
            AK+F ++VS SAALGFLIYGGRLF MLR+FPIES+GRQKKL EVG VTTIC  CF +RC
Sbjct: 174 AAKVFLAIVSFSAALGFLIYGGRLFFMLRRFPIESKGRQKKLNEVGFVTTICCTCFLVRC 233

Query: 210 FVLAFSAFDKDADLDVLDHPILNLIYYMASVYVAADAYILATTEK 255
           FV++ SAFDKDADLDVLDHPILNLIYYM SV +   A +L    K
Sbjct: 234 FVVSLSAFDKDADLDVLDHPILNLIYYM-SVEILPSALVLFILRK 277

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOM1_TOBAC	3.0e-77	63.56	Tobamovirus multiplication protein 1 OS=Nicotiana tabacum GN=TOM1 PE=1 SV=1	[more]
TOM1_ARATH	1.9e-76	61.89	Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana GN=TOM1 PE=1 SV=1	[more]
TOM3_TOBAC	2.5e-68	59.62	Tobamovirus multiplication protein 3 OS=Nicotiana tabacum GN=TOM3 PE=1 SV=1	[more]
TOM3_ARATH	7.3e-68	58.17	Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana GN=TOM3 PE=1 SV=2	[more]
THH1_ARATH	1.8e-66	58.17	Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana GN=THH1 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g07070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Z8_CUCSA	9.9e-104	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062880 PE=4 SV=1	[more]
B9SIP7_RICCO	2.4e-86	73.33	Virion binding protein, putative OS=Ricinus communis GN=RCOM_0824990 PE=4 SV=1	[more]
A0A067L8S5_JATCU	4.2e-86	74.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24899 PE=4 SV=1	[more]
M5VLE7_PRUPE	2.7e-85	74.65	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009302mg PE=4 SV=1	[more]
A0A061E2E1_THECC	3.9e-84	72.89	Tobamovirus multiplication 1 isoform 1 OS=Theobroma cacao GN=TCM_007481 PE=4 SV=...	[more]

BLAST of Cp4.1LG04g07070 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21790.1	1.1e-77	61.89	tobamovirus multiplication 1	[more]
AT2G02180.1	4.1e-69	58.17	tobamovirus multiplication protein 3	[more]
AT1G14530.1	1.0e-67	58.17	Protein of unknown function (DUF1084)	[more]

BLAST of Cp4.1LG04g07070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724370\|ref\|XP_011658787.1\|	8.3e-104	86.28	PREDICTED: tobamovirus multiplication protein 1-like isoform X2 [Cucumis sativus...	[more]
gi\|449438197\|ref\|XP_004136876.1\|	1.4e-103	86.67	PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis sativus...	[more]
gi\|659110388\|ref\|XP_008455200.1\|	7.8e-102	85.84	PREDICTED: tobamovirus multiplication protein 1-like isoform X2 [Cucumis melo]	[more]
gi\|659110386\|ref\|XP_008455199.1\|	1.3e-101	86.22	PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Cucumis melo]	[more]
gi\|672164627\|ref\|XP_008802197.1\|	1.1e-87	73.33	PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Phoenix dactyli...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009457	DUF1084

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07070.1	Cp4.1LG04g07070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009457	Domain of unknown function DUF1084	PFAM	PF06454	DUF1084	coord: 29..240 score: 6.5E-101coord: 274..308 score: 4.
None	No IPR available	PANTHER	PTHR31142	FAMILY NOT NAMED	coord: 280..309 score: 1.1E-149coord: 30..237 score: 1.1E
None	No IPR available	PANTHER	PTHR31142:SF5	SUBFAMILY NOT NAMED	coord: 280..309 score: 1.1E-149coord: 30..237 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g07070	Cucsa.217960	Cucumber (Gy14) v1	cgycpeB0602
Cp4.1LG04g07070	CmaCh11G016510	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g07070	CmaCh19G002520	Cucurbita maxima (Rimu)	cmacpeB538
Cp4.1LG04g07070	CmoCh19G002730	Cucurbita moschata (Rifu)	cmocpeB493
Cp4.1LG04g07070	CmoCh11G014830	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g07070	Cla012853	Watermelon (97103) v1	cpewmB632
Cp4.1LG04g07070	Csa7G062880	Cucumber (Chinese Long) v2	cpecuB695
Cp4.1LG04g07070	MELO3C018638	Melon (DHL92) v3.5.1	cpemeB604
Cp4.1LG04g07070	ClCG09G015470	Watermelon (Charleston Gray)	cpewcgB578
Cp4.1LG04g07070	CSPI07G05570	Wild cucumber (PI 183967)	cpecpiB697
Cp4.1LG04g07070	Lsi03G007580	Bottle gourd (USVL1VR-Ls)	cpelsiB544
Cp4.1LG04g07070	MELO3C018638.2	Melon (DHL92) v3.6.1	cpemedB715
Cp4.1LG04g07070	CsaV3_7G006540	Cucumber (Chinese Long) v3	cpecucB0868
Cp4.1LG04g07070	Bhi05G000705	Wax gourd	cpewgoB0853
Cp4.1LG04g07070	CsGy7G005210	Cucumber (Gy14) v2	cgybcpeB969
Cp4.1LG04g07070	Carg24511	Silver-seed gourd	carcpeB1345

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g07070	Cp4.1LG15g02230	Cucurbita pepo (Zucchini)	cpecpeB268

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g07070	Silver-seed gourd	carcpeB0522