Cp4.1LG04g05730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g05730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mitochondrial ribosomal protein L37
Location	Cp4.1LG04 : 5603915 .. 5606525 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAACATTAAAAAAAAAAAAAAAAAAAAAAAACTAATTTAACAAAAATAAAAGAAAGAGAGATAGAGAAGAGTCCGTAGTCGAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGGTATCTTCCTCGTCCTCCTCCTTATTGTCATCTTGTTCACTGTATTTCTTTCGTAATCATGTTTAGAACGAAACATCTTTCGTAATGTGAGAATTTGGACTTACCTGGCTGTCCTTTTGATGTGTGGAGCTTCCTAATCTTGGCTGTTTATCACTAATATTATGAGGACTCAACGAATTTGAATTTTGTTGGTTCATCTTTTCCGGATTTCTTAGGTTAAATTTCGTTTTGGTTCTAGGAATTAGTTTAACATAAAAACAGATTTCGGTTTTCGTTAATCACCTTTAGACTCCAAAAACTTGAATTATTAGGCTGCAGATTCTCAAACTCCGCTTCGCGTTTCAATATCTGTTCGATTTACCATGCCAAAACTTGTAGGCTTATTAATATGATTTTGAAGGAAAATGACGATCCAAAAACTTGAATTATTGAGTATGTCTGTTTGATGATAATGGTATTATGAGTTGCAGAAGGAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGATGTAAGAATCTAACCCAAGCTTTGTTGTTATTGTTTCTTTTATTAGTTTTTTGCAGCTCTTTCTTCCATAAAAATCGTATGATTAAGGCTAAATTACAAGTTTAGTCTCTTGACTTTCGTGGTTGTTTCAATTAGATCTCTGAGCTTTTATAAGTATTTGAATCTTGACATATCCAGCGTTTTAAAAACTTCATGATTTACTAGAAACTTTGCTGAACTTGTAATTTTTCGTTTACAATCGCATCCCGGTTCACGACTTGGAACACTGGATTAGTTATATGCTTGTCATAGCTAACAAGTTTCGTGTGTGATCCGTCTTGCTATCACCTTTTCTCCCTTTTCGACATTGCTGCATTCGAAGCCTGTTTGATGTCTACTTTCTGTTAATTTCTGCAAGCATATTCAAACCCGACCAGCTCGGTGCAAGTCGATAGAATTGATAAGTACTAACAAATCTTGTTACAAACCTTCTCCTTTTGCAGAAAACATCAGTTAGGGGTCGAGTCAATCTCCATGAAAACAAGAAAGAGTATGGTTTTTTTTTTTTTTTTTTTTTTTTGNAATTGTCAAAATTTTGAATATGAATAGAACACTCTATGCCCATTAGATTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCTAAAAGGATGCTTTTGGAATCAACCGATTCCGAAATCGGTTTTCTTGACGAGTAACCAAGTGTTCGATGAAAAAAATCAAATAGCAAGCAACCCTGAAAAGAAACTATGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTCGACGCATTTTAAAGCCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCATTACAAATGGTATCAGAGCCAGATTCCGGACGATGTGCTAGCCTTCTCGCTGTTTCCCGAAGGGGGTAGATACGAGGCGGTGGGCCCCAAAGGGAGAGATTGGAGGAAAGAAAGAGTGTCAGCGAGGACGCTGGACCCCGAATGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAATAGGACAATATCTGTTAGCAATGGATCTGGGCCATTACAAAAACAAAAAGAATCCCATTAGCTACGAGGAATTGGTCGGAGTAAAATCTAGCTACGAGGAATTGGTCGGAGTAAAATCGTTAGTGACATAAACATTTGTTTGTTTTTTTGTTTCGATGTTTCTATGATGAGAAGTTTGGTGTAAAATCGTTAGTGACATAAACATCAGTTTGTTTGTTTGTTTGTTTCGATGTTTGTATGATGAGAAGTTTTGTGTTTCATTGAATATCGACCATGTATATAATATCGAACATCTGTCTTTTTTTTTTTTTTTTTTTACACTCCAATTGGTTTTAGAATTTCATGTGTGTTTATTCATCAATGATATTTTTACAACATTTATTC

mRNA sequence

TTAAACATTAAAAAAAAAAAAAAAAAAAAAAAACTAATTTAACAAAAATAAAAGAAAGAGAGATAGAGAAGAGTCCGTAGTCGAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGAAGGAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGATAAAACATCAGTTAGGGGTCGAGTCAATCTCCATGAAAACAAGAAAGAGTATGGTTTTTTTTTTTTTTTTTTTTTTTTGNAATTGTCAAAATTTTGAATATGAATAGAACACTCTATGCCCATTAGATTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCTAAAAGGATGCTTTTGGAATCAACCGATTCCGAAATCGGTTTTCTTGACGAGTAACCAAGTGTTCGATGAAAAAAATCAAATAGCAAGCAACCCTGAAAAGAAACTATGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTCGACGCATTTTAAAGCCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCATTACAAATGGTATCAGAGCCAGATTCCGGACGATGTGCTAGCCTTCTCGCTGTTTCCCGAAGGGGGTAGATACGAGGCGGTGGGCCCCAAAGGGAGAGATTGGAGGAAAGAAAGAGTGTCAGCGAGGACGCTGGACCCCGAATGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAATAGGACAATATCTGTTAGCAATGGATCTGGGCCATTACAAAAACAAAAAGAATCCCATTAGCTACGAGGAATTGGTCGGAGTAAAATCTAGCTACGAGGAATTGGTCGGAGTAAAATCGTTAGTGACATAAACATTTGTTTGTTTTTTTGTTTCGATGTTTCTATGATGAGAAGTTTGGTGTAAAATCGTTAGTGACATAAACATCAGTTTGTTTGTTTGTTTGTTTCGATGTTTGTATGATGAGAAGTTTTGTGTTTCATTGAATATCGACCATGTATATAATATCGAACATCTGTCTTTTTTTTTTTTTTTTTTTACACTCCAATTGGTTTTAGAATTTCATGTGTGTTTATTCATCAATGATATTTTTACAACATTTATTC

Coding sequence (CDS)

ATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGA

Protein sequence

MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRARIKENNSSKAKN

Homology

[Close]

BLAST of Cp4.1LG04g05730 vs. TrEMBL
Match: A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-47
Identity = 100/131 (76.34%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTTV 62
           MSQ+RL RR+++ + ++LI+LT+VRTFAAGGK K    GGAA DAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 63  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 122
           VGANILKEGADPK+MADSEYP WLW L++K P LSELRRK+A++LPY DLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 123 RIKENNSSKAK 134
           RIKENNS KAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of Cp4.1LG04g05730 vs. TrEMBL
Match: F6I5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 98/135 (72.59%), Postives = 113/135 (83.70%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGK-KKGSKGGGAATDAPKASILSKEVKS 60
           M M++I+ VR S++ T+E  ++L   RTFA GGK KKGSKGGGA+ DAPKAS LSKEVKS
Sbjct: 6   MTMNRIKSVR-SIIITRE-AVRLVGCRTFAVGGKAKKGSKGGGAS-DAPKASTLSKEVKS 65

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TT VGANILK+G DPKV+ DSEYPDWLW L+DKRPALSELRRK  ++LPYE LKRFVKLD
Sbjct: 66  TTTVGANILKDGTDPKVLPDSEYPDWLWHLLDKRPALSELRRKSVESLPYEALKRFVKLD 125

Query: 121 TRARIKENNSSKAKN 135
            RARIKENN+ KAKN
Sbjct: 126 NRARIKENNNLKAKN 137

[Close]

BLAST of Cp4.1LG04g05730 vs. TrEMBL
Match: B9GJB3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36310g PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-41
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAM+ I+ +R  ++ TKE  + + + RTF+AG KKKG KG GAA DAPKAS L KEVKST
Sbjct: 1   MAMNCIKSLR-GIVITKE-AVGIVDRRTFSAGAKKKGGKG-GAAADAPKASSLGKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           T VGANILK+G DPKV+ DSEYPDWLWRL+DKRPALSELRRK+ +TLP+EDLKRFVKLD 
Sbjct: 61  TTVGANILKDGTDPKVLDDSEYPDWLWRLLDKRPALSELRRKNIETLPFEDLKRFVKLDN 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENN SKAKN
Sbjct: 121 RARIKENNFSKAKN 131

[Close]

BLAST of Cp4.1LG04g05730 vs. TrEMBL
Match: C6SYP3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-41
Identity = 98/134 (73.13%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAM++ R +R  +L TKE ++ +   RTFA G  KKGSKG GAA DAPKAS LSKEVKS+
Sbjct: 1   MAMNRARYIRH-ILTTKE-VVGVACQRTFATGKAKKGSKG-GAAADAPKASTLSKEVKSS 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEG DPK+  DSEYPDWLW L+DKRPALSELRR++  TL YEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGTDPKIQPDSEYPDWLWHLLDKRPALSELRRRNIDTLSYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNS KAKN
Sbjct: 121 RARIKENNSVKAKN 131

[Close]

BLAST of Cp4.1LG04g05730 vs. TrEMBL
Match: A0A0B2RJC8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-41
Identity = 98/134 (73.13%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAM++ R +R  +L TKE ++ +   RTFA G  KKGSKG GAA DAPKAS LSKEVKS+
Sbjct: 1   MAMNRARYIRH-ILTTKE-VVGVACQRTFATGKAKKGSKG-GAAADAPKASTLSKEVKSS 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEG DPK+  DSEYPDWLW L+DKRPALSELRR++  TL YEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGTDPKIQPDSEYPDWLWHLLDKRPALSELRRRNIDTLSYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNS KAKN
Sbjct: 121 RARIKENNSVKAKN 131

[Close]

BLAST of Cp4.1LG04g05730 vs. TAIR10
Match: AT3G01740.1 (AT3G01740.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-40
Identity = 88/134 (65.67%), Postives = 109/134 (81.34%), Query Frame = 1


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKK--KGSKGGGAATDAPKASILSKEVKST 62
           M++I L+R S   + +D+++    RTFAA   K  KG KGGGA+ DAPK S L+KE+KST
Sbjct: 1   MNRIGLIRGS---SSKDVVR----RTFAAAASKAKKGGKGGGAS-DAPKGSSLTKEIKST 60

Query: 63  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 122
           TVVGAN LK+G+DPK++ DS+YPDWLW L+DKRPALSELRRK+ +TLPY+DLKRFVKLDT
Sbjct: 61  TVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDT 120

Query: 123 RARIKENNSSKAKN 135
           R +IKENNS KAKN
Sbjct: 121 RGKIKENNSIKAKN 126

[Close]

BLAST of Cp4.1LG04g05730 vs. TAIR10
Match: AT5G14290.1 (AT5G14290.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-34
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 1


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFA-AGGKKKGSKGGGAATDAPKASILSKEVKSTT 62
           M+ IR+   S+  +K D+++    RTFA A GK K    G    DAPKAS LSKE+KS+ 
Sbjct: 1   MNLIRMFGDSISRSK-DVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 63  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 122
           VV AN LK+G DPK++ +S++PD+LW L+DKRPALSELRRK+ +TL ++DLKRFVKLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 123 ARIKENNSSKAKN 135
           ARIKEN+S KAKN
Sbjct: 121 ARIKENHSIKAKN 132

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: gi|659083110|ref|XP_008442187.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-47
Identity = 101/133 (75.94%), Postives = 116/133 (87.22%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           M +SQIR  RR+++ + +DLI+LT+VR+FAAGGK K    GGAA DAPKASILSKEVKST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 121 RARIKENNSSKAK 134
           RARIKENNS KAK
Sbjct: 121 RARIKENNSIKAK 133

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: gi|659083108|ref|XP_008442186.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-47
Identity = 101/133 (75.94%), Postives = 116/133 (87.22%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           M +SQIR  RR+++ + +DLI+LT+VR+FAAGGK K    GGAA DAPKASILSKEVKST
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 87

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLDT
Sbjct: 88  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 147

Query: 121 RARIKENNSSKAK 134
           RARIKENNS KAK
Sbjct: 148 RARIKENNSIKAK 160

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: gi|778695065|ref|XP_004144674.2| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 9.0e-47
Identity = 100/131 (76.34%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTTV 62
           MSQ+RL RR+++ + ++LI+LT+VRTFAAGGK K    GGAA DAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 63  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 122
           VGANILKEGADPK+MADSEYP WLW L++K P LSELRRK+A++LPY DLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 123 RIKENNSSKAK 134
           RIKENNS KAK
Sbjct: 121 RIKENNSIKAK 131

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: gi|697104018|ref|XP_009605816.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Nicotiana tomentosiformis])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 97/135 (71.85%), Postives = 117/135 (86.67%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGG-KKKGSKGGGAATDAPKASILSKEVKS 60
           MA+S I+ +R +  N  +++I++   RTFA GG KKKG KGGGA+ DAPKAS +SKEVK+
Sbjct: 1   MALSYIKSLRNA--NFLKEVIQIGGCRTFAVGGGKKKGGKGGGAS-DAPKASSISKEVKA 60

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           +TVVGANILK+GADPKV+ADSEYPDWLW L+DKRPALSELRRKD ++LPY+DLKRFVKLD
Sbjct: 61  STVVGANILKDGADPKVLADSEYPDWLWHLLDKRPALSELRRKDLESLPYDDLKRFVKLD 120

Query: 121 TRARIKENNSSKAKN 135
           TRARIKENNS +AKN
Sbjct: 121 TRARIKENNSIRAKN 132

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: gi|698435687|ref|XP_009800845.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Nicotiana sylvestris])

HSP 1 Score: 179.5 bits (454), Expect = 3.9e-42
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 1


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGG-KKKGSKGGGAATDAPKASILSKEVKS 60
           MA++ I+ +R   ++  +++I++   RTFA GG KKKG KGGGA+ DAPKAS +SKEVK+
Sbjct: 1   MALTYIKSLRN--VSFPKEVIQIGGCRTFAVGGGKKKGGKGGGAS-DAPKASSISKEVKA 60

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           +TVVGANILK+GADPKV+ADSEYPDWLW L+DKRPALSELRRKD ++LPY+DLKRFVKLD
Sbjct: 61  STVVGANILKDGADPKVLADSEYPDWLWHLLDKRPALSELRRKDLESLPYDDLKRFVKLD 120

Query: 121 TRARIKENNSSKAKN 135
           TRARIKENNS KAKN
Sbjct: 121 TRARIKENNSIKAKN 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g05730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g05730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYS4_CUCSA	6.3e-47	76.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1	[more]
F6I5L7_VITVI	2.3e-41	72.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=...	[more]
B9GJB3_POPTR	3.0e-41	72.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36310g PE=4 SV=1	[more]
C6SYP3_SOYBN	3.0e-41	73.13	Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1	[more]
A0A0B2RJC8_GLYSO	3.0e-41	73.13	Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g05730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01740.1	1.8e-40	65.67	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	5.5e-34	59.40	Mitochondrial ribosomal protein L37	[more]

BLAST of Cp4.1LG04g05730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083110\|ref\|XP_008442187.1\|	4.1e-47	75.94	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
gi\|659083108\|ref\|XP_008442186.1\|	4.1e-47	75.94	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]	[more]
gi\|778695065\|ref\|XP_004144674.2\|	9.0e-47	76.34	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus]	[more]
gi\|697104018\|ref\|XP_009605816.1\|	1.3e-42	71.85	PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Nicotiana tomentosifor...	[more]
gi\|698435687\|ref\|XP_009800845.1\|	3.9e-42	71.11	PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013870	Ribosomal_L37_mit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0071577	zinc II ion transmembrane transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005385	zinc ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g05730.1	Cp4.1LG04g05730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 54..93 score: 2.4
None	No IPR available	PANTHER	PTHR28595	FAMILY NOT NAMED	coord: 23..134 score: 3.0
None	No IPR available	PANTHER	PTHR28595:SF1	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 23..134 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g05730	CmaCh11G014830	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g05730	CmoCh11G016380	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g05730	Carg15580	Silver-seed gourd	carcpeB0519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g05730	Cucurbita pepo (Zucchini)	cpecpeB367
Cp4.1LG04g05730	Cucurbita pepo (Zucchini)	cpecpeB477
Cp4.1LG04g05730	Cucurbita pepo (Zucchini)	cpecpeB491
Cp4.1LG04g05730	Cucumber (Gy14) v1	cgycpeB0418
Cp4.1LG04g05730	Cucurbita maxima (Rimu)	cmacpeB151
Cp4.1LG04g05730	Cucurbita maxima (Rimu)	cmacpeB289
Cp4.1LG04g05730	Cucurbita moschata (Rifu)	cmocpeB128
Cp4.1LG04g05730	Cucurbita moschata (Rifu)	cmocpeB251
Cp4.1LG04g05730	Wild cucumber (PI 183967)	cpecpiB672
Cp4.1LG04g05730	Cucumber (Chinese Long) v2	cpecuB669
Cp4.1LG04g05730	Bottle gourd (USVL1VR-Ls)	cpelsiB569
Cp4.1LG04g05730	Bottle gourd (USVL1VR-Ls)	cpelsiB573
Cp4.1LG04g05730	Watermelon (Charleston Gray)	cpewcgB613
Cp4.1LG04g05730	Watermelon (97103) v1	cpewmB657
Cp4.1LG04g05730	Melon (DHL92) v3.5.1	cpemeB626
Cp4.1LG04g05730	Melon (DHL92) v3.5.1	cpemeB640
Cp4.1LG04g05730	Cucumber (Gy14) v2	cgybcpeB117
Cp4.1LG04g05730	Cucumber (Gy14) v2	cgybcpeB414
Cp4.1LG04g05730	Melon (DHL92) v3.6.1	cpemedB739
Cp4.1LG04g05730	Melon (DHL92) v3.6.1	cpemedB762
Cp4.1LG04g05730	Silver-seed gourd	carcpeB0513
Cp4.1LG04g05730	Silver-seed gourd	carcpeB0614
Cp4.1LG04g05730	Silver-seed gourd	carcpeB1457
Cp4.1LG04g05730	Cucumber (Chinese Long) v3	cpecucB0804
Cp4.1LG04g05730	Cucumber (Chinese Long) v3	cpecucB0837
Cp4.1LG04g05730	Wax gourd	cpewgoB0843