Carg15580 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15580
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein L37, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_059 : 329559 .. 331345 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGTCCGTAGTGTAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGGTATCTTCCTCGTCCTCCTCCTTATTGTCATCTTGTTCACTGTATTTCTTTCGTAATCATGTTTAGAACGAAACATCTTTGGTAATGTGAGAATTTGGACTTACATGGCTGTCCTTTTGATGTGTGGAGCTTCCTAATCTTGGCTGTTTATCACTAATGTTATGAGAACTCAACGAATTTGAATTGTGTTGGTTCATCTTTTCCGGATTTCTTAGGTTAAATTTCGTTTTGGTTCTAGGAATTAGTTTAACATAAAAACAGATTTCGATTTTCGTTAATCACCTTTAGACTCCAAAAACTTGAATTATTAGGTTGCAGATTCTCAAACTCCGCTTCGCGTTTCAATATCTGTTCGATTTACCATGCCAAAACTTGTAGGCTTATTAATATGATTTTGAAGGAAAATGACGATCCAAAAACATGAATTATGGAGTATGTCTGTTTGATGATAATGGTATTATGAGTTGCAGAAGAAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATAGCAAAGAAGATCTGATAAAACTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCGAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGATGTAAGAATCTAACCCAAGCTTTGTTTTTATTGTTTCTTTTATTAGTTTTTTGCAGCTCTTTCGGCTAAATTACAAGTTTAGTCTCTTGAATTTCGTGGTTGTTTCAATTAGATCTCTCAGGTTTTATAAGTATTTGAATCTTGACATATCCAGCGTTTTAAAAACTTCATGATTTACTAGAAACTTTGCTCAACTTGTAATTTTTCGTTTACAACCGCATCCCGGTTCACGACTTGGAACACTGGATTAGTTATATGCTTGTCGTAAAATCATGATGAGGAGATGTAGAATATGGAAGGATTATCTATCAATAGCTAACAAGTCTCGTGTGTGATCTGTCTTGCTATCACCTTTTCTCCCTTTGCGACATTGCTGCATTCGAAGTCTATTTGATGTCTACTTTCTGTTAATTTCTGCAAGCATATTCAAACCCGACTAGCTCGACGCAAGTCGATAGAATTGATAAGTACTAACAAATCTTGTTACAAACCTTCTCCTTTTGCAGAACATATCAGTTAAAAGTCGAGTCAATCTCCATGTGGAAGGAAGAACAAGCAAAAGCTTACACAACAAGGGCAAAGCATTTTAGATCTGTAAGCTATCATCTTATTGTCAAAAAGTACTTAACTTCTGATTCACTACTCGTTTTTTAGTTGAATTGTCAAAATTTTGAATATGAATAGAACACACACTCTGCCCACTAGACTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCCAAAAGGATGCTTTCGGAATCAACCGATTC

mRNA sequence

AGAAGAGTCCGTAGTGTAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGAAGAAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATAGCAAAGAAGATCTGATAAAACTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCGAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGAAACATATCAGTTAAAAGTCGAGTCAATCTCCATGTGGAAGGAAGAACAAGCAAAAGCTTACACAACAAGGGCAAAGCATTTTAGATCTGTAAGCTATCATCTTATTGTCAAAAAGTACTTAACTTCTGATTCACTACTCGTTTTTTAGTTGAATTGTCAAAATTTTGAATATGAATAGAACACACACTCTGCCCACTAGACTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCCAAAAGGATGCTTTCGGAATCAACCGATTC

Coding sequence (CDS)

ATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATAGCAAAGAAGATCTGATAAAACTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCGAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGA

Protein sequence

MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRARIKENNSSKAKN

Homology

[Close]

BLAST of Carg15580 vs. NCBI nr
Match: XP_023530063.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-63
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLN+KEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 134

[Close]

BLAST of Carg15580 vs. NCBI nr
Match: XP_022928329.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 242.7 bits (618), Expect = 7.3e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLN+K DLIKLTNVRTFAAGGKKKGSKG GAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSEL+RKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 133

[Close]

BLAST of Carg15580 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAMSQIRL RRSLLN+K DLIKLTNVRTFAAGGKKKGSKG GAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLFRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKG-GAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 132

[Close]

BLAST of Carg15580 vs. NCBI nr
Match: XP_022154133.1 (54S ribosomal protein L37, mitochondrial-like [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAMSQ RL  RS++N+K D IK+T+VRTFAAGGKKKGSKG GAA D PKASILSKEVKS+
Sbjct: 1   MAMSQSRLF-RSIINAK-DAIKVTSVRTFAAGGKKKGSKG-GAAADGPKASILSKEVKSS 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD 
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDN 120

Query: 121 RARIKENNSSKAKN 135
           RA IKENNS KAKN
Sbjct: 121 RASIKENNSIKAKN 131

[Close]

BLAST of Carg15580 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-47
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGK-KKGSKGXGAATDAPKASILSKEVKS 60
           M +SQIR  RR+++ S +DLI+LT+VR+FAAGGK KKGSKG GAA DAPKASILSKEVKS
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKG-GAAADAPKASILSKEVKS 87

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLD
Sbjct: 88  TTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLD 147

Query: 121 TRARIKENNSSKAK 134
           TRARIKENNS KAK
Sbjct: 148 TRARIKENNSIKAK 160

[Close]

BLAST of Carg15580 vs. TAIR10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37)

HSP 1 Score: 147.5 bits (371), Expect = 5.8e-36
Identity = 69/89 (77.53%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 46  DAPKASILSKEVKSTTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAK 105
           DAPK S L+KE+KSTTVVGAN LK+G+DPK++ DS+YPDWLW L+DKRPALSELRRK+ +
Sbjct: 38  DAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVE 97

Query: 106 TLPYEDLKRFVKLDTRARIKENNSSKAKN 135
           TLPY+DLKRFVKLDTR +IKENNS KAKN
Sbjct: 98  TLPYDDLKRFVKLDTRGKIKENNSIKAKN 126

[Close]

BLAST of Carg15580 vs. TAIR10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-34
Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 3   MSQIRLVRRSLLNSKEDLIKLTNVRTF--AAGGKKKGSKGXGAATDAPKASILSKEVKST 62
           M+ IR+   S+  SK D+++    RTF  AAG  KK  +G G   DAPKAS LSKE+KS+
Sbjct: 1   MNLIRMFGDSISRSK-DVMRFVCQRTFATAAGKAKKVGRGDG-GNDAPKASNLSKEIKSS 60

Query: 63  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 122
            VV AN LK+G DPK++ +S++PD+LW L+DKRPALSELRRK+ +TL ++DLKRFVKLDT
Sbjct: 61  MVVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDT 120

Query: 123 RARIKENNSSKAKN 135
           RARIKEN+S KAKN
Sbjct: 121 RARIKENHSIKAKN 132

[Close]

BLAST of Carg15580 vs. TrEMBL
Match: tr|A0A1S3B544|A0A1S3B544_CUCME (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGK-KKGSKGXGAATDAPKASILSKEVKS 60
           M +SQIR  RR+++ S +DLI+LT+VR+FAAGGK KKGSKG GAA DAPKASILSKEVKS
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKG-GAAADAPKASILSKEVKS 60

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLD
Sbjct: 61  TTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLD 120

Query: 121 TRARIKENNSSKAK 134
           TRARIKENNS KAK
Sbjct: 121 TRARIKENNSIKAK 133

[Close]

BLAST of Carg15580 vs. TrEMBL
Match: tr|A0A1S4DUD4|A0A1S4DUD4_CUCME (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGK-KKGSKGXGAATDAPKASILSKEVKS 60
           M +SQIR  RR+++ S +DLI+LT+VR+FAAGGK KKGSKG GAA DAPKASILSKEVKS
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKG-GAAADAPKASILSKEVKS 87

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLD
Sbjct: 88  TTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLD 147

Query: 121 TRARIKENNSSKAK 134
           TRARIKENNS KAK
Sbjct: 148 TRARIKENNSIKAK 160

[Close]

BLAST of Carg15580 vs. TrEMBL
Match: tr|A0A0A0KYS4|A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.0e-47
Identity = 105/132 (79.55%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 3   MSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGK-KKGSKGXGAATDAPKASILSKEVKSTT 62
           MSQ+RL RR+++ S ++LI+LT+VRTFAAGGK KKGSKG GAA DAPKASILSKEVKSTT
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKG-GAAADAPKASILSKEVKSTT 60

Query: 63  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 122
           VVGANILKEGADPK+MADSEYP WLW L++K P LSELRRK+A++LPY DLKRF+KLDTR
Sbjct: 61  VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTR 120

Query: 123 ARIKENNSSKAK 134
           ARIKENNS KAK
Sbjct: 121 ARIKENNSIKAK 131

[Close]

BLAST of Carg15580 vs. TrEMBL
Match: tr|A0A2I4DPL9|A0A2I4DPL9_9ROSI (uncharacterized protein LOC108982239 isoform X1 OS=Juglans regia OX=51240 GN=LOC108982239 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-42
Identity = 102/134 (76.12%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAM+ +R V R ++ SKE  I++T  RT++AG  KKGSKG  AA+DAPKASILSKEVKST
Sbjct: 15  MAMNHVRSV-RGIIVSKE-AIRVTCQRTYSAGKAKKGSKG-SAASDAPKASILSKEVKST 74

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILK+GADPK++ADSEYPDWL  LIDKRPALSELRRK+ +TLPYEDLKRFVKLD 
Sbjct: 75  TVVGANILKDGADPKILADSEYPDWLRHLIDKRPALSELRRKNIETLPYEDLKRFVKLDN 134

Query: 121 RARIKENNSSKAKN 135
           RARIKENNS KAKN
Sbjct: 135 RARIKENNSIKAKN 145

[Close]

BLAST of Carg15580 vs. TrEMBL
Match: tr|A0A2I4DPL8|A0A2I4DPL8_9ROSI (uncharacterized protein LOC108982239 isoform X2 OS=Juglans regia OX=51240 GN=LOC108982239 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-42
Identity = 102/134 (76.12%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGXGAATDAPKASILSKEVKST 60
           MAM+ +R V R ++ SKE  I++T  RT++AG  KKGSKG  AA+DAPKASILSKEVKST
Sbjct: 1   MAMNHVRSV-RGIIVSKE-AIRVTCQRTYSAGKAKKGSKG-SAASDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILK+GADPK++ADSEYPDWL  LIDKRPALSELRRK+ +TLPYEDLKRFVKLD 
Sbjct: 61  TVVGANILKDGADPKILADSEYPDWLRHLIDKRPALSELRRKNIETLPYEDLKRFVKLDN 120

Query: 121 RARIKENNSSKAKN 135
           RARIKENNS KAKN
Sbjct: 121 RARIKENNSIKAKN 131

The following BLAST results are available for this feature:

BLAST of Carg15580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530063.1	2.7e-63	99.25	54S ribosomal protein L37, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928329.1	7.3e-61	97.01	54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331...	[more]
XP_022989738.1	1.8e-59	97.01	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_022154133.1	1.1e-48	83.58	54S ribosomal protein L37, mitochondrial-like [Momordica charantia]	[more]
XP_016899597.1	2.7e-47	79.10	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]	[more]

BLAST of Carg15580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01740.1	5.8e-36	77.53	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	2.4e-34	60.45	Mitochondrial ribosomal protein L37	[more]

BLAST of Carg15580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B544\|A0A1S3B544_CUCME	1.8e-47	79.10	54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUD4\|A0A1S4DUD4_CUCME	1.8e-47	79.10	39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KYS4\|A0A0A0KYS4_CUCSA	4.0e-47	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1	[more]
tr\|A0A2I4DPL9\|A0A2I4DPL9_9ROSI	2.3e-42	76.12	uncharacterized protein LOC108982239 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4DPL8\|A0A2I4DPL8_9ROSI	2.3e-42	76.12	uncharacterized protein LOC108982239 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013870	Ribosomal_L37_mit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15580-RA	Carg15580-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 54..96 e-value: 5.7E-13 score: 49.3
None	No IPR available	PANTHER	PTHR28595	FAMILY NOT NAMED	coord: 4..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15580	CmaCh11G014830	Cucurbita maxima (Rimu)	carcmaB0520
Carg15580	CmoCh11G016380	Cucurbita moschata (Rifu)	carcmoB0502
Carg15580	Cp4.1LG04g05730	Cucurbita pepo (Zucchini)	carcpeB0519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15580	Silver-seed gourd	carcarB387
Carg15580	Silver-seed gourd	carcarB397
Carg15580	Silver-seed gourd	carcarB399
Carg15580	Cucumber (Gy14) v2	carcgybB0374
Carg15580	Cucumber (Gy14) v2	carcgybB0375
Carg15580	Cucumber (Gy14) v1	carcgyB0427
Carg15580	Cucurbita maxima (Rimu)	carcmaB0518
Carg15580	Cucurbita maxima (Rimu)	carcmaB0519
Carg15580	Cucurbita maxima (Rimu)	carcmaB0521
Carg15580	Cucurbita moschata (Rifu)	carcmoB0503
Carg15580	Cucurbita moschata (Rifu)	carcmoB0504
Carg15580	Cucurbita pepo (Zucchini)	carcpeB0520
Carg15580	Cucurbita pepo (Zucchini)	carcpeB0516
Carg15580	Cucurbita pepo (Zucchini)	carcpeB0518
Carg15580	Wild cucumber (PI 183967)	carcpiB0399
Carg15580	Wild cucumber (PI 183967)	carcpiB0400
Carg15580	Cucumber (Chinese Long) v2	carcuB0394
Carg15580	Cucumber (Chinese Long) v2	carcuB0395
Carg15580	Cucumber (Chinese Long) v3	carcucB0398
Carg15580	Cucumber (Chinese Long) v3	carcucB0399
Carg15580	Bottle gourd (USVL1VR-Ls)	carlsiB335
Carg15580	Bottle gourd (USVL1VR-Ls)	carlsiB337
Carg15580	Melon (DHL92) v3.5.1	carmeB0371
Carg15580	Melon (DHL92) v3.5.1	carmeB0373
Carg15580	Melon (DHL92) v3.6.1	carmedB0376
Carg15580	Melon (DHL92) v3.6.1	carmedB0378
Carg15580	Watermelon (Charleston Gray)	carwcgB0361
Carg15580	Watermelon (Charleston Gray)	carwcgB0362
Carg15580	Watermelon (97103) v1	carwmB0360
Carg15580	Watermelon (97103) v1	carwmB0363
Carg15580	Watermelon (97103) v2	carwmbB0387
Carg15580	Watermelon (97103) v2	carwmbB0388
Carg15580	Wax gourd	carwgoB0453