Cp4.1LG04g03560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7260409 .. 7261666 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTTTATTGTTGGATATAGATAAAAGAAAATATATTTGTTACCTAAATATTGGATACATAAGCAAAATACTCTTACAATTTTCTCTCTTATACATCCAACCGTGCACTTTTAAATTGTGGTGGTAGTTTTATCGAATAATTTTTTCAAACAAGTGGGATGTTATTAATGCAAGCAGGTCGAGACAATTAGGTAAAACGAGACCTTTACGTCACCTAATTGCCTTCACCTCAACATGCTTCGGGCTTGGGGTCAGACACGTATCTGTTGGCTGTTGAGTTGTATGGAAAGTCGTATGATTTGACTCGTAACCATAATTTTTGAATGATATCTATATATTGTGGTGATTACATTCAACAATTTTTTGTTAATACAAAAATTAAGAATACTCGATATTTTTTAAATTTTCTTCTAGAAGGTTGACTTAGCTTGGTTTGAACTTGATTGCCATCAACACTAACACAACTAAGAAAATTATGGAGGTCATATTAATTCATGAAAATGACCCCTATTCGGGGGACATCAATTATTAAAGTCAACAATTTCAACTCCATTATTTGACTATACACACTTGTTGATTTTTTTTTTTTTTTAAGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGGTTCACCCACCGATTACGAGAACTGCATCACCACAACTAGATAAGTGATCCAACGACATCTTCCCAAAAAACGAGGTATGATTTTTGTCACTTGAAATATTCTAATACCCAAACAAAGATTCCTAGGTAGTTTAATGGGCTAAGTCAAGCTTCGACAGCGACACGCGACACCGTGAATAACATCTACACTTCCAACTTGTAACTACTCGACCAATAGTGTCCCATCCTCTAGCTTCGACCTTAGCTCGACAAGGGCGAAAGTTGACAAAACCAAGTTAATGGCCTAGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

mRNA sequence

ATGGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

Coding sequence (CDS)

ATGGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

Protein sequence

MVQIKSTSRLYTVVTFYVTRTSHHWKRSNIDSVTRKTPTYGTIPAKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDDAIVELPYWCANGAEVGGRVVGGRCNFFVEVDQTSIPHATIPT
Homology
[Close]
BLAST of Cp4.1LG04g03560 vs. TrEMBL
Match: A0A0A0K6W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044860 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-10
Identity = 49/113 (43.36%), Postives = 55/113 (48.67%), Query Frame = 1 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDD------------AIVEL----- 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL+             AI +L     
Sbjct: 131 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSETAKTSRNLYAIGDLEIGSS 190

Query: 105 -----------PYWCAN------------------GAEVGGRVVGGRCNFFVE 112
                        W A+                  GA+VGGRVVGG CNF  E
Sbjct: 191 RKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 243

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: gi|778723861|ref|XP_004144580.2| (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 49/113 (43.36%), Postives = 55/113 (48.67%), Query Frame = 1 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDD------------AIVEL----- 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL+             AI +L     
Sbjct: 131 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSETAKTSRNLYAIGDLEIGSS 190

Query: 105 -----------PYWCAN------------------GAEVGGRVVGGRCNFFVE 112
                        W A+                  GA+VGGRVVGG CNF  E
Sbjct: 191 RKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 243

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: gi|659110774|ref|XP_008455404.1| (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 49/113 (43.36%), Postives = 55/113 (48.67%), Query Frame = 1 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDD------------AIVEL----- 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL+             AI +L     
Sbjct: 130 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSEMAKTSRNLYAIGDLEIGSS 189

Query: 105 -----------PYWCAN------------------GAEVGGRVVGGRCNFFVE 112
                        W A+                  GA+VGGRVVGG CNF  E
Sbjct: 190 KKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6W4_CUCSA2.6e-1043.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044860 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778723861|ref|XP_004144580.2|3.7e-1043.36PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis sativus][more]
gi|659110774|ref|XP_008455404.1|3.7e-1043.36PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03560.1Cp4.1LG04g03560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03560CsaV3_7G003820Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03560Carg19085Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03560Silver-seed gourdcarcpeB0047
Cp4.1LG04g03560Silver-seed gourdcarcpeB0217
Cp4.1LG04g03560Silver-seed gourdcarcpeB1223
Cp4.1LG04g03560Cucumber (Chinese Long) v3cpecucB0855
Cp4.1LG04g03560Wax gourdcpewgoB0852
Cp4.1LG04g03560Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03560Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG04g03560Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03560Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03560Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03560Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03560Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03560Cucurbita maxima (Rimu)cmacpeB574
Cp4.1LG04g03560Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03560Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03560Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03560Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03560Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03560Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03560Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03560Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03560Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03560Watermelon (97103) v1cpewmB666
Cp4.1LG04g03560Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03560Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03560Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03560Melon (DHL92) v3.6.1cpemedB773