Cp4.1LG04g00470 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pre-mRNA-splicing factor SF2-like protein
Location	Cp4.1LG04 : 1659233 .. 1664215 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAAAGCAGAGGATTGTAGCCCATACTTCATGTTGCATTATAAAAGGAAAACCTGGCTTTGGCATCGCACTTTAGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTCTCTAGCCCTAAAATTACCAGGTATAGATTTCTCTCTTCTAATTTTCATTCTCTTTTCGAATTGTTGATTTTGATTCTTGATTCTTGATTGAAGAAAGAACAAGAAAGAAAGCAAAAAGATCTCGTAATTTCGCGTGTTGATTTTCTTTTTCATTTCGATTTTGTGTTAATTTTGATAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGGTTATTCTCCTCCATCCTTCTTTTAATCTATGCGATGTTGTTTCATTTTATGATGCAATTTTTATTAACATTTATTCTTATCCTTTTCAAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGGTTTGATTTCCTCAAATAATTATCTTTATATAATCCTACTTGTTTTGGTGAAATTTTAGTGCTTAAAACCGAAACCCTAAACCGGGTCGTTTGAAACACGTGCTAAAAAAATCCAAGNCCCCCCCCCCGACTAATTCTAGTTTGATTGCAGTATGGACCGATTGTCGACATTGATTTGAAGATTCCCCCACGCCCACCGGGCTATGCTTTTGTGGAGGTGAGGTTAAATCTTGACGCTTTTGGAACCCCGTCTCTCTGGCAGGAACATTTTTCATCGGAGTCCCTTCAAATTGGTGTCTTATCGTTTTGGGTGTTTAACGAATTTAAATAGTTGTACTGAGCTGTCGGTGATCCTTAATGGAAAACCTTTATTGTCTTCTTATTTTTTCAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTAATTTGCAACACACACCTGCTGAAATTATTCTCCAATGATGTCTTATCCACGTATCGAAATATGATGTTGCGATCCTTGTTTTGTAGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGGTATGTATTTTATTTACTTTTACTGTCAAAATGTGATGATACTGTTGTCATGATATTTTGTTTGTACAGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGTAAGCACAATTTTTCTATTTCAGGAAATAACCTACTATTATGCTAAGTTCTCCATTTCTTTGTTCGATCATATCCACCTTGTTAAATAGAAGCAAAATACATGGCTTCACTCTCTTCTACTAATTGGTAGTTTGTTTTTTGAATTTAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGTATGTCATGTTGACTTACTTGTCCTCCTATTCTCTCTAACATATGGCCCTGTGCAAGTTTCATTTGAACTCGTGGTATTATTATTATTTTTCTTTTGCTGGAATGGAATGCACGTTTAACCTTTAGAAATCCTCATGGGTTGATAATAGTATTCCAATAGCAACCTTCATTTTTTCTTTCTCAAGAAAAGATCATTCTTATTTCTAAACACCTTCCAGCCTTGATTAAGATGAGGTCAGTACGGGGTGTCCTGATTGGTTCTATCTCAAAAAAAGGAAAAGAAAAAGAAAAAAGAAAAAGGAAATAAAGGAAAAAGAAAAAAAGGATGTGAAATCTAGAATAACCACTCCACGACTAGTTTAGTTGTAAGGTCGATTGATCTGAATTCCACGACTCTCTTAAGTACATGGGGCCACAACTAAAAGCTCTTTTTTTTCATACACGTTACTCAAATCTTGTGGTCAAATCTGGATTCTCTTGAAACTGCTTTAGTATTTTGGCCATTCCATCAAGTTACTGATATCCAATTTTTATTTTTACCTCCTGCTATTGAGATGGTCAAAATAGAAATTGGACAACAATGACTTGATGGATGGCGTAACTTTTATTTTTACTTCCTGCTATTGAGATGGTAGATCCTTTTTTCATTATTTATTTATTTTTATCAATTATATTTAATGAGGTCTATAATTGTGTTTTGTTAAAAAAAAAAAAGTCTTCAACACTTCATAAGGGATTTGTTTCTTGAAATATGTGCAGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTGTAAGTTGCTTTTTAGACGGTTTTACTTGTAATGTCTTTTCTGGAAGATTTGCTTCATGTTTAATGGTGTCAGTCTTTGTTTTATATTCTGCGTTTGTGTGGTAATATATGTTATTTATGTTTGTCATTTGTAATCTGGCTTATTTCTGCAGATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTATGTGGATTGGACGCTTATTTATTGTGCTAAATTCTGTTTTGTTACTAATAATTTGTGTAACAATACGCACAGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGGTATGTTTTGGTTTGCTTGCAAAGTAAAGATTAAAATGATGAATCATGAAAAATTAAAATGGCACAATATTTTGTTTTGTAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTTTGCGGAATTCCCTTATCATTATTATTTAATCTTCCTTTCCTAAGAACAGTATCTGAATTCACTGTTGCTTTGGTGCTGCTATTCTTTTATAAAATGGATGTCTAGTCTAGGCTTGTGTTTTCCCAGTGCTGGTTCCCATATCTCTTTAATCTGGACAGCTTTATATGTTGACATCTCTACAAATATGTTAAAGTTGTGCTTGCTTACTGCCTGTTGTATGGGACCACCGATTTGTGGTCATCAAGTCTCTTCATGATGACATAAGGGCATTTGTTGTTTCTTGTTGGAAAATGTGTGGTGGCACTTTCTGTTTTTTTATTTTTTTCTTGAAATGTTCTCAGAATCAGAAATAATAAGTGTTCTTAAGTCACTTAAGTCAGCTCTTCTTGAGTAAATAAGTGGGAAAAGGAAATAAGAAATGGAAGGAACACATAAAAGCAAAGATAGGTGGCAACCAATGGGGTTCAGGAGAATCTGCTTGTAGACATTGTTTTGATGATGCAAGGATTCTTGAATTTCATACACTTCATTTGCAATTTTCCTGATTTATGGTCGCTATTTTTTCCCCAAAACTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAATATTTTTACTTTTCCTTTGGGTATGCTCGGGGTTAACAAAACAGAAGCTTATTGGTTTGGGCAGTCATCATTGTTTGTTTATGTTTTTTGCTAGATATGGGCTTTTGCGGAATAATTGAGACTTGTTAGGGGCTTGAGAGATGTGGTGCTCAATGTTCTTCTTTCAACTCTTTGGTTGTTGAGGTAATACAGTTTTGTTGATGAGCACCCAGACACATCCTCAATGATAATGATTCTTTCCCTTCCCTTATATGCATGTTTTCCCAGTTACTGCCAACACAATGGAAAAGCTCGTTGAGTTGCAATACTATTGTTTGCTACGTTGAGAATTAGTCCTCTGTACATCGGTTCTACATTAGTTTGGGTTATAGTTTGAATGTTCTTCCCTCTCACTGTTTTGCTGCCTGTGTTTATTTGCTTTCATTCTTACTTATAATCAACTCTTGATGGGCTGGGATGAAAGAATTGAGCTTGGAAACCAGTCTTCTATGTATTTATTGTTGTTGAGCTTGGAAACAAATTCTCTTTGGATAATCTTATGATTCTTTTGGTTATTGATTCCAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTGTAAGCAGCCTTCCCCTTTCCTGGATTTCCTTGTGTCTATGGATAAGGTTTCACTTCTGGTTCTCATTGTTTTGTTTATTGCTGCAGCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGTAATATCCTGATTCAGAACATGTGCATATTTCTCTAAACTCAGATAGCATCTGTTCCCGAAGTTTTGTATTCATGATTTGATTTTTGACTTGAACAGGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAGATCATATTGTTATTGAGATGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGCTGGATTTAATGTGTGTGTGTTATGGGTGACTAGTATTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATATTTCACTTCAGAATTACCAAATGAATTTCTCGTGTCAAAATTTTAATAAACAATTTACTTTCTTATCGTCGTCCTTTTTTAAGTTTAGGAAGAAGTCCCAATTTCTTCCTCAAATGAATGGATCATCTTTGGGACCTTCCAATGAACGGTCCATACTTCATGGCCCTATTACGCTAATAAGATCAATGCATCAGCTGCATTGCATGGACAGTCTT

mRNA sequence

ATGGTGCTGAAAGCAGAGGATTGTAGCCCATACTTCATGTTGCATTATAAAAGGAAAACCTGGCTTTGGCATCGCACTTTAGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTCTCTAGCCCTAAAATTACCAGAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAGATCATATTGTTATTGAGATGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGCTGGATTTAATGTGTGTGTGTTATGGGTGACTAGTATTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATATTTCACTTCAGAATTACCAAATGAATTTCTCGTGTCAAAATTTTAATAAACAATTTACTTTCTTATCGTCGTCCTTTTTTAAGTTTAGGAAGAAGTCCCAATTTCTTCCTCAAATGAATGGATCATCTTTGGGACCTTCCAATGAACGGTCCATACTTCATGGCCCTATTACGCTAATAAGATCAATGCATCAGCTGCATTGCATGGACAGTCTT

Coding sequence (CDS)

ATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTTGAAGATGTTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACAAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGTAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTATACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTTTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCATGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCAGATCTCTTTCACCTGAAGGGAGATCTGATCGAAGCCGAAGTCGAAGCCAATCTGTTGATTCCAGGGATCGATATTCAGAATAG

Protein sequence

MSSRNSRTIYVGNLPGDIRLREVEDLFYKFEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE

Homology

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BLAST of Cp4.1LG04g00470 vs. Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.7e-70
Identity = 175/287 (60.98%), Postives = 197/287 (68.64%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGY FDGCRLRVE AHGGR   S S+D YS S S+    SRR+DYRVLVTGLPPS
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRR-FSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY
Sbjct: 121 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           +RV+EY+S RS SRSP  D  +S  SRS SR P          S+SRS S +RS+     
Sbjct: 181 IRVREYES-RSVSRSP--DDSKSYRSRSRSRGP-----SCSYSSKSRSVSPARSI----- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSI-SEQSQSKSLSRSRSRSRSGSPVS 265
                     SPR +   RS S+ S  S+S+S S+SRSRSRS SPVS
Sbjct: 241 ----------SPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 9.1e-66
Identity = 174/324 (53.70%), Postives = 202/324 (62.35%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK                      FE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRG--------GHSSSIDHYSRSG----SSRGGVSRRT 120
           AI GRDGY  DGCRLRVE AHGGRG        G+      Y   G    S+R GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLP SASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S RS SRSPSR       SRS SRS      RSRSR R RS
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSR-------SRSRSRS------RSRSRGRGRS 240

Query: 241 RSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR 291
            S+SRSL RS S     +  S SPR                +SLSRS S+SRS SP   +
Sbjct: 241 HSRSRSLSRSKS---PRKDLSKSPR----------------RSLSRSISKSRSPSPDKKK 292

[Close]

BLAST of Cp4.1LG04g00470 vs. Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-65
Identity = 181/334 (54.19%), Postives = 207/334 (61.98%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K                      F+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGG-----------VSRRTD 120
           AI+GRDGY FDG RLRVE AHGGR   SS     S +G  RGG            SRR++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR--RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 120

Query: 121 YRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           +RVLVTGLP SASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD
Sbjct: 121 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR+  SRSPSR      YS+S SRS    RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSNGYVRVREYDSRKD-SRSPSRG---RSYSKSRSRS----RGRSVSRSRSRSR 240

Query: 241 SQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRS---RSRSRSGSPVS 299
           S+SR                 SP+ K SRRSP       +KS SRS   RS+SRS SP  
Sbjct: 241 SRSR-----------------SPKAKSSRRSP-------AKSTSRSPGPRSKSRSPSP-- 288

[Close]

BLAST of Cp4.1LG04g00470 vs. Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.4e-63
Identity = 164/291 (56.36%), Postives = 183/291 (62.89%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYS------RSGSSRGG----VSRRTDY 120
           AIYGRDGY FDG  LRVE AHGGR     +   YS      R G   GG     SRR++Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDS 180
           RV+V+GLP SASWQDLKDHMR+ G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRS 240
           EFRNAFS  YVRV+EYDSRR               SRSPS      RGRS S+SRSR RS
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD--------------SRSPS------RGRSYSKSRSRGRS 240

Query: 241 QSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRS 260
            SRS  RS S     RS S SP+ K  RRSP+ S     +S SRS+SRS S
Sbjct: 241 PSRSRSRSRS-----RSKSRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. Swiss-Prot
Match: SRS1B_DANRE (Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.6e-46
Identity = 127/268 (47.39%), Postives = 153/268 (57.09%), Query Frame = 1


Query: 2   SSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAEDA 61
           +  N   IYVGNLP DIR ++VED+FYK                      FED RDAEDA
Sbjct: 10  AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69

Query: 62  IYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGV----------SRRTDYR 121
           +YGRDGY +DG RLRVEF   GRGG         R G   GGV          SRR++YR
Sbjct: 70  VYGRDGYDYDGYRLRVEFPRSGRGG--------GRGGGGGGGVGAPRGRYGPPSRRSEYR 129

Query: 122 VLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSE 181
           V+V+GLPPS SWQDLKDHMR AGDVC+++VFRD     G+V++   +DM YA+RKLD+++
Sbjct: 130 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTK 189

Query: 182 FR-NAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRS 237
           FR +    AY+RVK                   D  RSPS       GRSRSRSRSRSRS
Sbjct: 190 FRSHEGETAYIRVK------------------VDGPRSPS------YGRSRSRSRSRSRS 242

[Close]

BLAST of Cp4.1LG04g00470 vs. TrEMBL
Match: A0A0A0M1I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569330 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 6.2e-122
Identity = 269/336 (80.06%), Postives = 280/336 (83.33%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSS+D YSRSGSSRGGV RRTDYRVLVTGLP S
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSR SYSRSPS DSR+SDYSRSPSRSPY  RGRS+SRSRSRSRS+SR       
Sbjct: 181 VRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSR------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQ--SQSKSLSRSRSRSRSGSPVSSRHERKIQNRSR 300
            S+SGRSTS SPR KHSRRS S+SEQ  S+S+S SRSRSRSRS SPVSSRH     +R R
Sbjct: 241 -SYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHR---ASRPR 300

Query: 301 SRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 313
           SRS+SRS SRSLSP  RSD  RSRSQSVDSRD+YSE
Sbjct: 301 SRSRSRSKSRSLSPNVRSD--RSRSQSVDSRDQYSE 322

[Close]

BLAST of Cp4.1LG04g00470 vs. TrEMBL
Match: M5VZF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 212/318 (66.67%), Postives = 235/318 (73.90%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDH---YSRSGSSRGGVSRRTDYRVLVTGL 120
           AIYGRDGY FDG RLRVE AHGGR GHSSS+D    YS S SSR G SRR+DYRVLVTGL
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGR-GHSSSMDRYSSYSHSSSSR-GASRRSDYRVLVTGL 120

Query: 121 PPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFS 180
           PPSASWQDLKDHMRRAGDVCFS+VFRD+GGM GIVDYTNYDDM+YAIRKLDDSEF+NAFS
Sbjct: 121 PPSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFS 180

Query: 181 RAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIR 240
           RAY+RVKEYDSRRSYSRSPS D R+S YSRSPSRSPY  R +SRSR              
Sbjct: 181 RAYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPYTSRSQSRSR-------------- 240

Query: 241 SHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRS 294
             S+S+ GR  S SP  K+   SPS+S   +S S SR+RSR+RS SPVSS   R +   S
Sbjct: 241 --SYSYGGRIRSISPEAKYLHCSPSVS-YPRSVSRSRARSRTRSRSPVSSASPRTL---S 295

[Close]

BLAST of Cp4.1LG04g00470 vs. TrEMBL
Match: V4T0Q8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002007mg PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.0e-84
Identity = 212/322 (65.84%), Postives = 231/322 (71.74%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGD R+REVEDLFYK                      FED RDAED
Sbjct: 1   MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSR--SGSSRGGVSRRTDYRVLVTGLP 120
           AI GRDGY FDG RLRVE AHGGR  HSSS+D YS   SG SRG VSRR+DYRVLVTGLP
Sbjct: 61  AIRGRDGYNFDGYRLRVELAHGGRR-HSSSVDRYSSYSSGGSRG-VSRRSDYRVLVTGLP 120

Query: 121 PSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
            SASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYT+YDDMKYAIRKLD SEFRNAFSR
Sbjct: 121 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 180

Query: 181 AYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRS 240
           +YVRV+EYDSRRSYSRSPSR             SPY  R RSRS   SRSRS SRS    
Sbjct: 181 SYVRVREYDSRRSYSRSPSR-------------SPYYSRSRSRSPYYSRSRSPSRSW--- 240

Query: 241 HSHSHSGRSTSFSPRLKHSRRSPSIS------EQSQSKSLSRS--RSRSRSGSPVSSRHE 291
              S+S RS S+SPR K+SRRSPS+S      ++S S S  RS  RSRSRS SP+SS   
Sbjct: 241 ---SYSPRSRSYSPRGKYSRRSPSLSPARSASQRSPSGSPPRSFSRSRSRSSSPLSSPRS 297

[Close]

BLAST of Cp4.1LG04g00470 vs. TrEMBL
Match: A0A151U4T3_CAJCA (Pre-mRNA-splicing factor SF2 OS=Cajanus cajan GN=KK1_006981 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 8.8e-84
Identity = 192/273 (70.33%), Postives = 204/273 (74.73%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R+SRTIYVGNLPGDIRLREVEDLFYK                      FED RDAED
Sbjct: 1   MSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRG--GVSRRTDYRVLVTGLP 120
           AI  RDGY FDG RLRVE AHGGRG HSSS+D YS    S G  GVSRR+DYRVLVTGLP
Sbjct: 61  AIQYRDGYNFDGFRLRVELAHGGRG-HSSSVDRYSSYSGSSGSRGVSRRSDYRVLVTGLP 120

Query: 121 PSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
           PSASWQDLKDHMR+AGDVCFS+VFR+RGGM GIVDYTNYDDMKYAIRKLDDSEFRNAFSR
Sbjct: 121 PSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180

Query: 181 AYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRS 240
           AY+RV+EYD  R YSRSPS DSR+S YSRS SRSPY       SRSRSRSRSQ       
Sbjct: 181 AYIRVREYD--RGYSRSPSHDSRRS-YSRSLSRSPY------ISRSRSRSRSQ------- 240

Query: 241 HSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKS 250
            SHS+S RS SFSP+ KHSRRS S+S     KS
Sbjct: 241 -SHSYSDRSRSFSPKAKHSRRSISLSRSVSIKS 255

[Close]

BLAST of Cp4.1LG04g00470 vs. TrEMBL
Match: M5W0G3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.5e-83
Identity = 189/282 (67.02%), Postives = 209/282 (74.11%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDH---YSRSGSSRGGVSRRTDYRVLVTGL 120
           AIYGRDGY FDG RLRVE AHGGR GHSSS+D    YS S SSR G SRR+DYRVLVTGL
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGR-GHSSSMDRYSSYSHSSSSR-GASRRSDYRVLVTGL 120

Query: 121 PPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFS 180
           PPSASWQDLKDHMRRAGDVCFS+VFRD+GGM GIVDYTNYDDM+YAIRKLDDSEF+NAFS
Sbjct: 121 PPSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFS 180

Query: 181 RAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIR 240
           RAY+RVKEYDSRRSYSRSPS D R+S YSRSPSRSPY  R +SRSR              
Sbjct: 181 RAYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPYTSRSQSRSR-------------- 240

Query: 241 SHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRS 258
             S+S+ GR  S SP  K+   SPS+   S  +S+SRSR+RS
Sbjct: 241 --SYSYGGRIRSISPEAKYLHCSPSV---SYPRSVSRSRARS 260

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR10
Match: AT1G09140.1 (AT1G09140.1 SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-71
Identity = 175/287 (60.98%), Postives = 197/287 (68.64%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGY FDGCRLRVE AHGGR   S S+D YS S S+    SRR+DYRVLVTGLPPS
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRR-FSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY
Sbjct: 121 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           +RV+EY+S RS SRSP  D  +S  SRS SR P          S+SRS S +RS+     
Sbjct: 181 IRVREYES-RSVSRSP--DDSKSYRSRSRSRGP-----SCSYSSKSRSVSPARSI----- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSI-SEQSQSKSLSRSRSRSRSGSPVS 265
                     SPR +   RS S+ S  S+S+S S+SRSRSRS SPVS
Sbjct: 241 ----------SPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR10
Match: AT3G49430.1 (AT3G49430.1 SER/ARG-rich protein 34A)

HSP 1 Score: 251.9 bits (642), Expect = 5.1e-67
Identity = 174/324 (53.70%), Postives = 202/324 (62.35%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK                      FE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRG--------GHSSSIDHYSRSG----SSRGGVSRRT 120
           AI GRDGY  DGCRLRVE AHGGRG        G+      Y   G    S+R GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLP SASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S RS SRSPSR       SRS SRS      RSRSR R RS
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSR-------SRSRSRS------RSRSRGRGRS 240

Query: 241 RSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSR 291
            S+SRSL RS S     +  S SPR                +SLSRS S+SRS SP   +
Sbjct: 241 HSRSRSLSRSKS---PRKDLSKSPR----------------RSLSRSISKSRSPSPDKKK 292

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-66
Identity = 181/334 (54.19%), Postives = 207/334 (61.98%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K                      F+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGG-----------VSRRTD 120
           AI+GRDGY FDG RLRVE AHGGR   SS     S +G  RGG            SRR++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR--RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 120

Query: 121 YRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           +RVLVTGLP SASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD
Sbjct: 121 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR+  SRSPSR      YS+S SRS    RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSNGYVRVREYDSRKD-SRSPSRG---RSYSKSRSRS----RGRSVSRSRSRSR 240

Query: 241 SQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRS---RSRSRSGSPVS 299
           S+SR                 SP+ K SRRSP       +KS SRS   RS+SRS SP  
Sbjct: 241 SRSR-----------------SPKAKSSRRSP-------AKSTSRSPGPRSKSRSPSP-- 288

[Close]

BLAST of Cp4.1LG04g00470 vs. TAIR10
Match: AT4G02430.2 (AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 241.9 bits (616), Expect = 5.3e-64
Identity = 164/291 (56.36%), Postives = 183/291 (62.89%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYS------RSGSSRGG----VSRRTDY 120
           AIYGRDGY FDG  LRVE AHGGR     +   YS      R G   GG     SRR++Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDS 180
           RV+V+GLP SASWQDLKDHMR+ G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRS 240
           EFRNAFS  YVRV+EYDSRR               SRSPS      RGRS S+SRSR RS
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD--------------SRSPS------RGRSYSKSRSRGRS 240

Query: 241 QSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRS 260
            SRS  RS S     RS S SP+ K  RRSP+ S     +S SRS+SRS S
Sbjct: 241 PSRSRSRSRS-----RSKSRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLS 263

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: gi|659099466|ref|XP_008450613.1| (PREDICTED: pre-mRNA-splicing factor SF2 [Cucumis melo])

HSP 1 Score: 451.1 bits (1159), Expect = 1.6e-123
Identity = 269/334 (80.54%), Postives = 278/334 (83.23%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSS+D YSRSGSSRGGV RRTDYRVLVTGLP S
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSR SYSRSPS DSR+SDYSRSPS SPY  RGRS+SRSRSRSRS+         
Sbjct: 181 VRVKEYDSRHSYSRSPSLDSRRSDYSRSPSGSPYRGRGRSQSRSRSRSRSR--------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR 300
            S+SGRSTS SPR KHSRRS SISEQS S+S SRSRSRSRS SPVSSRH     +R RSR
Sbjct: 241 -SYSGRSTSLSPRHKHSRRSRSISEQSLSRSRSRSRSRSRSRSPVSSRHR---ASRPRSR 300

Query: 301 SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 313
           S+SRS SRSLSP  RSDRSRSRSQSVDSRD+YSE
Sbjct: 301 SRSRSKSRSLSPNVRSDRSRSRSQSVDSRDQYSE 320

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: gi|778662425|ref|XP_011659887.1| (PREDICTED: serine/arginine-rich splicing factor SR30 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 8.9e-122
Identity = 269/336 (80.06%), Postives = 280/336 (83.33%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK                      FEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS 120
           AIYGRDGYKFDGCRLRVEFAHGGRG HSSS+D YSRSGSSRGGV RRTDYRVLVTGLP S
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRG-HSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSS 120

Query: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180
           ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
Sbjct: 121 ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY 180

Query: 181 VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS 240
           VRVKEYDSR SYSRSPS DSR+SDYSRSPSRSPY  RGRS+SRSRSRSRS+SR       
Sbjct: 181 VRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSR------- 240

Query: 241 HSHSGRSTSFSPRLKHSRRSPSISEQ--SQSKSLSRSRSRSRSGSPVSSRHERKIQNRSR 300
            S+SGRSTS SPR KHSRRS S+SEQ  S+S+S SRSRSRSRS SPVSSRH     +R R
Sbjct: 241 -SYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHR---ASRPR 300

Query: 301 SRSKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE 313
           SRS+SRS SRSLSP  RSD  RSRSQSVDSRD+YSE
Sbjct: 301 SRSRSRSKSRSLSPNVRSD--RSRSQSVDSRDQYSE 322

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: gi|595826943|ref|XP_007205653.1| (hypothetical protein PRUPE_ppa009360mg [Prunus persica])

HSP 1 Score: 340.5 bits (872), Expect = 3.1e-90
Identity = 212/318 (66.67%), Postives = 235/318 (73.90%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDH---YSRSGSSRGGVSRRTDYRVLVTGL 120
           AIYGRDGY FDG RLRVE AHGGR GHSSS+D    YS S SSR G SRR+DYRVLVTGL
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGR-GHSSSMDRYSSYSHSSSSR-GASRRSDYRVLVTGL 120

Query: 121 PPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFS 180
           PPSASWQDLKDHMRRAGDVCFS+VFRD+GGM GIVDYTNYDDM+YAIRKLDDSEF+NAFS
Sbjct: 121 PPSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFS 180

Query: 181 RAYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIR 240
           RAY+RVKEYDSRRSYSRSPS D R+S YSRSPSRSPY  R +SRSR              
Sbjct: 181 RAYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPYTSRSQSRSR-------------- 240

Query: 241 SHSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRS 294
             S+S+ GR  S SP  K+   SPS+S   +S S SR+RSR+RS SPVSS   R +   S
Sbjct: 241 --SYSYGGRIRSISPEAKYLHCSPSVS-YPRSVSRSRARSRTRSRSPVSSASPRTL---S 295

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: gi|645222096|ref|XP_008246433.1| (PREDICTED: pre-mRNA-splicing factor SF2 isoform X1 [Prunus mume])

HSP 1 Score: 339.7 bits (870), Expect = 5.3e-90
Identity = 211/317 (66.56%), Postives = 232/317 (73.19%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF K                      FED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSR--SGSSRGGVSRRTDYRVLVTGLP 120
           AIYGRDGY FDG RLRVE AHGGRG HSSS+D YS     SS  G SRR+DYRVLVTGLP
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGRG-HSSSMDRYSSYSHSSSSHGASRRSDYRVLVTGLP 120

Query: 121 PSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
           PSASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYTNYDDM+YAIRKLDDSEF+NAFSR
Sbjct: 121 PSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSR 180

Query: 181 AYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRS 240
           AY+RVKEYDSRRSYSRSPS D R+S YSRSPSRSPY  R +SRSR               
Sbjct: 181 AYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPYMSRSQSRSR--------------- 240

Query: 241 HSHSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSR 294
            S+S+ GR  S SP  K+  RSPS S   +S S SR+RSR+RS SPVSS   R +   SR
Sbjct: 241 -SYSYGGRIRSISPEAKYLHRSPSAS-YPRSVSRSRARSRTRSRSPVSSARPRTL---SR 295

[Close]

BLAST of Cp4.1LG04g00470 vs. NCBI nr
Match: gi|567881737|ref|XP_006433427.1| (hypothetical protein CICLE_v10002007mg [Citrus clementina])

HSP 1 Score: 321.6 bits (823), Expect = 1.5e-84
Identity = 212/322 (65.84%), Postives = 231/322 (71.74%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK----------------------FEDVRDAED 60
           MSSR+SRT+YVGNLPGD R+REVEDLFYK                      FED RDAED
Sbjct: 1   MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSR--SGSSRGGVSRRTDYRVLVTGLP 120
           AI GRDGY FDG RLRVE AHGGR  HSSS+D YS   SG SRG VSRR+DYRVLVTGLP
Sbjct: 61  AIRGRDGYNFDGYRLRVELAHGGRR-HSSSVDRYSSYSSGGSRG-VSRRSDYRVLVTGLP 120

Query: 121 PSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
            SASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYT+YDDMKYAIRKLD SEFRNAFSR
Sbjct: 121 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 180

Query: 181 AYVRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRS 240
           +YVRV+EYDSRRSYSRSPSR             SPY  R RSRS   SRSRS SRS    
Sbjct: 181 SYVRVREYDSRRSYSRSPSR-------------SPYYSRSRSRSPYYSRSRSPSRSW--- 240

Query: 241 HSHSHSGRSTSFSPRLKHSRRSPSIS------EQSQSKSLSRS--RSRSRSGSPVSSRHE 291
              S+S RS S+SPR K+SRRSPS+S      ++S S S  RS  RSRSRS SP+SS   
Sbjct: 241 ---SYSPRSRSYSPRGKYSRRSPSLSPARSASQRSPSGSPPRSFSRSRSRSSSPLSSPRS 297

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR30_ARATH	2.7e-70	60.98	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 S...	[more]
SR34A_ARATH	9.1e-66	53.70	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2...	[more]
SR34_ARATH	2.0e-65	54.19	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 S...	[more]
SR34B_ARATH	9.4e-63	56.36	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2...	[more]
SRS1B_DANRE	3.6e-46	47.39	Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b PE=2 SV=1	[more]

BLAST of Cp4.1LG04g00470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1I3_CUCSA	6.2e-122	80.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569330 PE=4 SV=1	[more]
M5VZF1_PRUPE	2.2e-90	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1	[more]
V4T0Q8_9ROSI	1.0e-84	65.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002007mg PE=4 SV=1	[more]
A0A151U4T3_CAJCA	8.8e-84	70.33	Pre-mRNA-splicing factor SF2 OS=Cajanus cajan GN=KK1_006981 PE=4 SV=1	[more]
M5W0G3_PRUPE	1.5e-83	67.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09140.1	1.5e-71	60.98	SERINE-ARGININE PROTEIN 30	[more]
AT3G49430.1	5.1e-67	53.70	SER/ARG-rich protein 34A	[more]
AT1G02840.1	1.1e-66	54.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02430.2	5.3e-64	56.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG04g00470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099466\|ref\|XP_008450613.1\|	1.6e-123	80.54	PREDICTED: pre-mRNA-splicing factor SF2 [Cucumis melo]	[more]
gi\|778662425\|ref\|XP_011659887.1\|	8.9e-122	80.06	PREDICTED: serine/arginine-rich splicing factor SR30 [Cucumis sativus]	[more]
gi\|595826943\|ref\|XP_007205653.1\|	3.1e-90	66.67	hypothetical protein PRUPE_ppa009360mg [Prunus persica]	[more]
gi\|645222096\|ref\|XP_008246433.1\|	5.3e-90	66.56	PREDICTED: pre-mRNA-splicing factor SF2 isoform X1 [Prunus mume]	[more]
gi\|567881737\|ref\|XP_006433427.1\|	1.5e-84	65.84	hypothetical protein CICLE_v10002007mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006376	mRNA splice site selection
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0035061	interchromatin granule
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016604	nuclear body
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00470.1	Cp4.1LG04g00470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 90..152 score: 9.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..56 score: 0.015coord: 89..160 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 88..166 score: 9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 34..66 score: 2.0E-6coord: 84..176 score: 5.0E-26coord: 2..33 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 5..155 score: 1.28
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 27..170 score: 6.5E-18coord: 296..309 score: 6.5
None	No IPR available	PANTHER	PTHR24012:SF487	SUBFAMILY NOT NAMED	coord: 27..170 score: 6.5E-18coord: 296..309 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00470	Cucsa.181840	Cucumber (Gy14) v1	cgycpeB0500
Cp4.1LG04g00470	CmaCh10G011280	Cucurbita maxima (Rimu)	cmacpeB089
Cp4.1LG04g00470	CmaCh11G011470	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g00470	CmoCh10G012080	Cucurbita moschata (Rifu)	cmocpeB065
Cp4.1LG04g00470	CmoCh11G011890	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00470	Csa1G569330	Cucumber (Chinese Long) v2	cpecuB656
Cp4.1LG04g00470	MELO3C015299	Melon (DHL92) v3.5.1	cpemeB622
Cp4.1LG04g00470	CSPI01G26390	Wild cucumber (PI 183967)	cpecpiB659
Cp4.1LG04g00470	Lsi06G001030	Bottle gourd (USVL1VR-Ls)	cpelsiB564
Cp4.1LG04g00470	MELO3C015299.2	Melon (DHL92) v3.6.1	cpemedB735
Cp4.1LG04g00470	CsaV3_1G038750	Cucumber (Chinese Long) v3	cpecucB0817
Cp4.1LG04g00470	Bhi02G001722	Wax gourd	cpewgoB0904
Cp4.1LG04g00470	CsGy1G025650	Cucumber (Gy14) v2	cgybcpeB129
Cp4.1LG04g00470	Carg25021	Silver-seed gourd	carcpeB0347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g00470	Cucurbita pepo (Zucchini)	cpecpeB366
Cp4.1LG04g00470	Watermelon (Charleston Gray)	cpewcgB600
Cp4.1LG04g00470	Watermelon (97103) v1	cpewmB643