Cp4.1LG03g18260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g18260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 12108989 .. 12110390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCGTTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATCGCTAAGACCGTACTGAAATCGCGTAATTTTCTCTTGCATTTCCTCTGTTTCTCTCTAATTATCTTGTTTTGATTTTGCGATTTCCTAATGCTGAGAGTTCGCATCATAGGTAGATTAGTTGCTCATTGTTAAGTGAAAGTGATTGTTTGCGAGTCTCTTCGAGTAATTTACGTATGATTATATTTCCGAATAACTTAATCTTTTCGAATGCGCATTCTTCGCATTCTGTGAGCATATTGAGCGAGTAATGAGTATGTTGCTAACAGTGAAATGTAGAAGAGTTACGAGATTGAACTGGACGCATGGATAAATCAGAGCACATTCGTCGAATGTAAGTATTGGATCCGATGTATACAAGCACGAGGAGAAAAAGGAGGGATACCATGTTATTTCCAGTAGTGCACCTGTTGATACCAGTTCATCTAAAACGTGAGTTAAATTCATTTTTGTTTCTCATTTTTCTGATTTGAGTTAATACCAGTTCATCTAACCATGTTATCTTCCATGAAGCATTTTTTCTATAATTCCAGTTGATTCCAGTTGATTCCGGTTGAGCAATTGTTTAAATATCCAATGTCTCGTCTAATGATTTATTGATTATCATTTAAAATCAAAACTCTACTAATCTGGTCTTTGGGATTTCTCTTTCATTAGATTATTTAACATAAACAGTGAATTTGACCTGTAACCATGCTAACTGCTTCAGTAGTTGCTGTAATCAACGCCATCTTCAAAAATTTGTTGTGTAGAACTGATTTTCTTGCCTTGCTTTGTAGTTTAGTGAATCCGAGATGCATTTGACTCTCAAAGGAACCGATACCTCTTCTTCTTCCTCACTCATTTCTAGATCTTTTATGTTTTGGCAGTGAGAAGTCTCCAAATGGATTGCCTTATCCTCTTTCTATTGCGCTAGTAATAATTGGATGCAGTTTAGTATTCCCTTTTAAATTTTATCATCAAATCCAACTAAGTTCATTCATTTTATGGTTACAAAGAATTACAACTGAGAAATATATAAATTTCATGAAACTAGATTACTTTTTTTTGACTTGCAGGTGCATTTGATAGGAACTACAGACCACGGTTTTCAGTAGCTTAGATGCACAATGAACCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCGGTGACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG

mRNA sequence

ATGAAGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCGTTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATCGCTAAGACCGTACTGAAATCGCGTGCATTTGATAGGAACTACAGACCACGATGCACAATGAACCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCGGTGACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG

Coding sequence (CDS)

ATGAAGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCGTTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTAATCGCTAAGACCGTACTGAAATCGCGTGCATTTGATAGGAACTACAGACCACGATGCACAATGAACCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCGGTGACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG

Protein sequence

MKKREREMEGLVVRSPFVSTGKKLRFSPLLDSLPSCSASGSVIAKTVLKSRAFDRNYRPRCTMNLSNVSAPSVTCWPGGMSDRTSAIPRAFLNLPVPPVTDKCDEGLPILYTP
Homology
[Close]
BLAST of Cp4.1LG03g18260 vs. TrEMBL
Match: A0A0A0L826_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133280 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 1 

Query: 8  MEGLVVRSPFVSTGKKLRFSPLLDSLPSCSASGSVIAKTVLKSRAFDRNYRPRCTMNLSN 67
          MEGLVVRSPFVSTGKKL FSPLLDSLPSCSASG V ++TV  S    R  R   T   S 
Sbjct: 1  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 68 VSAPSVTCWPGG 80
            + +V+    G
Sbjct: 61 AHSSNVSIGSDG 72

[Close]
BLAST of Cp4.1LG03g18260 vs. NCBI nr
Match: gi|659075928|ref|XP_008438406.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 

Query: 8  MEGLVVRSPFVSTGKKLRFSPLLDSLPSCSASGSVIAKTVLKS 51
          MEGLVVRSPFVSTGKKL FSPLLDSLPSCSASGSV +KTV  S
Sbjct: 1  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFSKTVSTS 43

[Close]
BLAST of Cp4.1LG03g18260 vs. NCBI nr
Match: gi|778677976|ref|XP_011650895.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 1 

Query: 8  MEGLVVRSPFVSTGKKLRFSPLLDSLPSCSASGSVIAKTVLKSRAFDRNYRPRCTMNLSN 67
          MEGLVVRSPFVSTGKKL FSPLLDSLPSCSASG V ++TV  S    R  R   T   S 
Sbjct: 1  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 68 VSAPSVTCWPGG 80
            + +V+    G
Sbjct: 61 AHSSNVSIGSDG 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g18260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g18260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L826_CUCSA1.8e-1058.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133280 PE=4 SV=1[more]
BLAST of Cp4.1LG03g18260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g18260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075928|ref|XP_008438406.1|1.1e-1088.37PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo][more]
gi|778677976|ref|XP_011650895.1|2.6e-1058.33PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g18260.1Cp4.1LG03g18260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g18260CmoCh14G019110Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g18260MELO3C006344.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g18260Bhi01G000008Wax gourdcpewgoB0798
Cp4.1LG03g18260CsGy3G011290Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g18260Carg06267Silver-seed gourdcarcpeB1331
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g18260Cp4.1LG08g03010Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g18260Cucumber (Gy14) v2cgybcpeB231
Cp4.1LG03g18260Cucumber (Gy14) v2cgybcpeB404
Cp4.1LG03g18260Melon (DHL92) v3.6.1cpemedB685
Cp4.1LG03g18260Silver-seed gourdcarcpeB0334
Cp4.1LG03g18260Silver-seed gourdcarcpeB1098
Cp4.1LG03g18260Silver-seed gourdcarcpeB1504
Cp4.1LG03g18260Cucumber (Chinese Long) v3cpecucB0746
Cp4.1LG03g18260Cucumber (Chinese Long) v3cpecucB0755
Cp4.1LG03g18260Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g18260Wax gourdcpewgoB0765
Cp4.1LG03g18260Wax gourdcpewgoB0800
Cp4.1LG03g18260Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g18260Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG03g18260Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g18260Cucurbita pepo (Zucchini)cpecpeB478
Cp4.1LG03g18260Cucumber (Gy14) v1cgycpeB0380
Cp4.1LG03g18260Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g18260Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g18260Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g18260Cucurbita maxima (Rimu)cmacpeB640
Cp4.1LG03g18260Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g18260Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g18260Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g18260Cucurbita moschata (Rifu)cmocpeB590
Cp4.1LG03g18260Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g18260Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g18260Wild cucumber (PI 183967)cpecpiB598
Cp4.1LG03g18260Wild cucumber (PI 183967)cpecpiB610
Cp4.1LG03g18260Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g18260Cucumber (Chinese Long) v2cpecuB596
Cp4.1LG03g18260Cucumber (Chinese Long) v2cpecuB608
Cp4.1LG03g18260Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g18260Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g18260Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g18260Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g18260Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g18260Watermelon (97103) v1cpewmB613
Cp4.1LG03g18260Watermelon (97103) v1cpewmB622
Cp4.1LG03g18260Silver-seed gourdcarcpeB0327
Cp4.1LG03g18260Melon (DHL92) v3.5.1cpemeB578
Cp4.1LG03g18260Melon (DHL92) v3.5.1cpemeB585