CmoCh14G019110 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G019110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 14211508 .. 14213095 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCATATATTTGCTATCACTTAGGATTGAATGCAGATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCGCCGCCCGGCGAGTATTATGGTTTTACTGTAGGTGGATATGAAGTTTTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCACTGTAATTGCCATAACCGTACTGAAATCGCGTAATTTTCTCTTGCATTTCCTCTGTTTCTCTCTAATTATCTGGTTTTGATTTTGATTTTGCGATTTCCAAATGCTGAGAGTTCGCATCATAGGTAGATTAGTTGCTCATTGTTAAGTGAAACTGGTTGTTTGCGAGTTCCTTCGAGTAATTTACGGATGATTATGTTTCCGAATAACTTAATCTTTTCGAATGCGCATTCTTTCCATTTTGTGAGCATATTGAGCGAGTAATGAGTACGTTGCTTACAGTGAAATGTAGAAGAGTTACGAGATTGAACTGGACGCATGGATAAATCAGAGCACATTCGTCGAATGTAAGTATTGGATCCAATGGATACAGGCACGGGGACACCATGTTATTTCCAGTAGTGGACCTGTTGATACCAGTTCATCTAAAACGTGAGTTAAATTCATTTTTGTTTCTCATTTTTCTGATTTGAGTTAATACCAGTTCATCTAACCATGTTATCTTCCATGAGGCATTTTTTCTATAATTCCAGTTGATTCCGGTTGAGCAATTGTTTAAATATCCAATGTCTCGTCTAATGATTTATTGAATTATCATTTAAAATCAAAACTCTACTAGTCTTCGGAATTTCTCTTCCATTAGATTATTTAACATAAACAGTGAATTTGACCTGTAACCATGCTAACTGCTTCGGTAGTTGCTGTAATCAACGCCATCTTCAAGAATTTGTTGTGTAGAACTGATTTTCTTGCCTTGCTTTGTAGTTTAGTGAATCCGAGATGCATTTGACTCTCAAAGGAACCGATACCTCTTCTTCTTCCTCACTATTTATAGATCTTTTATGTTTTGGCAGTGAGAAGTCTCCAAATGGATTACCTTATCATCTTTATATTGCGCTAGTAATAATTGGATGCAGTTTAGTATTCCCTTTTAAATTTGATCATCAAATCCAACTAAGTTCATTCATTGTATGATTACAAAAGAATTACAACTGAGAAATATATGAATTTCATAAAACTAGATTACTTGTTTTAGCTTGCAGATGCATTTGATAGGAACTACAGACCACGGTTTTCAGTAGCTTAGATGCACGATGACCCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCAGTCACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG

mRNA sequence

ATGGTCTCATATATTTGCTATCACTTAGGATTGAATGCAGATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCGCCGCCCGGCGAGTATTATGGTTTTACTGTAGGTGGATATGAAGTTTTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCACTGTAATTGCCATAACCGTACTGAAATCGCATGCATTTGATAGGAACTACAGACCACGATGCACGATGACCCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCAGTCACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG

Coding sequence (CDS)

ATGGTCTCATATATTTGCTATCACTTAGGATTGAATGCAGATGAAATTCGTTTTACAAATTCGAGAATCATCCCATTTTATCTCTGCAACTGCGACGTGGCAATTTCGGATTCAGATTCCGATTTTTGGCGGGGATTCAACTTCTCGGAGCTGTTCTCCGGTTCAACCGCGCCGCCCGGCGAGTATTATGGTTTTACTGTAGGTGGATATGAAGTTTTAGGAAGGAAAAGAGAACGAGAAATGGAAGGATTGGTGGTTCGTTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCACTGTAATTGCCATAACCGTACTGAAATCGCATGCATTTGATAGGAACTACAGACCACGATGCACGATGACCCTCAGCAATGTTTCTGCTCCATCTGTGACGTGCTGGCCTGGAGGAATGAGCGACCGCACCTCTGCAATCCCACGTGCGTTCTTGAACTTGCCTGTTCCTCCAGTCACTGACAAATGCGACGAGGGGCTACCAATCCTGTATACTCCATAG
Homology
[Close]
BLAST of CmoCh14G019110 vs. TrEMBL
Match: A0A0A0L826_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133280 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 1 

Query: 81  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGTVIAITVLKSHAFDRNYRPRCTMTLSN 140
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG V + TV  S    R  R   T   S 
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 141 VSAPSVTCWPGG 153
             + +V+    G
Sbjct: 61  AHSSNVSIGSDG 72

[Close]
BLAST of CmoCh14G019110 vs. NCBI nr
Match: gi|659075928|ref|XP_008438406.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 

Query: 81  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGTVIAITVLKS 124
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG+V + TV  S
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFSKTVSTS 43

[Close]
BLAST of CmoCh14G019110 vs. NCBI nr
Match: gi|778677976|ref|XP_011650895.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 5.5e-10
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 1 

Query: 81  MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGTVIAITVLKSHAFDRNYRPRCTMTLSN 140
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG V + TV  S    R  R   T   S 
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 141 VSAPSVTCWPGG 153
             + +V+    G
Sbjct: 61  AHSSNVSIGSDG 72

The following BLAST results are available for this feature:
BLAST of CmoCh14G019110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G019110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L826_CUCSA3.8e-1059.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133280 PE=4 SV=1[more]
BLAST of CmoCh14G019110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G019110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075928|ref|XP_008438406.1|4.2e-1086.05PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo][more]
gi|778677976|ref|XP_011650895.1|5.5e-1059.72PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G019110.1CmoCh14G019110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G019110Lsi05G018030Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G019110Cp4.1LG03g18260Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G019110MELO3C006346.2Melon (DHL92) v3.6.1cmomedB260
CmoCh14G019110Carg06267Silver-seed gourdcarcmoB1284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G019110Cucumber (Chinese Long) v3cmocucB0267
CmoCh14G019110Cucumber (Chinese Long) v3cmocucB0279
CmoCh14G019110Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G019110Watermelon (97103) v2cmowmbB243
CmoCh14G019110Watermelon (97103) v2cmowmbB246
CmoCh14G019110Watermelon (97103) v2cmowmbB253
CmoCh14G019110Wax gourdcmowgoB0299
CmoCh14G019110Wax gourdcmowgoB0331
CmoCh14G019110Wax gourdcmowgoB0333
CmoCh14G019110Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G019110Cucurbita moschata (Rifu)cmocmoB213
CmoCh14G019110Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G019110Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G019110Cucumber (Gy14) v1cgycmoB0390
CmoCh14G019110Cucumber (Gy14) v1cgycmoB0700
CmoCh14G019110Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G019110Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G019110Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G019110Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G019110Wild cucumber (PI 183967)cmocpiB228
CmoCh14G019110Wild cucumber (PI 183967)cmocpiB239
CmoCh14G019110Wild cucumber (PI 183967)cmocpiB243
CmoCh14G019110Cucumber (Chinese Long) v2cmocuB225
CmoCh14G019110Cucumber (Chinese Long) v2cmocuB239
CmoCh14G019110Cucumber (Chinese Long) v2cmocuB236
CmoCh14G019110Melon (DHL92) v3.5.1cmomeB221
CmoCh14G019110Melon (DHL92) v3.5.1cmomeB230
CmoCh14G019110Watermelon (Charleston Gray)cmowcgB219
CmoCh14G019110Watermelon (Charleston Gray)cmowcgB221
CmoCh14G019110Watermelon (Charleston Gray)cmowcgB227
CmoCh14G019110Watermelon (97103) v1cmowmB231
CmoCh14G019110Watermelon (97103) v1cmowmB239
CmoCh14G019110Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G019110Cucurbita pepo (Zucchini)cmocpeB230
CmoCh14G019110Cucurbita pepo (Zucchini)cmocpeB252
CmoCh14G019110Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G019110Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G019110Bottle gourd (USVL1VR-Ls)cmolsiB235
CmoCh14G019110Cucumber (Gy14) v2cgybcmoB181
CmoCh14G019110Cucumber (Gy14) v2cgybcmoB288
CmoCh14G019110Cucumber (Gy14) v2cgybcmoB290
CmoCh14G019110Melon (DHL92) v3.6.1cmomedB250
CmoCh14G019110Silver-seed gourdcarcmoB0319
CmoCh14G019110Silver-seed gourdcarcmoB0328
CmoCh14G019110Silver-seed gourdcarcmoB1049
CmoCh14G019110Silver-seed gourdcarcmoB1443