Cp4.1LG03g17140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g17140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 12850414 .. 12850821 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

mRNA sequence

ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

Coding sequence (CDS)

ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

Protein sequence

MAYVNAFQVNPKTLNRCLIIQLKVVCIPPAAVVVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFPEKENRRGGYVEGRRSLQNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM
Homology
[Close]
BLAST of Cp4.1LG03g17140 vs. TrEMBL
Match: A0A0A0L7L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125540 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 33  VVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFP-EKENRRGG 92
           V TGTRKLKSM  QARA ALNTGHLE  T+NKTF D++ SSRT QL +S P EK  +   
Sbjct: 8   VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 93  YVEGRR-SLQNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM 136
            + G     +NDDGD C+C G    GR+SSGD   + A GEVHV+
Sbjct: 68  KMRGSALKSENDDGDSCDCSGSHDSGRSSSGDGAWKGAGGEVHVI 112

[Close]
BLAST of Cp4.1LG03g17140 vs. NCBI nr
Match: gi|700201454|gb|KGN56587.1| (hypothetical protein Csa_3G125540 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1 

Query: 33  VVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFP-EKENRRGG 92
           V TGTRKLKSM  QARA ALNTGHLE  T+NKTF D++ SSRT QL +S P EK  +   
Sbjct: 8   VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 93  YVEGRR-SLQNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM 136
            + G     +NDDGD C+C G    GR+SSGD   + A GEVHV+
Sbjct: 68  KMRGSALKSENDDGDSCDCSGSHDSGRSSSGDGAWKGAGGEVHVI 112

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g17140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7L5_CUCSA1.2e-1856.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125540 PE=4 SV=1[more]
BLAST of Cp4.1LG03g17140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201454|gb|KGN56587.1|1.8e-1856.19hypothetical protein Csa_3G125540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g17140.1Cp4.1LG03g17140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g17140CmaCh14G019870Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g17140Csa3G125540Cucumber (Chinese Long) v2cpecuB609
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g17140Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g17140Cucumber (Gy14) v2cgybcpeB679
Cp4.1LG03g17140Cucumber (Gy14) v2cgybcpeB834
Cp4.1LG03g17140Melon (DHL92) v3.6.1cpemedB655
Cp4.1LG03g17140Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g17140Silver-seed gourdcarcpeB0685
Cp4.1LG03g17140Silver-seed gourdcarcpeB0884
Cp4.1LG03g17140Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g17140Cucumber (Chinese Long) v3cpecucB0777
Cp4.1LG03g17140Cucumber (Chinese Long) v3cpecucB0785
Cp4.1LG03g17140Wax gourdcpewgoB0774
Cp4.1LG03g17140Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g17140Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g17140Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g17140Cucumber (Gy14) v1cgycpeB0791
Cp4.1LG03g17140Cucumber (Gy14) v1cgycpeB0965
Cp4.1LG03g17140Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g17140Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g17140Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g17140Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g17140Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g17140Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g17140Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g17140Wild cucumber (PI 183967)cpecpiB625
Cp4.1LG03g17140Wild cucumber (PI 183967)cpecpiB633
Cp4.1LG03g17140Cucumber (Chinese Long) v2cpecuB629
Cp4.1LG03g17140Bottle gourd (USVL1VR-Ls)cpelsiB482
Cp4.1LG03g17140Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g17140Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g17140Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g17140Watermelon (Charleston Gray)cpewcgB565
Cp4.1LG03g17140Watermelon (97103) v1cpewmB613
Cp4.1LG03g17140Watermelon (97103) v1cpewmB617
Cp4.1LG03g17140Watermelon (97103) v1cpewmB625
Cp4.1LG03g17140Silver-seed gourdcarcpeB0327
Cp4.1LG03g17140Melon (DHL92) v3.5.1cpemeB551
Cp4.1LG03g17140Melon (DHL92) v3.5.1cpemeB552
Cp4.1LG03g17140Melon (DHL92) v3.5.1cpemeB585