CmaCh14G019870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G019870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 13951299 .. 13951863 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAATAGAAGTAATTCGATTAAGAAGTAGAAACACACAGCCACGACTGGTTGCAATAATCATCGATGGAGCAACTTTGGTCAAAGTCAGCTGGATGCTTAATGACCAGCATCAATCAGTACGAATAAATTATTCATTTCTTAAAATAAAATAATATGTCGAGGCAGCTACTAAAATGACGTATGCGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGTTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATCTGGAACACCCAACCGATAACAAGACTTTCGCAGATGATGAACCTTCTTCACTGACCAACAAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGCAGGGCGCAGAAGTTTACAGAATGATGATGGCGATGTTTGCAATTGCTGCGGTGGTCATCGTTGTGGTCGAAATAGTTCCGGTGAGCAGCCGGAGAAGTGCATGTGA

mRNA sequence

ATGCGAAATAGAACTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGTTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATCTGGAACACCCAACCGATAACAAGACTTTCGCAGATGATGAACCTTCTTCACTGACCAACAAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGCAGGGCGCAGAAGTTTACAGAATGATGATGGCGATGTTTGCAATTGCTGCGGTGGTCATCGTTGTGGTCGAAATAGTTCCGGTGAGCAGCCGGAGAAGTGCATGTGA

Coding sequence (CDS)

ATGCGAAATAGAACTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGTTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATCTGGAACACCCAACCGATAACAAGACTTTCGCAGATGATGAACCTTCTTCACTGACCAACAAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGCAGGGCGCAGAAGTTTACAGAATGATGATGGCGATGTTTGCAATTGCTGCGGTGGTCATCGTTGTGGTCGAAATAGTTCCGGTGAGCAGCCGGAGAAGTGCATGTGA

Protein sequence

MRNRTVVVTGTRKLKSMFLQARAKALNTGHLEHPTDNKTFADDEPSSLTNKLLESFPEKENRRGGYVAGRRSLQNDDGDVCNCCGGHRCGRNSSGEQPEKCM
Homology
[Close]
BLAST of CmaCh14G019870 vs. TrEMBL
Match: A0A0A0L7L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125540 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 7  VVTGTRKLKSMFLQARAKALNTGHLEHPTDNKTFADDEPSSLTNKLLESFPEKENRRGGY 66
          V TGTRKLKSMF QARA ALNTGHLE  T+NKTF D++ SS T +L +S P+++ ++   
Sbjct: 8  VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 67 VAGRRSL--QNDDGDVCNCCGGHRCGRNSSGE 97
               +L  +NDDGD C+C G H  GR+SSG+
Sbjct: 68 KMRGSALKSENDDGDSCDCSGSHDSGRSSSGD 99

[Close]
BLAST of CmaCh14G019870 vs. NCBI nr
Match: gi|700201454|gb|KGN56587.1| (hypothetical protein Csa_3G125540 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1 

Query: 7  VVTGTRKLKSMFLQARAKALNTGHLEHPTDNKTFADDEPSSLTNKLLESFPEKENRRGGY 66
          V TGTRKLKSMF QARA ALNTGHLE  T+NKTF D++ SS T +L +S P+++ ++   
Sbjct: 8  VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 67 VAGRRSL--QNDDGDVCNCCGGHRCGRNSSGE 97
               +L  +NDDGD C+C G H  GR+SSG+
Sbjct: 68 KMRGSALKSENDDGDSCDCSGSHDSGRSSSGD 99

The following BLAST results are available for this feature:
BLAST of CmaCh14G019870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G019870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7L5_CUCSA3.3e-1654.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125540 PE=4 SV=1[more]
BLAST of CmaCh14G019870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G019870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201454|gb|KGN56587.1|4.8e-1654.35hypothetical protein Csa_3G125540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G019870.1CmaCh14G019870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G019870Csa3G125540Cucumber (Chinese Long) v2cmacuB253
CmaCh14G019870Cp4.1LG03g17140Cucurbita pepo (Zucchini)cmacpeB283
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G019870Cucumber (Chinese Long) v3cmacucB0291
CmaCh14G019870Cucumber (Chinese Long) v3cmacucB0313
CmaCh14G019870Watermelon (97103) v2cmawmbB263
CmaCh14G019870Watermelon (97103) v2cmawmbB269
CmaCh14G019870Wax gourdcmawgoB0320
CmaCh14G019870Cucurbita maxima (Rimu)cmacmaB249
CmaCh14G019870Cucurbita maxima (Rimu)cmacmaB285
CmaCh14G019870Cucurbita maxima (Rimu)cmacmaB299
CmaCh14G019870Cucumber (Gy14) v1cgycmaB0709
CmaCh14G019870Cucumber (Gy14) v1cgycmaB0990
CmaCh14G019870Cucurbita moschata (Rifu)cmacmoB245
CmaCh14G019870Cucurbita moschata (Rifu)cmacmoB251
CmaCh14G019870Cucurbita moschata (Rifu)cmacmoB271
CmaCh14G019870Cucurbita moschata (Rifu)cmacmoB281
CmaCh14G019870Wild cucumber (PI 183967)cmacpiB255
CmaCh14G019870Wild cucumber (PI 183967)cmacpiB273
CmaCh14G019870Cucumber (Chinese Long) v2cmacuB269
CmaCh14G019870Melon (DHL92) v3.5.1cmameB213
CmaCh14G019870Melon (DHL92) v3.5.1cmameB242
CmaCh14G019870Watermelon (Charleston Gray)cmawcgB233
CmaCh14G019870Watermelon (Charleston Gray)cmawcgB238
CmaCh14G019870Watermelon (97103) v1cmawmB242
CmaCh14G019870Watermelon (97103) v1cmawmB251
CmaCh14G019870Cucurbita pepo (Zucchini)cmacpeB259
CmaCh14G019870Cucurbita pepo (Zucchini)cmacpeB292
CmaCh14G019870Bottle gourd (USVL1VR-Ls)cmalsiB223
CmaCh14G019870Bottle gourd (USVL1VR-Ls)cmalsiB245
CmaCh14G019870Cucumber (Gy14) v2cgybcmaB318
CmaCh14G019870Cucumber (Gy14) v2cgybcmaB736
CmaCh14G019870Melon (DHL92) v3.6.1cmamedB239
CmaCh14G019870Melon (DHL92) v3.6.1cmamedB273
CmaCh14G019870Silver-seed gourdcarcmaB0313
CmaCh14G019870Silver-seed gourdcarcmaB0678
CmaCh14G019870Silver-seed gourdcarcmaB0874