Cp4.1LG03g16880 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g16880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionR2r3-myb transcription factor, putative
LocationCp4.1LG03 : 13068836 .. 13071895 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTAACTATGCTTTGTTTCAGTATTTATCTCTTTTAGTTTAGACTCATTTTGACTCGATTATTGTTGAAATCGTGTGAATTATTGTCTTCTGTTTATAGTGGCGATTACTATCAGTGAACAATTCCTATTATTAATATTTAATCTGATCCTAAATAGAATATGCACAAACGAAGTCTGTTCAAATTTTAGATAGGAAAAAAGTATGGTCGATGAATTTGTGTACAAAAGTATGCTCAATGAATTTGTGTATTTTAGGCACAGACGCATGTTTTGTAATCTAACATAATCTTAATCAGGGGGAGTTTTCTCACAATTTAGAGCTTCCTACAAAAATTAGGCAGGGAAGTTCACTGATCATGAAGTTCCAGCTAAAAATCAGGTTTGTTTTGTTTTCTTGTTTAGCAATCAGATTGGAAGAGGGAAGAGGGAAGAGGAAATTTTGAAAGACCCACAAGGAAACAATGGCGAAGGCCTGGTCTTGTCATGGTATGTCCCGTACCCTGTATGTCATTTTCATCATAGTAAATGCGTCTCAAAATCTCTCTCTGTTCAATAAATGCTAGTCTGCATTGTGAGAATCCGCAATAAATTCTTCTCCTTATTCGCTTATTTCTTATATCAGTTGTGCGCAATTGTAAAACCTCAGAATAAGAAACCTCTGTATTAACTCCCTCAATTTTTTGGACAAATTTTACTTTCAATGATGATTCAATTCTTACTATGCTCAACCATGTCAGTATTTATTGCAAGAACCAGCTTGAAACTAGCTGATTCTTGTCCTTCCCCTTCAGACTCACATAGCCATTAACTTCCCTCTTTTAATTTCAGTTCATTGAGATAAACCCTTTCACATGGCTTCCCTCCCCTCCTCCCTCTGTATTCGCTCTGAAAAATTGATGCTCTAAGGGAAGGCTCTGAACTTTTTCTTTCGCTCTTGGTCACTAGAGGGGGTGTCTCTGCCTCTGGTAGTGAAAATTGTGAGATGGGAAGGACGCCTTGTTGTGATAAGAAGGGGCTAAAGAAAGGGCCGTGGACATCAGAAGAAGATGAGCTCCTTATTAATTATATTAAGAAAAACAATGGCCATGGTAGCTGGAGATCGCTCCCCAAGCTTGCAGGTTTAGTGATCCAAAATTTTCCCTAGTTCCCACTTGTCATCTCTCATTCTGAAGTCTCTTTTTATTATTGTAACTTCTGGAACATATTCCTTCCTTCTTAACTTCGAAATTTATTGTAACTGGACTGATTAAAGAAAAGGAAAAAGAAGGAAGAAGAAGAACCTTGAGTAGTAAGTCCTTTACCCTGACCTTTTCCCTTTCACTCTCCTCATATCCCTCCCGTTCTCATTTTCTCCGATCTCATAGATTTAACAACAGCTAAGTTTCGTGCTTTGTTACCAAACAGTGTGCAGAAAAAGGTTTTAGCATCATTTTGAATCTTTTGTTCTGGTAATTTTTAGTCTGCATAAACCGTTTTGTATTGCCCTGCAAATGGTGCCTAAGTCCATACTTTTTTCTGCAAACTCTCTTCTTGTCATGGAATGGCTGCTTGCCTCGACCATCCTTCAAAATAAGTATAGTTGGTCTTTTGATTTGTCTCTAGTTTCGGATTTCGCCTCCAGTGTGATCTTGAGATTCCGAGGTTTGTCACCTGTACTGAGCATTTCTTTACTCAAACTTATTCTGTTCAAAATCCTTGTTCTTACACATGGGAAGCACCAAAAATTTTCTTGCACAATTGGGAGGGGACGATTTTTGTCTTATGTTCTTCATTATTTAATTTGTCTCTCACATTGGATGGGATGGTCTCTGTACTTGATTTGTTTATAGGCCTTCTACGGTGTGGGAAGAGCTGCCGTTTAAGGTGGACAAACTATCTAAGACCTGACATCAAACGTGGCCCCTTTACCCCTGAGGAAGAGAAGCTTGTTATTCAGCTTCATGGAATTCTTGGAAACAGGTGATGCTTCATTGTTTTCTTCCTGAATGTTATCATAGATAGATATGGCTGCCTAAATTTATGGTATCTTTTGTTTAATCGTCTCTGAACCACTATTTAATTCAAATTATGTCTATGTTACCTTTTGGCTAATCGTTTGATATTTTGCTATATGTTCATGCTGTACTACACAATTAACAGTTAGACGTTTGAATAGAGAAAGGTGTTTAGCTCGTGGAACTACTTTCAAGAAAACTCAAGGCTTAGTCTCGACTCTAGATGCTAGTTTGGAGAACCTGGAGGCCGATCATATATTAATTGGTTGTTTGCTTTAGTGAGGTTTCGAGACTTTTTTTTTTTAAGATCAGAAAAAACATCAACAAATATGTTTTATGATGGAATTTGACGATTGTTTCTCTTCAACTATTTGGTGCATTATGAATGTTGTTTGATGGAGTTTTACTGATCAAGACTCCTTGCAGGTGGGCTGCCATTGCTTCTCAACTGCCTGGAAGGACAGATAATGAAATCAAGAACTTATGGAACACCCACCTGAAGAAACGCCTTCTTTGCATTGGCATTGATCCACAGACACATGAACCCTTCAATTCTCGCTGCTCATCCTCTACAGCACCGGCATCCCCAACCACCCGCCACATGGCACAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCTCGACTTTCAAGGGAGTCATCACTCTTCACTCCACTTCCCATGGAAACGACGACCGATTCTGACTTTTTTCTTCAAATATGGAACTCTGAAGTAGGCGATTCGTTTCGTAAGTGCAGGGAAGACAAAACCACATGCCATAGCCAGAGTTCCCTGTCCTCATCAATCAAATGCGAGTCGGTTTACATTGTTGCGACCCATAACGGAGTCGATTACACCGGTTCCTCAGCCATGGAAAGCAACGAAAACGAAGAAACAGAATACAAAAACTTCAAATCCATGGCTGACATTGTGATGTCCAAGTCTGATTCTTCAAGTGCGAACGAGTTCGAGGAGTCGTCGGATAGTGCATTAGAACTGCTTCTGGACTTCCCCATTAACAATGACATGAGCTTCTTGGAAGAAAACAACACGAACACTTAG

mRNA sequence

ATGAAGGGGGAGTTTTCTCACAATTTAGAGCTTCCTACAAAAATTAGGCAGGGAAGTTCACTGATCATGAAGTTCCAGCTAAAAATCAGCAATCAGATTGGAAGAGGGAAGAGGGAAGAGGAAATTTTGAAAGACCCACAAGGAAACAATGGCGAAGGCCTGGTCTTGTCATGTTTCGGATTTCGCCTCCAGTGTGATCTTGAGATTCCGAGGGAAGACAAAACCACATGCCATAGCCAGAGTTCCCTGTCCTCATCAATCAAATGCGAGTCGGTTTACATTGTTGCGACCCATAACGGAGTCGATTACACCGGTTCCTCAGCCATGGAAAGCAACGAAAACGAAGAAACAGAATACAAAAACTTCAAATCCATGGCTGACATTGTGATGTCCAAGTCTGATTCTTCAAGTGCGAACGAGTTCGAGGAGTCGTCGGATAGTGCATTAGAACTGCTTCTGGACTTCCCCATTAACAATGACATGAGCTTCTTGGAAGAAAACAACACGAACACTTAG

Coding sequence (CDS)

ATGAAGGGGGAGTTTTCTCACAATTTAGAGCTTCCTACAAAAATTAGGCAGGGAAGTTCACTGATCATGAAGTTCCAGCTAAAAATCAGCAATCAGATTGGAAGAGGGAAGAGGGAAGAGGAAATTTTGAAAGACCCACAAGGAAACAATGGCGAAGGCCTGGTCTTGTCATGTTTCGGATTTCGCCTCCAGTGTGATCTTGAGATTCCGAGGGAAGACAAAACCACATGCCATAGCCAGAGTTCCCTGTCCTCATCAATCAAATGCGAGTCGGTTTACATTGTTGCGACCCATAACGGAGTCGATTACACCGGTTCCTCAGCCATGGAAAGCAACGAAAACGAAGAAACAGAATACAAAAACTTCAAATCCATGGCTGACATTGTGATGTCCAAGTCTGATTCTTCAAGTGCGAACGAGTTCGAGGAGTCGTCGGATAGTGCATTAGAACTGCTTCTGGACTTCCCCATTAACAATGACATGAGCTTCTTGGAAGAAAACAACACGAACACTTAG

Protein sequence

MKGEFSHNLELPTKIRQGSSLIMKFQLKISNQIGRGKREEEILKDPQGNNGEGLVLSCFGFRLQCDLEIPREDKTTCHSQSSLSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMADIVMSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNTNT
BLAST of Cp4.1LG03g16880 vs. TrEMBL
Match: A0A0A0L8X9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122500 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-36
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 71  REDKTTCHSQSSLSSSIKCESVYIVATHNGVDYTGSSAMESN-ENEETEYKNFKSMADIV 130
           R+DKTTC S S LSSS+KCES++IVATHN VDYTGSSAMESN ENEETEYKNF+SM DIV
Sbjct: 52  RDDKTTCQSLSPLSSSVKCESLFIVATHNRVDYTGSSAMESNNENEETEYKNFQSMTDIV 111

Query: 131 MSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNTNT 172
           MSKSDSSSANEFEESSDSAL LLLDFPINNDMSFLEE+N  T
Sbjct: 112 MSKSDSSSANEFEESSDSALGLLLDFPINNDMSFLEEDNIIT 153

BLAST of Cp4.1LG03g16880 vs. TrEMBL
Match: A0A067H2J7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021486mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 1

Query: 74  KTTCHSQSS-LSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMADIVMSK 133
           KT C S +S +SSS KC SV  V+T  G +  GSSA  SN+NE+TE K+ KS  + +++ 
Sbjct: 201 KTACQSPNSQVSSSTKCGSVSAVSTEIGHNLAGSSATPSNQNEDTECKSSKSCTEDMVAG 260

Query: 134 SDSSSANEFEESSDSALELLLDFPINNDMSFLEEN 168
           SD+SS+N+ ++SSDS+L+LLLDFPINNDMSFLE+N
Sbjct: 261 SDTSSSNDLQDSSDSSLQLLLDFPINNDMSFLEDN 295

BLAST of Cp4.1LG03g16880 vs. TrEMBL
Match: V4TDD2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021268mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 1

Query: 74  KTTCHSQSS-LSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMADIVMSK 133
           KT C S +S +SSS KC SV  V+T  G +  GSSA  SN+NE+TE K+ KS  + +++ 
Sbjct: 201 KTACQSPNSQVSSSTKCGSVSAVSTEIGHNLAGSSATPSNQNEDTECKSSKSCTEDMVAG 260

Query: 134 SDSSSANEFEESSDSALELLLDFPINNDMSFLEEN 168
           SD+SS+N+ ++SSDS+L+LLLDFPINNDMSFLE+N
Sbjct: 261 SDTSSSNDLQDSSDSSLQLLLDFPINNDMSFLEDN 295

BLAST of Cp4.1LG03g16880 vs. TrEMBL
Match: A0A061DT85_THECC (Myb domain protein 17 isoform 2 OS=Theobroma cacao GN=TCM_005371 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1

Query: 68  EIPREDKTTCHSQ-SSLSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMA 127
           ++ REDKT C S  S  SSS KC SV  V      +  GSS   SN+ E+T  K+FKS  
Sbjct: 164 KLNREDKTACQSPISQASSSTKCGSVSAVTIDICPNIAGSSTPASNQIEDTACKSFKSCT 223

Query: 128 DIVMSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNT 170
           +  +  SDSS +NE E+SSD+AL+LLLDFPINNDMSFLE  +T
Sbjct: 224 EDPVDASDSSCSNESEDSSDTALQLLLDFPINNDMSFLENVDT 266

BLAST of Cp4.1LG03g16880 vs. TrEMBL
Match: A0A061E159_THECC (Myb domain protein 17 isoform 1 OS=Theobroma cacao GN=TCM_005371 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1

Query: 68  EIPREDKTTCHSQ-SSLSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMA 127
           ++ REDKT C S  S  SSS KC SV  V      +  GSS   SN+ E+T  K+FKS  
Sbjct: 195 KLNREDKTACQSPISQASSSTKCGSVSAVTIDICPNIAGSSTPASNQIEDTACKSFKSCT 254

Query: 128 DIVMSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNT 170
           +  +  SDSS +NE E+SSD+AL+LLLDFPINNDMSFLE  +T
Sbjct: 255 EDPVDASDSSCSNESEDSSDTALQLLLDFPINNDMSFLENVDT 297

BLAST of Cp4.1LG03g16880 vs. NCBI nr
Match: gi|659077729|ref|XP_008439352.1| (PREDICTED: transcription factor MYB34-like [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query: 71  REDKTTCHSQSSLSSSIKCESVYIVATHNGVDYTGSSAMESN-ENEETEYKNFKSMADIV 130
           REDKTTC SQS LSSS+KCES++IVATH+ VDYTGSSAMESN ENEETEYKNF+SM DIV
Sbjct: 242 REDKTTCQSQSPLSSSVKCESLFIVATHDRVDYTGSSAMESNNENEETEYKNFQSMTDIV 301

Query: 131 MSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNTNT 172
           MSKSDSSSANEFEESSDSAL LLLDFPINNDMSFLEE+N NT
Sbjct: 302 MSKSDSSSANEFEESSDSALGLLLDFPINNDMSFLEEDNRNT 343

BLAST of Cp4.1LG03g16880 vs. NCBI nr
Match: gi|449432165|ref|XP_004133870.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 71  REDKTTCHSQSSLSSSIKCESVYIVATHNGVDYTGSSAMESN-ENEETEYKNFKSMADIV 130
           R+DKTTC S S LSSS+KCES++IVATHN VDYTGSSAMESN ENEETEYKNF+SM DIV
Sbjct: 199 RDDKTTCQSLSPLSSSVKCESLFIVATHNRVDYTGSSAMESNNENEETEYKNFQSMTDIV 258

Query: 131 MSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNTNT 172
           MSKSDSSSANEFEESSDSAL LLLDFPINNDMSFLEE+N  T
Sbjct: 259 MSKSDSSSANEFEESSDSALGLLLDFPINNDMSFLEEDNIIT 300

BLAST of Cp4.1LG03g16880 vs. NCBI nr
Match: gi|700201393|gb|KGN56526.1| (hypothetical protein Csa_3G122500 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 71  REDKTTCHSQSSLSSSIKCESVYIVATHNGVDYTGSSAMESN-ENEETEYKNFKSMADIV 130
           R+DKTTC S S LSSS+KCES++IVATHN VDYTGSSAMESN ENEETEYKNF+SM DIV
Sbjct: 52  RDDKTTCQSLSPLSSSVKCESLFIVATHNRVDYTGSSAMESNNENEETEYKNFQSMTDIV 111

Query: 131 MSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNTNT 172
           MSKSDSSSANEFEESSDSAL LLLDFPINNDMSFLEE+N  T
Sbjct: 112 MSKSDSSSANEFEESSDSALGLLLDFPINNDMSFLEEDNIIT 153

BLAST of Cp4.1LG03g16880 vs. NCBI nr
Match: gi|567905200|ref|XP_006445088.1| (hypothetical protein CICLE_v10021268mg [Citrus clementina])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 1

Query: 74  KTTCHSQSS-LSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMADIVMSK 133
           KT C S +S +SSS KC SV  V+T  G +  GSSA  SN+NE+TE K+ KS  + +++ 
Sbjct: 201 KTACQSPNSQVSSSTKCGSVSAVSTEIGHNLAGSSATPSNQNEDTECKSSKSCTEDMVAG 260

Query: 134 SDSSSANEFEESSDSALELLLDFPINNDMSFLEEN 168
           SD+SS+N+ ++SSDS+L+LLLDFPINNDMSFLE+N
Sbjct: 261 SDTSSSNDLQDSSDSSLQLLLDFPINNDMSFLEDN 295

BLAST of Cp4.1LG03g16880 vs. NCBI nr
Match: gi|590722298|ref|XP_007051856.1| (Myb domain protein 17 isoform 1 [Theobroma cacao])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1

Query: 68  EIPREDKTTCHSQ-SSLSSSIKCESVYIVATHNGVDYTGSSAMESNENEETEYKNFKSMA 127
           ++ REDKT C S  S  SSS KC SV  V      +  GSS   SN+ E+T  K+FKS  
Sbjct: 195 KLNREDKTACQSPISQASSSTKCGSVSAVTIDICPNIAGSSTPASNQIEDTACKSFKSCT 254

Query: 128 DIVMSKSDSSSANEFEESSDSALELLLDFPINNDMSFLEENNT 170
           +  +  SDSS +NE E+SSD+AL+LLLDFPINNDMSFLE  +T
Sbjct: 255 EDPVDASDSSCSNESEDSSDTALQLLLDFPINNDMSFLENVDT 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8X9_CUCSA3.7e-3685.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122500 PE=4 SV=1[more]
A0A067H2J7_CITSI8.7e-1756.84Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021486mg PE=4 SV=1[more]
V4TDD2_9ROSI8.7e-1756.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021268mg PE=4 SV=1[more]
A0A061DT85_THECC1.4e-1453.40Myb domain protein 17 isoform 2 OS=Theobroma cacao GN=TCM_005371 PE=4 SV=1[more]
A0A061E159_THECC1.4e-1453.40Myb domain protein 17 isoform 1 OS=Theobroma cacao GN=TCM_005371 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659077729|ref|XP_008439352.1|1.3e-3787.25PREDICTED: transcription factor MYB34-like [Cucumis melo][more]
gi|449432165|ref|XP_004133870.1|5.4e-3685.29PREDICTED: transcription repressor MYB6 [Cucumis sativus][more]
gi|700201393|gb|KGN56526.1|5.4e-3685.29hypothetical protein Csa_3G122500 [Cucumis sativus][more]
gi|567905200|ref|XP_006445088.1|1.2e-1656.84hypothetical protein CICLE_v10021268mg [Citrus clementina][more]
gi|590722298|ref|XP_007051856.1|2.0e-1453.40Myb domain protein 17 isoform 1 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009909 regulation of flower development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048443 stamen development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g16880.1Cp4.1LG03g16880.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g16880Cp4.1LG08g01520Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g16880Wax gourdcpewgoB0774
Cp4.1LG03g16880Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG03g16880Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG03g16880Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g16880Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g16880Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g16880Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g16880Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g16880Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g16880Watermelon (97103) v1cpewmB612
Cp4.1LG03g16880Watermelon (97103) v1cpewmB613
Cp4.1LG03g16880Melon (DHL92) v3.5.1cpemeB585